Hierarchy For All Packages

Class Hierarchy

• java.lang.Object
  • _3D_objects_counter (implements java.awt.event.AdjustmentListener, java.awt.event.FocusListener, ij.plugin.PlugIn)
  • _3D_OC_Options (implements ij.plugin.PlugIn)
  • sc.fiji.i5d.plugin.A_Image5D_test (implements ij.plugin.PlugIn)
  • loci.plugins.About (implements ij.plugin.PlugIn)
  • About_RATS (implements ij.plugin.PlugIn)
  • imglib.ops.operator.unary.Abs (implements imglib.ops.operator.UnaryOperator)
  • javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
    • org.scijava.ui.behaviour.util.AbstractNamedAction
      • bigwarp.BigWarpActions.AlignViewerPanelAction
      • bigwarp.BigWarpActions.DebugAction
      • bigwarp.BigWarpActions.EstimateWarpAction
      • bigwarp.BigWarpActions.ExportAffineAction
      • bigwarp.BigWarpActions.ExportImagePlusAction
      • bigwarp.BigWarpActions.ExportWarpAction
      • bigwarp.BigWarpActions.GarbageCollectionAction
      • bigwarp.BigWarpActions.GoToBookmarkAction
      • bigwarp.BigWarpActions.GoToBookmarkRotationAction
      • bigwarp.BigWarpActions.LandmarkGridDialogAction
      • bigwarp.BigWarpActions.LandmarkModeAction
      • bigwarp.BigWarpActions.LoadLandmarksAction
      • bigwarp.BigWarpActions.LoadSettingsAction
      • bigwarp.BigWarpActions.PrintTransformAction
      • bigwarp.BigWarpActions.QuickSaveLandmarksAction
      • bigwarp.BigWarpActions.ResetActiveViewerAction
      • bigwarp.BigWarpActions.SaveLandmarksAction
      • bigwarp.BigWarpActions.SaveSettingsAction
      • bigwarp.BigWarpActions.SaveWarpedAction
      • bigwarp.BigWarpActions.SaveWarpedXmlAction
      • bigwarp.BigWarpActions.SetBookmarkAction
      • bigwarp.BigWarpActions.SetWarpMagBaseAction
      • bigwarp.BigWarpActions.SetWarpVisGridTypeAction
      • bigwarp.BigWarpActions.SetWarpVisTypeAction
      • bigwarp.BigWarpActions.TableSelectionAction
      • bigwarp.BigWarpActions.ToggleAlwaysEstimateTransformAction
      • bigwarp.BigWarpActions.ToggleBoxAndTexOverlayVisibility
      • bigwarp.BigWarpActions.ToggleLandmarkModeAction
      • bigwarp.BigWarpActions.ToggleMovingImageDisplayAction
      • bigwarp.BigWarpActions.TogglePointNameVisibleAction
      • bigwarp.BigWarpActions.TogglePointsVisibleAction
      • bigwarp.BigWarpActions.UndoRedoAction
      • bigwarp.BigWarpActions.WarpToNearest
      • bigwarp.BigWarpActions.WarpToNextAction
      • bigwarp.BigWarpActions.WarpToSelectedAction
      • bdv.viewer.LandmarkPointMenu.ActivateSelectedHandler
      • bdv.viewer.LandmarkPointMenu.ClearHandler
      • bdv.viewer.LandmarkPointMenu.ClearSelectedHandler
      • bdv.viewer.LandmarkPointMenu.DeactivateSelectedHandler
      • bdv.viewer.LandmarkPointMenu.DeleteHandler
      • bdv.viewer.LandmarkPointMenu.DeleteSelectedHandler
      • bdv.tools.ToggleDialogAction
      • bdv.viewer.WarpNavigationActions.AlignPlaneAction
      • bdv.viewer.WarpNavigationActions.CardAction
      • bdv.viewer.WarpNavigationActions.CollapseCardAction
      • bdv.viewer.WarpNavigationActions.DisplayXfmAction
      • bdv.viewer.WarpNavigationActions.ExpandCardAction
      • bdv.viewer.WarpNavigationActions.RotatePlaneAction
      • bdv.viewer.WarpNavigationActions.SetCurrentSourceOrGroupAction
      • bdv.viewer.WarpNavigationActions.ToggleFusedModeAction
      • bdv.viewer.WarpNavigationActions.ToggleGroupingAction
      • bdv.viewer.WarpNavigationActions.ToggleInterPolationAction
      • bdv.viewer.WarpNavigationActions.ToggleSourceOrGroupVisibilityAction
    • fiji.plugin.timelapsedisplay.FileOpenMenuEntry
    • fiji.plugin.trackmate.visualization.trackscheme.SaveAction
    • spim.process.interestpointregistration.registrationstatistics.SelectTimepointEntry
    • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeActions.EditAction
  • fiji.plugin.trackmate.gui.wizard.AbstractAnimator
    • fiji.plugin.trackmate.gui.wizard.TransitionAnimator
  • bdv.viewer.animate.AbstractAnimator
    • bdv.viewer.animate.AbstractTransformAnimator
      • bdv.viewer.animate.RotationAnimator
      • bdv.viewer.animate.RotationAnimator2D
      • bdv.viewer.animate.SimilarityTransformAnimator
      • bdv.viewer.animate.SimilarityTransformAnimator2D
      • bdv.viewer.animate.SimilarityTransformAnimator3D
      • bdv.viewer.animate.TranslationAnimator
    • bdv.viewer.animate.MessageOverlayAnimator.TextAnimator
    • bdv.viewer.animate.TextOverlayAnimator (implements bdv.viewer.animate.OverlayAnimator)
  • org.jfree.chart.annotations.AbstractAnnotation (implements org.jfree.chart.annotations.Annotation, java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.annotations.AbstractXYAnnotation (implements org.jfree.chart.annotations.XYAnnotation)
      • fiji.plugin.trackmate.gui.components.XYTextSimpleAnnotation
  • fiji.util.gui.AbstractAnnotation (implements fiji.util.gui.OverlayedImageCanvas.Overlay)
  • mpicbg.ij.plugin.AbstractBlockFilter (implements ij.gui.DialogListener, ij.plugin.filter.ExtendedPlugInFilter)
    • mpicbg.ij.plugin.AbstractBlockStatistics
      • mpicbg.ij.plugin.SampleVariance
      • mpicbg.ij.plugin.StandardDeviation
    • mpicbg.ij.plugin.NormalizeLocalContrast
    • mpicbg.ij.plugin.RemoveOutliers
  • mpicbg.ij.plugin.AbstractBlockMatching (implements ij.plugin.PlugIn)
    • mpicbg.ij.plugin.BlockMatching_ExtractPoinRoi
    • mpicbg.ij.plugin.BlockMatching_TestParameters
  • javax.swing.AbstractCellEditor (implements javax.swing.CellEditor, java.io.Serializable)
    • javax.swing.DefaultCellEditor (implements javax.swing.table.TableCellEditor, javax.swing.tree.TreeCellEditor)
      • bdv.gui.BigWarpLandmarkPanel.TextFieldCellEditor
  • weka.classifiers.AbstractClassifier (implements weka.core.BatchPredictor, weka.core.CapabilitiesHandler, weka.core.CapabilitiesIgnorer, weka.classifiers.Classifier, java.lang.Cloneable, weka.core.CommandlineRunnable, weka.core.OptionHandler, weka.core.RevisionHandler, java.io.Serializable)
    • ai.BalancedRandomForest (implements weka.core.Randomizable)
    • hr.irb.fastRandomForest.FastRandomForest (implements weka.core.AdditionalMeasureProducer, weka.core.OptionHandler, weka.core.Randomizable, weka.core.TechnicalInformationHandler, weka.core.WeightedInstancesHandler)
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        • script.imglib.analysis.DoGPeaks<N>
        • vib.app.FileGroup
        • script.imglib.analysis.PickPeaks<T>
        • org.scijava.util.SizableArrayList<E> (implements org.scijava.util.Sizable)
          • org.scijava.table.AbstractTable<C,T> (implements org.scijava.table.Table<C,T>)
            • org.scijava.table.DefaultGenericTable (implements org.scijava.table.GenericTable)
              • sc.fiji.snt.analysis.SNTTable
                • sc.fiji.snt.analysis.sholl.gui.ShollTable
      • mpicbg.util.RingBuffer<T>
      • java.util.Vector<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        • sc.fiji.cellCounter.CellCntrMarkerVector
        • bunwarpj.CumulativeQueue
    • java.util.AbstractSet<E> (implements java.util.Set<E>)
      • delaunay.Simplex (implements java.util.Set<E>)
    • ini.trakem2.display.Node.NodeCollection<I>
  • org.scijava.AbstractContextual (implements org.scijava.Contextual)
    • org.scijava.plugin.AbstractRichPlugin (implements org.scijava.plugin.RichPlugin)
      • org.scijava.service.AbstractService (implements org.scijava.service.Service)
        • net.imagej.ui.swing.ops.DefaultOpFinderService (implements net.imagej.ui.swing.ops.OpFinderService)
        • sc.fiji.snt.SNTService (implements net.imagej.ImageJService)
        • fiji.plugin.trackmate.TrackMateService (implements net.imagej.ImageJService)
    • org.scijava.command.ContextCommand (implements org.scijava.Cancelable, org.scijava.command.Command)
      • sc.fiji.snt.analysis.sholl.math.Comparator
      • sc.fiji.snt.gui.cmds.CompareFilesCmd
      • sc.fiji.snt.plugin.ConvexHullCmd
      • sc.fiji.snt.gui.cmds.CustomizeLegendCmd
      • sc.fiji.snt.gui.cmds.CustomizeObjCmd
      • sc.fiji.snt.gui.cmds.CustomizeTreeCmd
      • net.imagej.ui.swing.ops.FindOps
      • sc.fiji.snt.analysis.sholl.parsers.ImageParser (implements sc.fiji.snt.analysis.sholl.parsers.Parser)
        • sc.fiji.snt.analysis.sholl.parsers.ImageParser2D
        • sc.fiji.snt.analysis.sholl.parsers.ImageParser3D
      • sc.fiji.snt.analysis.sholl.math.LinearProfileStats (implements sc.fiji.snt.analysis.sholl.math.ShollStats)
      • sc.fiji.snt.gui.cmds.LoadObjCmd
      • sc.fiji.snt.gui.cmds.MultiSWCImporterCmd
      • sc.fiji.snt.gui.cmds.mxOrganicLayoutPrefsCmd
      • sc.fiji.snt.gui.cmds.NewGraphOptionsCmd
        • sc.fiji.snt.gui.cmds.AnnotationGraphGeneratorCmd
      • sc.fiji.snt.analysis.sholl.math.NormalizedProfileStats (implements sc.fiji.snt.analysis.sholl.math.ShollStats)
      • sc.fiji.snt.gui.cmds.PathFitterCmd
      • sc.fiji.snt.gui.cmds.PrefsCmd
      • sc.fiji.snt.gui.cmds.ReconstructionViewerCmd
      • sc.fiji.snt.gui.cmds.RecViewerPrefsCmd
      • sc.fiji.snt.plugin.ShollAnalysisBulkTreeCmd
      • sc.fiji.snt.gui.cmds.ShortcutWindowCmd (implements ij.plugin.PlugIn)
      • sc.fiji.snt.gui.cmds.ShowCorrespondencesCmd
      • sc.fiji.snt.plugin.StrahlerCmd
      • sc.fiji.snt.gui.cmds.SWCTypeFilterCmd
      • sc.fiji.snt.gui.cmds.SWCTypeOptionsCmd
      • sc.fiji.snt.analysis.TreeAnalyzer
        • sc.fiji.snt.plugin.PathOrderAnalysisCmd
        • sc.fiji.snt.analysis.RoiConverter
        • sc.fiji.snt.analysis.TreeStatistics
          • sc.fiji.snt.analysis.MultiTreeStatistics
          • sc.fiji.snt.analysis.PathAnalyzer
  • sc.fiji.snt.analysis.AbstractConvexHull
    • sc.fiji.snt.analysis.ConvexHull2D
    • sc.fiji.snt.analysis.ConvexHull3D
  • org.janelia.thickness.inference.fits.AbstractCorrelationFit
    • org.janelia.thickness.inference.fits.GlobalCorrelationFitAverage
    • org.janelia.thickness.inference.fits.GlobalCorrelationFitAverageRegularized
    • org.janelia.thickness.inference.fits.LocalCorrelationFitAverage
  • org.jfree.data.general.AbstractDataset (implements java.lang.Cloneable, org.jfree.data.general.Dataset, java.io.ObjectInputValidation, java.io.Serializable)
    • org.jfree.data.general.AbstractSeriesDataset (implements java.io.Serializable, org.jfree.data.general.SeriesChangeListener, org.jfree.data.general.SeriesDataset)
      • org.jfree.data.xy.AbstractXYDataset (implements org.jfree.data.xy.XYDataset)
        • org.jfree.data.xy.AbstractIntervalXYDataset (implements org.jfree.data.xy.IntervalXYDataset)
          • org.jfree.data.statistics.HistogramDataset (implements java.lang.Cloneable, org.jfree.data.xy.IntervalXYDataset, org.jfree.chart.util.PublicCloneable, java.io.Serializable)
            • fiji.plugin.trackmate.gui.components.LogHistogramDataset
    • fiji.plugin.trackmate.features.ModelDataset (implements java.lang.Iterable<T>, org.jfree.data.xy.XYDataset)
      • fiji.plugin.trackmate.features.EdgeCollectionDataset
      • fiji.plugin.trackmate.features.SpotCollectionDataset (implements org.jfree.data.xy.XYDataset)
      • fiji.plugin.trackmate.features.TrackCollectionDataset
  • fiji.plugin.trackmate.features.edges.AbstractEdgeAnalyzer (implements fiji.plugin.trackmate.features.edges.EdgeAnalyzer)
    • fiji.plugin.trackmate.features.edges.DirectionalChangeAnalyzer
    • fiji.plugin.trackmate.features.edges.EdgeSpeedAnalyzer
    • fiji.plugin.trackmate.features.edges.EdgeTargetAnalyzer
    • fiji.plugin.trackmate.features.edges.EdgeTimeLocationAnalyzer
  • net.imglib2.AbstractEuclideanSpace (implements net.imglib2.EuclideanSpace)
    • net.imglib2.AbstractInterval (implements net.imglib2.Interval)
      • bigwarp.source.GridRandomAccessibleInterval<T> (implements net.imglib2.RandomAccessibleInterval<T>)
      • bdv.util.ModifiableInterval
    • net.imglib2.AbstractLocalizable (implements net.imglib2.Localizable)
      • bigwarp.source.GridRandomAccess<T> (implements net.imglib2.RandomAccess<T>)
      • net.imglib2.Point (implements net.imglib2.Positionable)
        • bdv.util.ConstantRandomAccessible.ConstantRandomAccess (implements net.imglib2.RandomAccess<T>)
        • org.janelia.utility.OuterProductView.OuterProductAccess (implements net.imglib2.RandomAccess<T>)
    • net.imglib2.AbstractLocalizableInt (implements net.imglib2.Localizable)
      • spim.process.fusion.weights.NormalizingRandomAccess<T> (implements net.imglib2.RandomAccess<T>)
      • spim.process.fusion.weights.TransformedInterpolatedRealRandomAccess<T> (implements net.imglib2.RandomAccess<T>)
    • net.imglib2.AbstractRealInterval (implements net.imglib2.RealInterval)
      • bigwarp.source.GridRealRandomAccessibleRealInterval<T> (implements net.imglib2.RealRandomAccessibleRealInterval<T>)
      • bigwarp.source.JacobianDeterminantRandomAccess.JacobianDeterminantRandomAccessibleInterval<T> (implements net.imglib2.RealRandomAccessibleRealInterval<T>)
      • bdv.util.ModifiableRealInterval
      • net.imglib2.iterator.RealIntervalIterator (implements net.imglib2.Iterator, net.imglib2.RealLocalizable)
      • bigwarp.source.WarpMagnitudeRandomAccessibleInterval<T> (implements net.imglib2.RealRandomAccessibleRealInterval<T>)
    • net.imglib2.AbstractRealLocalizable (implements net.imglib2.RealLocalizable)
      • bigwarp.source.GridRealRandomAccess<T> (implements net.imglib2.RealRandomAccess<T>)
      • bigwarp.source.JacobianDeterminantRandomAccess<T> (implements net.imglib2.RealRandomAccess<T>)
      • net.imglib2.RealPoint (implements net.imglib2.RealPositionable)
        • bdv.tools.boundingbox.BoxRealRandomAccessible.Access (implements net.imglib2.RealRandomAccess<T>)
      • bigwarp.source.WarpMagnitudeRandomAccess<T> (implements net.imglib2.RealRandomAccess<T>)
    • fiji.plugin.trackmate.Spot (implements java.lang.Comparable<T>, net.imglib2.RealLocalizable)
  • fiji.plugin.trackmate.features.AbstractFeatureGrapher
    • fiji.plugin.trackmate.features.EdgeFeatureGrapher
    • fiji.plugin.trackmate.features.SpotFeatureGrapher
    • fiji.plugin.trackmate.features.TrackFeatureGrapher
  • org.jgrapht.graph.AbstractGraph<V,E> (implements org.jgrapht.Graph<V,E>)
    • org.jgrapht.graph.AbstractBaseGraph<V,E> (implements java.lang.Cloneable, org.jgrapht.Graph<V,E>, java.io.Serializable)
      • sc.fiji.snt.analysis.graph.SNTGraph<V,E>
        • sc.fiji.snt.analysis.graph.AnnotationGraph
        • sc.fiji.snt.analysis.graph.DirectedWeightedGraph
        • sc.fiji.snt.analysis.graph.SNTPseudograph<V,E>
    • org.jgrapht.graph.AsSubgraph<V,E> (implements java.io.Serializable)
      • sc.fiji.snt.analysis.graph.DirectedWeightedSubgraph
  • org.jgrapht.traverse.AbstractGraphIterator<V,E> (implements org.jgrapht.traverse.GraphIterator<V,E>)
    • fiji.plugin.trackmate.graph.SortedDepthFirstIterator<V,E>
      • fiji.plugin.trackmate.graph.TimeDirectedDepthFirstIterator
      • fiji.plugin.trackmate.graph.TimeDirectedSortedDepthFirstIterator
  • net.imglib2.img.AbstractImg<T> (implements net.imglib2.img.Img<T>)
    • net.imglib2.img.list.AbstractLongListImg<T>
      • bdv.img.cache.VolatileCachedCellImg.VolatileCachedCells<T>
    • net.imglib2.img.AbstractNativeImg<T,A> (implements net.imglib2.img.NativeImg<T,A>)
      • net.imglib2.img.cell.AbstractCellImg<T,A,C,I>
        • bdv.img.cache.VolatileCachedCellImg<T,A>
  • spim.fiji.spimdata.imgloaders.AbstractImgLoader (implements mpicbg.spim.data.legacy.LegacyImgLoader<T>)
    • spim.fiji.spimdata.imgloaders.AbstractImgFactoryImgLoader
      • spim.fiji.spimdata.imgloaders.LegacyLightSheetZ1ImgLoader
      • spim.fiji.spimdata.imgloaders.LegacySlideBook6ImgLoader
      • spim.fiji.spimdata.imgloaders.LegacyStackImgLoader
        • spim.fiji.spimdata.imgloaders.LegacyStackImgLoaderIJ
        • spim.fiji.spimdata.imgloaders.LegacyStackImgLoaderLOCI
    • spim.fiji.spimdata.imgloaders.LegacyDHMImgLoader
    • spim.fiji.spimdata.imgloaders.LegacyMicroManagerImgLoader
  • weka.core.AbstractInstance (implements weka.core.Instance, weka.core.RevisionHandler, java.io.Serializable)
    • weka.core.DenseInstance
      • trainableSegmentation.ReusableDenseInstance
  • mpicbg.ij.integral.AbstractInteractiveBlockFilter (implements java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, ij.plugin.PlugIn)
    • mpicbg.ij.integral.InteractiveDifferenceOfMean (implements java.awt.event.MouseWheelListener)
    • mpicbg.ij.integral.InteractiveMean
    • mpicbg.ij.integral.InteractivePMCC
      • mpicbg.ij.integral.InteractiveSquarePMCC
    • mpicbg.ij.integral.InteractiveScale
    • mpicbg.ij.integral.InteractiveStandardDeviation
    • mpicbg.ij.integral.InteractiveTilt
    • mpicbg.ij.integral.InteractiveVariance
  • mpicbg.trakem2.align.AbstractLayerAlignmentParam (implements java.io.Serializable)
    • mpicbg.trakem2.align.ElasticLayerAlignment.Param (implements java.io.Serializable)
    • mpicbg.trakem2.align.RegularizedAffineLayerAlignment.Param (implements java.io.Serializable)
  • bdv.spimdata.legacy.AbstractLegacyViewerImgLoader<T,V> (implements bdv.spimdata.legacy.LegacyViewerImgLoader<T,V>)
  • org.janelia.thickness.lut.AbstractLUTGrid (implements net.imglib2.realtransform.InvertibleRealTransform)
    • org.janelia.thickness.lut.LUTGrid
    • org.janelia.thickness.lut.SingleDimensionLUTGrid
  • org.janelia.thickness.lut.AbstractLUTRealTransform (implements net.imglib2.realtransform.InvertibleRealTransform)
    • org.janelia.thickness.lut.LUTRealTransform
    • org.janelia.thickness.lut.SingleDimensionLUTRealTransform
  • org.janelia.thickness.lut.AbstractLUTRealTransformField (implements net.imglib2.realtransform.InvertibleRealTransform)
    • org.janelia.thickness.lut.LUTRealTransformField
    • org.janelia.thickness.lut.SingleDimensionLUTRealTransformField
  • java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
    • java.util.HashMap<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
      • loci.plugins.in.ImporterMetadata
      • ini.trakem2.utils.TypedHashMap<K,V>
    • java.util.TreeMap<K,V> (implements java.lang.Cloneable, java.util.NavigableMap<K,V>, java.io.Serializable)
      • script.imglib.analysis.Histogram<T>
  • mpicbg.models.AbstractModel<M> (implements mpicbg.models.Model<M>, java.io.Serializable)
    • mpicbg.models.AbstractAffineModel1D<M> (implements mpicbg.models.Affine1D<T>, mpicbg.models.InvertibleBoundable)
      • mpicbg.models.AffineModel1D (implements mpicbg.models.InvertibleBoundable)
      • mpicbg.models.TranslationModel1D
    • mpicbg.models.AbstractAffineModel2D<M> (implements mpicbg.models.Affine2D<T>, mpicbg.models.InvertibleBoundable, mpicbg.models.InvertibleCoordinateTransform)
      • mpicbg.models.AffineModel2D
        • mpicbg.trakem2.transform.AffineModel2D (implements mpicbg.trakem2.transform.InvertibleCoordinateTransform)
      • mpicbg.models.RigidModel2D
        • mpicbg.trakem2.transform.RigidModel2D (implements mpicbg.trakem2.transform.InvertibleCoordinateTransform)
      • mpicbg.models.SimilarityModel2D
        • mpicbg.trakem2.transform.SimilarityModel2D (implements mpicbg.trakem2.transform.InvertibleCoordinateTransform)
      • mpicbg.models.TranslationModel2D
        • mpicbg.trakem2.transform.TranslationModel2D (implements mpicbg.trakem2.transform.InvertibleCoordinateTransform)
    • mpicbg.models.AbstractAffineModel3D<M> (implements mpicbg.models.Affine3D<T>, mpicbg.models.InvertibleBoundable)
      • mpicbg.models.AffineModel3D (implements mpicbg.models.InvertibleBoundable)
        • mpicbg.trakem2.transform.AffineModel3D (implements mpicbg.trakem2.transform.InvertibleCoordinateTransform)
      • mpicbg.models.RigidModel3D (implements mpicbg.models.InvertibleBoundable)
      • mpicbg.models.SimilarityModel3D (implements mpicbg.models.InvertibleBoundable)
      • bdv.viewer.animate.SimilarityModel3D (implements mpicbg.models.InvertibleBoundable)
      • mpicbg.models.TranslationModel3D (implements mpicbg.models.InvertibleBoundable)
        • mpicbg.trakem2.transform.TranslationModel3D (implements mpicbg.trakem2.transform.InvertibleCoordinateTransform)
    • mpicbg.models.ConstantModel<A,M>
      • mpicbg.models.InvertibleConstantModel<A,M> (implements mpicbg.models.InvertibleCoordinateTransform)
        • mpicbg.models.ConstantAffineModel1D<A> (implements mpicbg.models.Affine1D<T>, mpicbg.models.InvertibleBoundable)
    • bunwarpj.trakem2.transform.CubicBSplineTransform (implements mpicbg.trakem2.transform.CoordinateTransform)
    • mpicbg.models.HomographyModel2D (implements mpicbg.models.InvertibleBoundable)
      • mpicbg.trakem2.transform.HomographyModel2D (implements mpicbg.trakem2.transform.InvertibleCoordinateTransform)
    • mpicbg.models.IdentityModel (implements mpicbg.models.Affine1D<T>, mpicbg.models.Affine2D<T>, mpicbg.models.Affine3D<T>, mpicbg.models.InvertibleBoundable)
    • mpicbg.models.InterpolatedModel<A,B,M>
      • mpicbg.models.InvertibleInterpolatedModel<A,B,M> (implements mpicbg.models.InvertibleCoordinateTransform)
        • mpicbg.models.InterpolatedAffineModel1D<A,B> (implements mpicbg.models.Affine1D<T>, mpicbg.models.InvertibleBoundable)
        • mpicbg.models.InterpolatedAffineModel2D<A,B> (implements mpicbg.models.Affine2D<T>, mpicbg.models.InvertibleBoundable)
        • mpicbg.models.InterpolatedAffineModel3D<A,B> (implements mpicbg.models.Affine3D<T>, mpicbg.models.InvertibleBoundable)
    • lenscorrection.PolynomialModel2D
    • mpicbg.pointdescriptor.model.TranslationInvariantModel<M>
      • mpicbg.pointdescriptor.model.FixedModel
      • mpicbg.pointdescriptor.model.TranslationInvariantAffineModel3D
      • mpicbg.pointdescriptor.model.TranslationInvariantFixedModel
      • mpicbg.pointdescriptor.model.TranslationInvariantRigidModel2D
      • mpicbg.pointdescriptor.model.TranslationInvariantRigidModel3D
      • mpicbg.pointdescriptor.model.TranslationInvariantSimilarityModel3D
  • org.scijava.module.AbstractModule (implements org.scijava.module.Module)
    • org.scijava.module.DefaultMutableModule (implements org.scijava.module.MutableModule)
      • org.scijava.command.DynamicCommand (implements org.scijava.Cancelable, org.scijava.command.Command, org.scijava.Contextual)
        • sc.fiji.snt.gui.cmds.AnnotationGraphRecViewerCmd
        • sc.fiji.snt.plugin.ChooseDataset
        • sc.fiji.snt.gui.cmds.CommonDynamicCmd
          • sc.fiji.snt.plugin.AnalyzerCmd
          • sc.fiji.snt.plugin.BrainAnnotationCmd
          • sc.fiji.snt.gui.cmds.ChooseDatasetCmd
            • sc.fiji.snt.plugin.SkeletonConverterCmd
          • sc.fiji.snt.gui.cmds.ColorMapReconstructionCmd
          • sc.fiji.snt.gui.cmds.ComputeSecondaryImg<T,U> (implements org.scijava.command.Interactive, sc.fiji.snt.gui.SigmaPaletteListener)
          • sc.fiji.snt.gui.cmds.DistributionBPCmd
          • sc.fiji.snt.gui.cmds.DistributionCPCmd
          • sc.fiji.snt.gui.cmds.DuplicateCmd
          • sc.fiji.snt.gui.cmds.GraphGeneratorCmd
          • sc.fiji.snt.plugin.GroupAnalyzerCmd
          • sc.fiji.snt.gui.cmds.InsectBrainImporterCmd
          • sc.fiji.snt.gui.cmds.JSONImporterCmd
          • sc.fiji.snt.gui.cmds.LoadReconstructionCmd
          • sc.fiji.snt.plugin.LocalThicknessCmd
          • sc.fiji.snt.gui.cmds.MLImporterCmd
          • sc.fiji.snt.plugin.MultiTreeMapperCmd
          • sc.fiji.snt.gui.cmds.OpenDatasetCmd (implements org.scijava.command.Command)
          • sc.fiji.snt.plugin.PathAnalyzerCmd
          • sc.fiji.snt.plugin.PathMatcherCmd
          • sc.fiji.snt.analysis.PathProfiler
          • sc.fiji.snt.plugin.PathSpineAnalysisCmd
          • sc.fiji.snt.plugin.PathTimeAnalysisCmd
          • sc.fiji.snt.plugin.PlotterCmd (implements org.scijava.command.Interactive)
          • sc.fiji.snt.gui.cmds.RemoteSWCImporterCmd
          • sc.fiji.snt.gui.SaveMeasurementsCmd
          • sc.fiji.snt.plugin.SpineExtractorCmd
          • sc.fiji.snt.gui.cmds.TranslateReconstructionsCmd (implements org.scijava.command.Interactive)
          • sc.fiji.snt.plugin.TreeMapperCmd
        • sc.fiji.snt.plugin.GraphAdapterMapperCmd
        • org.scijava.command.InteractiveCommand (implements org.scijava.command.Interactive, org.scijava.log.Logged, org.scijava.command.Previewable)
          • sc.fiji.snt.gui.cmds.AddTextAnnotationCmd
        • sc.fiji.snt.gui.cmds.mxCircleLayoutGroupedCmd
        • org.scijava.options.OptionsPlugin (implements org.scijava.plugin.SingletonPlugin)
          • sc.fiji.cellCounter.CellCounterOptions
          • sc.fiji.snt.plugin.ShollAnalysisPrefsCmd
        • sc.fiji.snt.plugin.ShollAnalysisImgCmd (implements org.scijava.Cancelable, org.scijava.command.Interactive)
        • sc.fiji.snt.plugin.ShollAnalysisTreeCmd (implements org.scijava.Cancelable, org.scijava.command.Interactive)
        • sc.fiji.snt.gui.cmds.SNTLoaderCmd
        • sc.fiji.snt.gui.cmds.TreeGraphRecViewerCmd
  • mpicbg.models.AbstractMovingLeastSquaresTransform (implements mpicbg.models.CoordinateTransform, java.io.Serializable)
    • mpicbg.models.MovingLeastSquaresTransform
      • mpicbg.trakem2.transform.MovingLeastSquaresTransform (implements mpicbg.trakem2.transform.CoordinateTransform)
    • mpicbg.models.MovingLeastSquaresTransform2
      • mpicbg.trakem2.transform.MovingLeastSquaresTransform2 (implements mpicbg.trakem2.transform.CoordinateTransform)
  • org.janelia.saalfeldlab.n5.metadata.AbstractN5Metadata<T> (implements org.janelia.saalfeldlab.n5.metadata.N5GsonMetadataParser<T>, org.janelia.saalfeldlab.n5.metadata.N5Metadata, org.janelia.saalfeldlab.n5.metadata.N5MetadataWriter<T>)
    • bigwarp.metadata.BwN5SingleScaleLegacyMetadata (implements org.janelia.saalfeldlab.n5.metadata.ImageplusMetadata<T>, org.janelia.saalfeldlab.n5.metadata.PhysicalMetadata)
  • net.imagej.ops.AbstractOp (implements net.imagej.ops.Op)
    • net.imagej.ops.special.AbstractUnaryOp<I,O> (implements net.imagej.ops.special.UnaryOp<I,O>)
      • net.imagej.ops.special.computer.AbstractUnaryComputerOp<I,O> (implements net.imagej.ops.special.computer.UnaryComputerOp<I,O>)
        • sc.fiji.snt.filter.Frangi<T,U> (implements java.util.function.Consumer<T>, net.imagej.ops.Ops.Filter.FrangiVesselness)
        • sc.fiji.snt.filter.Tubeness<T,U> (implements java.util.function.Consumer<T>, net.imagej.ops.Ops.Filter.Tubeness)
  • mpicbg.panorama.AbstractPanorama_View (implements java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, ij.plugin.PlugIn)
    • mpicbg.panorama.EquirectangularPanorama_View
    • mpicbg.panorama.Panorama_View
  • mpicbg.panorama.AbstractPanorama_View.GUI
  • mpicbg.panorama.AbstractPanorama_View.Mapper
  • org.janelia.thickness.lut.AbstractPerumtationTransform (implements net.imglib2.transform.InvertibleTransform)
    • org.janelia.thickness.lut.PermutationTransform
    • org.janelia.thickness.lut.SingleDimensionPermutationTransform
  • mpicbg.pointdescriptor.AbstractPointDescriptor<P,F>
    • mpicbg.pointdescriptor.LocalCoordinateSystemPointDescriptor<P> (implements fiji.util.node.Leaf<N>)
    • mpicbg.pointdescriptor.ModelPointDescriptor<P>
    • mpicbg.pointdescriptor.SimplePointDescriptor<P>
  • fiji.plugin.trackmate.providers.AbstractProvider<K>
    • fiji.plugin.trackmate.providers.ActionProvider
    • fiji.plugin.trackmate.providers.DetectorProvider
    • fiji.plugin.trackmate.providers.EdgeAnalyzerProvider
    • fiji.plugin.trackmate.providers.SpotAnalyzerProvider
    • fiji.plugin.trackmate.providers.SpotMorphologyAnalyzerProvider
    • fiji.plugin.trackmate.providers.TrackAnalyzerProvider
    • fiji.plugin.trackmate.providers.TrackerProvider
    • fiji.plugin.trackmate.providers.ViewProvider
  • mpicbg.imglib.algorithm.extremafinder.AbstractRegionalExtremaFinder<T> (implements mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder<T>)
    • mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder2D<T>
    • mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder3D<T>
  • sc.fiji.snt.tracing.AbstractSearch (implements java.lang.Runnable, sc.fiji.snt.tracing.SearchInterface)
    • sc.fiji.snt.tracing.BiSearch
    • sc.fiji.snt.tracing.SearchThread
      • sc.fiji.snt.tracing.FillerThread
      • sc.fiji.snt.tracing.TracerThread
  • fiji.plugin.trackmate.detection.semiauto.AbstractSemiAutoTracker<T> (implements net.imglib2.algorithm.Algorithm, net.imglib2.algorithm.MultiThreaded)
    • fiji.plugin.trackmate.detection.semiauto.SemiAutoTracker<T>
  • fiji.plugin.trackmate.detection.semiauto.AbstractSemiAutoTracker.SearchRegion<R>
  • mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<V,D,L>
    • mpicbg.spim.data.sequence.SequenceDescription
    • bdv.spimdata.SequenceDescriptionMinimal
  • mpicbg.spim.data.generic.sequence.AbstractSequenceDescriptionUtils
  • mpicbg.imglib.cursor.special.AbstractSortedGrayLevelIterator<T> (implements mpicbg.imglib.cursor.Iterable, mpicbg.imglib.cursor.Localizable, mpicbg.imglib.cursor.LocalizableCursor<T>)
    • mpicbg.imglib.cursor.special.SortedGrayLevelIteratorAllContainers<T>
    • mpicbg.imglib.cursor.special.SortedGrayLevelIteratorArrayContainerOnly<T>
  • bdv.util.AbstractSource<T> (implements bdv.viewer.Source<T>)
    • bdv.util.RandomAccessibleIntervalMipmapSource<T>
    • bdv.util.RandomAccessibleIntervalSource<T>
      • bdv.img.BwRandomAccessibleIntervalSource<T>
    • bdv.util.RandomAccessibleIntervalSource4D<T>
    • bdv.util.RandomAccessibleSource<T>
    • bdv.util.RandomAccessibleSource4D<T>
    • bdv.util.VolatileRandomAccessibleIntervalMipmapSource<T,V>
  • mpicbg.imglib.cursor.special.AbstractSpecialCursor<T> (implements mpicbg.imglib.cursor.LocalizableCursor<T>)
    • mpicbg.imglib.cursor.special.CoordsCursor<T>
      • mpicbg.imglib.cursor.special.DomainCursor<T>
        • mpicbg.imglib.cursor.special.DiscCursor<T>
        • mpicbg.imglib.cursor.special.SphereCursor<T>
  • mpicbg.spim.data.generic.AbstractSpimData<S>
    • mpicbg.spim.data.SpimData
      • spim.fiji.spimdata.SpimData2
    • bdv.spimdata.SpimDataMinimal
  • bdv.AbstractSpimSource<T> (implements bdv.viewer.Source<T>)
    • bdv.SpimSource<T>
    • bdv.VolatileSpimSource<V> (implements bdv.viewer.render.MipmapOrdering)
  • bdv.AbstractSpimSource.ImgKey
  • fiji.plugin.trackmate.features.spot.AbstractSpotFeatureAnalyzer<T> (implements net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.MultiThreaded, fiji.plugin.trackmate.features.spot.SpotAnalyzer<T>)
    • fiji.plugin.trackmate.features.spot.SpotContrastAndSNRAnalyzer<T>
    • fiji.plugin.trackmate.features.spot.SpotFitEllipseAnalyzer<T>
    • fiji.plugin.trackmate.features.spot.SpotIntensityMultiCAnalyzer<T>
    • fiji.plugin.trackmate.features.spot.SpotShapeAnalyzer<T>
  • javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
    • bdv.gui.BigwarpLandmarkSelectionPanel.PointSelectorTableModel
    • spim.fiji.spimdata.explorer.interestpoint.InterestPointTableModel (implements spim.fiji.spimdata.explorer.interestpoint.InterestPointOverlay.InterestPointSource)
    • bigwarp.landmarks.LandmarkTableModel (implements bdv.viewer.TransformListener<A>)
    • org.imagearchive.lsm.toolbox.gui.LsmImageTableModel
    • spim.fiji.spimdata.explorer.registration.RegistrationTableModel
    • bdv.ui.sourcetable.SourceTableModel
    • spim.fiji.spimdata.explorer.ViewSetupTableModel<AS>
  • fiji.plugin.trackmate.action.AbstractTMAction (implements fiji.plugin.trackmate.action.TrackMateAction)
    • fiji.plugin.trackmate.action.CaptureOverlayAction
    • fiji.plugin.trackmate.action.CloseGapsByLinearInterpolationAction
    • fiji.plugin.trackmate.action.ExportAllSpotsStatsAction
    • fiji.plugin.trackmate.action.ExportStatsTablesAction
    • fiji.plugin.trackmate.action.ExportTracksToXML
    • fiji.plugin.trackmate.action.ExtractTrackStackAction
    • fiji.plugin.trackmate.action.IcyTrackExporter
    • fiji.plugin.trackmate.action.ISBIChallengeExporter
    • fiji.plugin.trackmate.action.LabelImgExporter
    • fiji.plugin.trackmate.action.MergeFileAction
    • fiji.plugin.trackmate.action.PlotNSpotsVsTimeAction
    • fiji.plugin.trackmate.action.RecomputeFeatureAction
    • fiji.plugin.trackmate.action.ResetSpotTimeFeatureAction
    • fiji.plugin.trackmate.action.SpotGaussianFitter.SpotGaussianFitterAction
    • fiji.plugin.trackmate.action.TrackBranchAnalysis
    • fiji.plugin.trackmate.action.TrimNotVisibleAction
  • fiji.tool.AbstractTool (implements ij.ImageListener, ij.plugin.PlugIn, java.awt.event.WindowFocusListener)
    • fiji.tool.AbstractTrackingTool (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener, fiji.tool.SliceListener)
      • sc.fiji.timelapse.LOI_Interpolator_Tool (implements java.awt.event.KeyListener, java.awt.event.MouseWheelListener, fiji.tool.ToolToggleListener, fiji.tool.ToolWithOptions)
      • sc.fiji.timelapse.Peak_Counter_Tool (implements java.awt.event.KeyListener, fiji.tool.ToolWithOptions)
      • selection.Select_Points (implements fiji.tool.ToolToggleListener, fiji.tool.ToolWithOptions)
    • fiji.util.ArrowTool (implements java.awt.event.ActionListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, fiji.tool.ToolWithOptions)
    • plugin.Lasso_ (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener, fiji.tool.ToolWithOptions)
    • tools.RoiPicker (implements java.awt.event.ActionListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, fiji.tool.ToolWithOptions)
    • fiji.plugin.trackmate.visualization.hyperstack.SpotEditTool (implements java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, fiji.tool.ToolWithOptions)
  • fiji.tool.AbstractTool.KeyProxy (implements java.awt.event.KeyListener)
  • fiji.tool.AbstractTool.KeyProxyIfNotConsumed (implements java.awt.event.KeyListener)
  • fiji.tool.AbstractTool.MouseMotionProxy (implements java.awt.event.MouseMotionListener)
  • fiji.tool.AbstractTool.MouseMotionProxyIfNotConsumed (implements java.awt.event.MouseMotionListener)
  • fiji.tool.AbstractTool.MouseProxy (implements java.awt.event.MouseListener)
  • fiji.tool.AbstractTool.MouseWheelProxy (implements java.awt.event.MouseWheelListener)
  • fiji.tool.AbstractTool.MouseWheelProxyIfNotConsumed (implements java.awt.event.MouseWheelListener)
  • fiji.plugin.trackmate.features.track.AbstractTrackAnalyzer (implements fiji.plugin.trackmate.features.track.TrackAnalyzer)
    • fiji.plugin.trackmate.features.track.TrackBranchingAnalyzer
    • fiji.plugin.trackmate.features.track.TrackDurationAnalyzer
    • fiji.plugin.trackmate.features.track.TrackLocationAnalyzer
    • fiji.plugin.trackmate.features.track.TrackSpeedStatisticsAnalyzer
    • fiji.plugin.trackmate.features.track.TrackSpotQualityFeatureAnalyzer
  • fiji.plugin.trackmate.visualization.AbstractTrackMateModelView (implements fiji.plugin.trackmate.ModelChangeListener, fiji.plugin.trackmate.SelectionChangeListener, fiji.plugin.trackmate.visualization.TrackMateModelView)
    • fiji.plugin.trackmate.visualization.hyperstack.HyperStackDisplayer
    • fiji.plugin.trackmate.visualization.trackscheme.TrackScheme
  • bdv.tools.boundingbox.AbstractTransformedBoxModel (implements bdv.tools.boundingbox.TransformedBox)
    • bdv.tools.boundingbox.TransformedBoxModel
    • bdv.tools.boundingbox.TransformedRealBoxModel (implements bdv.tools.boundingbox.RealBoxSelectionPanel.RealBox)
  • mpicbg.ij.stack.AbstractTransformMapping<T> (implements mpicbg.ij.stack.Mapping<T>)
    • mpicbg.ij.stack.InverseTransformMapping<T>
    • mpicbg.ij.stack.TransformMapping<T>
  • mpicbg.ij.stack.AbstractTransformMapping.Interpolator
    • mpicbg.ij.stack.AbstractTransformMapping.ByteInterpolator
    • mpicbg.ij.stack.AbstractTransformMapping.FloatInterpolator
    • mpicbg.ij.stack.AbstractTransformMapping.RGBInterpolator
    • mpicbg.ij.stack.AbstractTransformMapping.ShortInterpolator
  • org.jdesktop.swingx.treetable.AbstractTreeTableModel (implements org.jdesktop.swingx.treetable.TreeTableModel)
    • net.imagej.ui.swing.ops.OpTreeTableModel
  • ini.trakem2.tree.AbstractTreeTransferHandler (implements java.awt.dnd.DragGestureListener, java.awt.dnd.DragSourceListener, java.awt.dnd.DropTargetListener)
    • ini.trakem2.tree.DefaultTreeTransferHandler
  • javax.swing.undo.AbstractUndoableEdit (implements java.io.Serializable, javax.swing.undo.UndoableEdit)
    • bigwarp.landmarks.actions.AbstractPointEdit
      • bigwarp.landmarks.actions.AddPointEdit
      • bigwarp.landmarks.actions.DeleteRowEdit
      • bigwarp.landmarks.actions.ModifyPointEdit
    • javax.swing.undo.CompoundEdit
      • javax.swing.undo.UndoManager (implements javax.swing.event.UndoableEditListener)
        • bigwarp.landmarks.actions.LandmarkUndoManager
  • mpicbg.imglib.cursor.vector.AbstractVector<V>
    • mpicbg.imglib.cursor.vector.Vector
    • mpicbg.imglib.cursor.vector.Vector1d
    • mpicbg.imglib.cursor.vector.Vector2d
    • mpicbg.imglib.cursor.vector.Vector3d
    • mpicbg.imglib.cursor.vector.Vector4d
  • bdv.AbstractViewerSetupImgLoader<T,V> (implements bdv.ViewerSetupImgLoader<T,V>)
    • bdv.AbstractCachedViewerSetupImgLoader<T,V,A>
    • bdv.img.catmaid.CatmaidImageLoader (implements bdv.ViewerImgLoader)
    • bdv.img.hdf5.Hdf5ImageLoader.SetupImgLoader (implements mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader<T>)
    • bdv.img.imaris.ImarisImageLoader.SetupImgLoader
    • bdv.img.n5.N5ImageLoader.SetupImgLoader<T,V> (implements mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader<T>)
    • bdv.img.openconnectome.OpenConnectomeImageLoader (implements bdv.ViewerImgLoader)
    • bdv.img.remote.RemoteImageLoader.SetupImgLoader
    • bdv.img.virtualstack.VirtualStackImageLoader.SetupImgLoader
  • net.imglib2.AbstractWrappedRealInterval<I> (implements net.imglib2.RealInterval)
    • net.imglib2.AbstractWrappedInterval<I> (implements net.imglib2.Interval)
      • org.janelia.utility.OuterProductView<T,U,V> (implements net.imglib2.RandomAccessibleInterval<T>)
      • bdv.util.volatiles.VolatileRandomAccessibleIntervalView<T,V> (implements net.imglib2.RandomAccessibleInterval<T>, bdv.util.volatiles.VolatileView<T,V>)
  • bdv.viewer.render.AccumulateProjector<A,B> (implements bdv.viewer.render.VolatileProjector)
    • bdv.viewer.render.AccumulateProjectorARGB.AccumulateProjectorARGBGeneric
  • bdv.viewer.render.AccumulateProjectorARGB (implements bdv.viewer.render.VolatileProjector)
  • sc.fiji.coloc.algorithms.Accumulator<T>
  • org.scijava.ui.behaviour.util.Actions
    • bdv.BigDataViewerActions
    • bdv.viewer.NavigationActions
    • bdv.viewer.WarpNavigationActions
  • mpicbg.imglib.algorithm.scalespace.AdaptiveNonMaximalSuppression<T> (implements mpicbg.imglib.algorithm.Algorithm, mpicbg.imglib.algorithm.Benchmark)
  • imglib.ops.operator.binary.Add (implements imglib.ops.operator.BinaryOperator)
  • sc.fiji.i5d.plugin.Add_Empty_Channel (implements ij.plugin.PlugIn)
  • video2.Add_Empty_Frame (implements ij.plugin.filter.PlugInFilter)
  • sc.fiji.i5d.plugin.Add_Empty_Slice (implements ij.plugin.PlugIn)
  • ini.trakem2.display.graphics.AddARGBComposite (implements java.awt.Composite)
  • imglib.ops.operator.unary.AddConstant (implements imglib.ops.operator.UnaryOperator)
  • imglib.ops.operator.unary.AddNoise (implements imglib.ops.operator.UnaryOperator)
  • mpicbg.spim.postprocessing.deconvolution2.AdjustInput
  • spim.process.fusion.deconvolution.AdjustInput
  • bdv.util.Affine3DHelpers
  • landmarks.AffineFromLandmarks.CandidateAffine (implements pal.math.MultivariateFunction)
  • bdv.img.remote.AffineTransform3DJsonSerializer (implements com.google.gson.JsonDeserializer<T>, com.google.gson.JsonSerializer<T>)
  • ini.trakem2.display.AffineTransformMode (implements ini.trakem2.display.Mode)
  • sc.fiji.coloc.algorithms.Algorithm<T>
    • sc.fiji.coloc.algorithms.AutoThresholdRegression<T>
    • sc.fiji.coloc.algorithms.CostesSignificanceTest<T>
    • sc.fiji.coloc.algorithms.Histogram2D<T>
      • sc.fiji.coloc.algorithms.LiHistogram2D<T>
    • sc.fiji.coloc.algorithms.InputCheck<T>
    • sc.fiji.coloc.algorithms.KendallTauRankCorrelation<T>
    • sc.fiji.coloc.algorithms.LiICQ<T>
    • sc.fiji.coloc.algorithms.MandersColocalization<T>
    • sc.fiji.coloc.algorithms.PearsonsCorrelation<T>
    • sc.fiji.coloc.algorithms.SpearmanRankCorrelation<T>
  • script.imglib.algorithm.fn.AlgorithmUtil
  • mpicbg.trakem2.align.Align
  • Align_Image (implements ij.plugin.PlugIn)
  • Align_Image.Interpolator
    • Align_Image.BilinearInterpolator
  • mpicbg.trakem2.align.Align.Param (implements java.io.Serializable)
    • mpicbg.trakem2.align.Align.ParamOptimize
  • mpicbg.trakem2.align.AlignLayersTask
  • mpicbg.trakem2.align.AlignmentUtils
  • mpicbg.trakem2.align.AlignmentUtils.ParamPointMatch (implements java.io.Serializable)
  • mpicbg.ij.plugin.AlignStacksWithLandmarks (implements ij.plugin.PlugIn)
  • mpicbg.trakem2.align.AlignTask
  • mpicbg.trakem2.align.AlignTask.ReferenceData
  • mpicbg.imglib.algorithm.labeling.AllConnectedComponents
  • mpicbg.imglib.algorithm.labeling.AllConnectedComponents.PositionStack
  • sc.fiji.snt.annotation.AllenCompartment (implements sc.fiji.snt.annotation.BrainAnnotation)
  • sc.fiji.snt.annotation.AllenUtils
  • fiji.plugin.trackmate.util.AlphanumComparator (implements java.util.Comparator<T>)
  • ini.trakem2.io.AmiraImporter
  • amira.AmiraMeshDecoder
  • amira.AmiraMeshEncoder
  • AmiraMeshWriter_ (implements ij.plugin.PlugIn)
  • amira.AmiraParameters
  • amira.AmiraParameters.Material
  • isosurface.AmiraSurface (implements ij.plugin.PlugIn)
    • ShowAmiraSurface_
  • amira.AmiraTableEncoder
  • AmiraTableWriter_ (implements ij.plugin.PlugIn)
  • QuickPALM.Analyse_Particles (implements ij.plugin.PlugIn)
  • sc.fiji.coloc.results.AnalysisResults<T> (implements sc.fiji.coloc.results.ResultHandler<T>)
  • sc.fiji.io.Analyze_Writer (implements ij.plugin.PlugIn)
  • sc.fiji.analyzeSkeleton.AnalyzeSkeleton_ (implements ij.gui.DialogListener, ij.plugin.filter.PlugInFilter)
  • imglib.ops.condition.And<T> (implements imglib.ops.condition.Condition<T>)
  • imglib.ops.operator.binary.And (implements imglib.ops.operator.BinaryOperator)
  • imglib.ops.operator.unary.AndConstant (implements imglib.ops.operator.UnaryOperator)
  • view5d.AnElement
    • view5d.ByteElement
    • view5d.ComplexElement
    • view5d.DoubleElement
    • view5d.FloatElement
    • view5d.IntegerElement
    • view5d.ShortElement
    • view5d.UnsignedShortElement
  • sc.fiji.io.Animated_Gif_Reader (implements ij.plugin.PlugIn)
  • anisotropic_diffusion.Anisotropic_Diffusion_2D (implements ij.plugin.filter.PlugInFilter)
  • mpicbg.imglib.algorithm.pde.AnisotropicDiffusion.StrongEdgeEnhancer (implements mpicbg.imglib.algorithm.pde.AnisotropicDiffusion.DiffusionFunction)
  • mpicbg.imglib.algorithm.pde.AnisotropicDiffusion.WideRegionEnhancer (implements mpicbg.imglib.algorithm.pde.AnisotropicDiffusion.DiffusionFunction)
  • sc.fiji.snt.viewer.Annotation3D
  • sc.fiji.snt.analysis.graph.AnnotationGraphUtils
  • octree.AppearanceCreator (implements ij3d.AxisConstants)
  • voltex.AppearanceCreator (implements ij3d.AxisConstants)
  • spim.process.fusion.export.AppendSpimData2 (implements spim.process.fusion.export.ImgExport)
  • spim.process.fusion.export.AppendSpimData2HDF5 (implements spim.process.fusion.export.ImgExport)
  • fiji.plugin.Apply_External_Transformation (implements ij.plugin.PlugIn)
  • spim.fiji.plugin.Apply_Transformation (implements ij.plugin.PlugIn)
  • bdv.ij.ApplyBigwarpPlugin (implements ij.plugin.PlugIn)
  • bdv.ij.ApplyBigwarpPlugin.WriteDestinationOptions
  • spim.fiji.plugin.apply.ApplyParameters
  • spim.fiji.spimdata.explorer.popup.ApplyTransformationPopup.MyActionListener (implements java.awt.event.ActionListener)
  • edu.utexas.clm.archipelago.network.client.ArchipelagoClient (implements edu.utexas.clm.archipelago.listen.TransceiverListener)
  • edu.utexas.clm.archipelago.compute.ArchipelagoFuture<T> (implements java.util.concurrent.Future<V>)
  • edu.utexas.clm.archipelago.network.server.ArchipelagoServer (implements edu.utexas.clm.archipelago.listen.ClusterStateListener)
  • edu.utexas.archipelago.ArchipelagoUtils
  • client.ArchiveClient
  • fiji.geom.AreaCalculations
  • fiji.geom.AreaCalculations.Calculation
    • fiji.geom.AreaCalculations.Area
    • fiji.geom.AreaCalculations.Centroid
    • fiji.geom.AreaCalculations.Circumference
  • edu.utexas.clm.crop.AreaList_Crop (implements ini.trakem2.plugin.TPlugIn)
  • edu.utexas.clm.crop.AreaListCrop
  • ini.trakem2.utils.AreaUtils
  • ini.trakem2.display.AreaWrapper
  • ini.trakem2.display.AreaWrapper.PaintParameters
  • net.imglib2.display.ARGBARGBColorConverter<R> (implements net.imglib2.display.ColorConverter, net.imglib2.converter.Converter<A,B>)
    • net.imglib2.display.ARGBARGBColorConverter.ToGray
    • net.imglib2.display.ARGBARGBColorConverter.VolatileToGray
  • net.imglib2.display.ARGBtoRandomARGBColorConverter<R> (implements net.imglib2.display.ColorConverter, net.imglib2.converter.Converter<A,B>)
    • net.imglib2.display.ARGBtoRandomARGBColorConverter.ToGray
    • net.imglib2.display.ARGBtoRandomARGBColorConverter.VolatileToGray
  • fiji.util.ArrayBase<ArrayType,BaseType> (implements java.lang.Iterable<T>)
    • fiji.util.DoubleArray
    • fiji.util.FloatArray
    • fiji.util.IntArray
  • mpi.fruitfly.general.ArrayConverter
  • sc.fiji.snt.tracing.image.ArraySearchImage<V> (implements sc.fiji.snt.tracing.image.SearchImage<V>)
  • org.janelia.utility.arrays.ArraySortedIndices
  • util.Arrow
  • fiji.util.ArrowShape (implements java.awt.Shape)
  • weka.attributeSelection.ASEvaluation (implements weka.core.CapabilitiesHandler, weka.core.CapabilitiesIgnorer, weka.core.CommandlineRunnable, weka.core.RevisionHandler, java.io.Serializable)
    • hr.irb.fastRandomForest.FRFAttributeEval (implements weka.attributeSelection.AttributeEvaluator)
  • imglib.ops.operation.AssignOperation<T>
  • ai.AttributeClassPair
  • vib.AugmentedLandmarkWarp_ (implements ij.plugin.filter.PlugInFilter)
  • fiji.threshold.Auto_Threshold (implements ij.plugin.PlugIn)
  • oldsegmenters.AutoLabeller
    • oldsegmenters.AutoLabellerNaive
  • oldsegmenters.AutoLabeller.LabelStats (implements java.lang.Comparable<T>)
  • mpicbg.spim.preprocessing.AutomaticAngleSetup
  • imglib.ops.operator.binary.Average (implements imglib.ops.operator.BinaryOperator)
  • Average_Color (implements ij.plugin.filter.PlugInFilter)
  • vib.Average_Images (implements ij.plugin.PlugIn)
  • util.Average_Torsten_Results (implements ij.plugin.PlugIn)
  • vib.AverageBrain_ (implements ij.plugin.filter.PlugInFilter)
  • mpicbg.spim.fusion.AverageContentFactory (implements mpicbg.spim.fusion.IsolatedPixelWeightenerFactory<I>)
  • mpicbg.stitching.fusion.AveragePixelFusion (implements mpicbg.stitching.fusion.PixelFusion)
    • mpicbg.stitching.fusion.AveragePixelFusionIgnoreZero
  • imglib.ops.function.pn.AvgFunction<T> (implements imglib.ops.function.RealFunction<T>)
  • java.awt.AWTEventMulticaster (implements java.awt.event.ActionListener, java.awt.event.AdjustmentListener, java.awt.event.ComponentListener, java.awt.event.ContainerListener, java.awt.event.FocusListener, java.awt.event.HierarchyBoundsListener, java.awt.event.HierarchyListener, java.awt.event.InputMethodListener, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, java.awt.event.TextListener, java.awt.event.WindowFocusListener, java.awt.event.WindowListener, java.awt.event.WindowStateListener)
    • IJEventMulticaster (implements DisplayChangeListener)
  • bdv.util.AWTUtils
  • spim.vecmath.AxisAngle4d (implements java.lang.Cloneable, java.io.Serializable)
  • spim.vecmath.AxisAngle4f (implements java.lang.Cloneable, java.io.Serializable)
  • imglib.ops.condition.AxisLessThan<T> (implements imglib.ops.condition.Condition<T>)
  • ai.BalancedRandomTree (implements java.io.Serializable)
  • sc.fiji.balloonSegmentation.structure.BalloonPopulation
  • sc.fiji.balloonSegmentation.structure.BalloonSequence
  • levelsets.algorithm.BandElementCache
  • mpicbg.imglib.algorithm.fft.Bandpass<T> (implements mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • bdv.viewer.BasicViewerState (implements bdv.viewer.ViewerState)
  • edu.utexas.archipelago.plugin.Batch_Weka_Segmentation (implements ij.plugin.PlugIn)
  • org.imagearchive.lsm.toolbox.BatchConverter
  • vib.BatchLog_ (implements ij.plugin.PlugIn)
  • util.BatchOpener
  • util.BatchOpener.ChannelsAndLoader
  • edu.utexas.archipelago.segmentation.BatchWekaSegmentation
  • edu.utexas.archipelago.segmentation.BatchWekaSegmentation.WekaSegmentationCallable (implements java.util.concurrent.Callable<V>, java.io.Serializable)
  • mpicbg.spim.postprocessing.deconvolution2.BayesMVDeconvolution (implements mpicbg.spim.postprocessing.deconvolution2.Deconvolver)
  • bdv.ui.BdvDefaultCards
  • bdv.util.BdvFunctions
  • bdv.util.BdvHandle (implements bdv.util.Bdv)
    • bdv.util.BdvHandleFrame
    • bdv.util.BdvHandlePanel
  • bdv.img.n5.BdvN5Format
  • bdv.util.BdvOptions
  • bdv.util.BdvOptions.Values
  • bdv.util.BdvOverlay (implements bdv.viewer.OverlayRenderer)
    • bdv.util.PointsOverlay
  • spim.fiji.spimdata.explorer.popup.BDVPopup.MyActionListener (implements java.awt.event.ActionListener)
  • bdv.util.BdvSource (implements bdv.util.Bdv)
    • bdv.util.BdvOverlaySource<O>
      • bdv.util.BdvPointsSource
    • bdv.util.BdvStackSource<T>
    • bdv.util.BdvVirtualChannelSource
  • fiji.plugin.Bead_Registration (implements ij.plugin.PlugIn)
  • mpicbg.spim.registration.bead.BeadRegistration
  • mpicbg.spim.registration.bead.BeadSegmentation
  • org.imagearchive.lsm.toolbox.info.scaninfo.BeamSplitter
  • hr.irb.fastRandomForest.Benchmark
  • net.imglib2.algorithm.BenchmarkAlgorithm (implements net.imglib2.algorithm.Algorithm, net.imglib2.algorithm.Benchmark)
    • fiji.plugin.trackmate.tracking.sparselap.linker.JaqamanLinker<K,J> (implements net.imglib2.algorithm.OutputAlgorithm<F>)
    • fiji.plugin.trackmate.detection.util.MedianFilter2D<T> (implements net.imglib2.algorithm.OutputAlgorithm<F>)
  • mpicbg.imglib.algorithm.BenchmarkAlgorithm (implements mpicbg.imglib.algorithm.Algorithm, mpicbg.imglib.algorithm.Benchmark)
  • inference.BEPBInference
    • inference.BEPBBinBoundariesInference (implements inference.InferenceCaller)
    • inference.BEPBModelInference (implements inference.InferenceCaller)
  • loci.plugins.BF
  • bdv.ij.BigDataBrowserPlugIn (implements org.scijava.command.Command)
  • bdv.BigDataViewer
  • bdv.ij.BigDataViewerPlugIn (implements org.scijava.command.Command)
  • spim.fiji.plugin.apply.BigDataViewerTransformationWindow
  • spim.fiji.plugin.apply.BigDataViewerTransformationWindow.ApplyButtonListener (implements java.awt.event.ActionListener)
  • spim.fiji.plugin.apply.BigDataViewerTransformationWindow.CancelButtonListener (implements java.awt.event.ActionListener)
  • bigwarp.BigWarp<T>
  • bigwarp.BigWarp.BigWarpData<T>
  • bigwarp.BigWarp.LandmarkModeListener (implements java.awt.KeyEventPostProcessor)
  • bigwarp.BigWarp.LandmarkTableListener (implements javax.swing.event.TableModelListener)
  • bigwarp.BigWarp.MouseLandmarkListener (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
  • bigwarp.BigWarp.MouseLandmarkTableListener (implements java.awt.event.MouseListener)
  • bigwarp.BigWarpActions
  • bigwarp.BigWarpAutoSaver
  • bigwarp.BigWarpBatchTransform
  • bigwarp.BigWarpBatchTransformFOV
  • bigwarp.BigWarpBatchTransformFOV.DummyImageLoader<T> (implements mpicbg.spim.data.generic.sequence.TypedBasicImgLoader<T>)
  • bdv.ij.BigWarpBdvCommand (implements org.scijava.command.Command)
  • bdv.viewer.BigWarpConverterSetupWrapper (implements bdv.tools.brightness.ConverterSetup)
  • bdv.viewer.BigWarpDragOverlay
  • bdv.viewer.BigWarpDragOverlay.WarpDragMouseListener (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
  • bigwarp.BigWarpExporter<T>
    • bigwarp.BigWarpARGBExporter
    • bigwarp.BigWarpRealExporter<T>
  • bdv.ij.BigWarpImagePlusPlugIn (implements ij.plugin.PlugIn)
  • bigwarp.BigWarpInit
  • bdv.gui.BigWarpMessageAnimator
  • bdv.viewer.BigWarpOverlay
  • bdv.ij.BigWarpToDeformationFieldPlugIn (implements ij.plugin.PlugIn)
  • bigwarp.transforms.BigWarpTransform
  • bigwarp.util.BigWarpUtils
  • bdv.gui.BigWarpViewerOptions.BwValues
  • bdv.viewer.BigWarpViewerSettings
  • Bilateral_Filter (implements ij.plugin.filter.PlugInFilter)
  • vib.BilateralFilter
  • fiji.selection.Binary_to_Point_Selection (implements ij.plugin.filter.PlugInFilter)
  • mpicbg.imglib.algorithm.labeling.BinaryInterpolation2D (implements mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • ini.trakem2.imaging.BinaryInterpolation2D (implements mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • vib.BinaryInterpolator
    • vib.IDT_Interpolate_Binary (implements ij.plugin.filter.PlugInFilter)
  • imglib.ops.function.p2.BinaryOperatorFunction<T> (implements imglib.ops.function.RealFunction<T>)
  • pal.math.Binomial (implements java.io.Serializable)
  • Biorad_Writer (implements ij.plugin.PlugIn)
  • sc.fiji.snt.tracing.artist.BiSearchArtist (implements sc.fiji.snt.tracing.artist.SearchArtist)
  • sc.fiji.snt.tracing.BiSearchNode (implements sc.fiji.snt.tracing.SearchNode)
  • mpicbg.imglib.container.basictypecontainer.array.BitArray (implements mpicbg.imglib.container.basictypecontainer.array.ArrayDataAccess<A>, mpicbg.imglib.container.basictypecontainer.BitAccess)
  • customnode.u3d.BitStreamRead
  • customnode.u3d.BitStreamWrite
  • emblcmci.BleachCorrection (implements ij.plugin.filter.PlugInFilter)
  • emblcmci.BleachCorrection_ExpoFit
  • emblcmci.BleachCorrection_MH
  • emblcmci.BleachCorrection_SimpleRatio
  • spim.process.fusion.weights.Blending (implements net.imglib2.RealRandomAccessible<T>)
  • ini.trakem2.imaging.Blending
  • mpicbg.spim.fusion.BlendingFactory (implements mpicbg.spim.fusion.CombinedPixelWeightenerFactory<I>)
  • mpicbg.stitching.fusion.BlendingPixelFusion (implements mpicbg.stitching.fusion.PixelFusion)
    • mpicbg.stitching.fusion.BlendingPixelFusionIgnoreZero
  • spim.process.fusion.weights.BlendingRealRandomAccess (implements net.imglib2.RealRandomAccess<T>)
  • mpicbg.spim.fusion.BlendingSimpleFactory (implements mpicbg.spim.fusion.CombinedPixelWeightenerFactory<I>)
  • ij3d.segmentation.Blob_Segmentation_in_3D (implements ij.plugin.PlugIn)
  • ij3d.segmentation.Blob_Segmentation_in_3D.GrowBlob.Blob
  • mpicbg.spim.postprocessing.deconvolution2.Block
  • spim.process.cuda.Block
  • spim.process.cuda.BlockGeneratorFixedSizePrecise (implements spim.process.cuda.BlockGenerator<T>)
  • spim.process.cuda.BlockGeneratorVariableSizePrecise (implements spim.process.cuda.BlockGenerator<T>)
  • spim.process.cuda.BlockGeneratorVariableSizeSimple (implements spim.process.cuda.BlockGenerator<T>)
  • net.imglib2.cache.queue.BlockingFetchQueues<E>
    • bdv.util.volatiles.SharedQueue (implements bdv.cache.CacheControl)
  • mpicbg.ij.blockmatching.BlockMatching
  • mpicbg.trakem2.align.concurrent.BlockMatchPairCallable (implements java.util.concurrent.Callable<V>, java.io.Serializable)
  • mpicbg.trakem2.align.concurrent.BlockMatchPairCallable.BlockMatchResults (implements java.io.Serializable)
  • mpicbg.ij.integral.BlockPMCC
  • mpicbg.ij.integral.BlockStatistics
    • mpicbg.ij.integral.NormalizeLocalContrast
    • mpicbg.ij.integral.RemoveOutliers
  • bdv.tools.bookmarks.Bookmarks
  • bdv.tools.bookmarks.BookmarksEditor
  • bdv.tools.bookmarks.BookmarkTextOverlayAnimator (implements bdv.viewer.animate.OverlayAnimator)
  • math3d.Bookstein
    • vib.transforms.BooksteinTransform (implements vib.transforms.Transform)
  • math3d.Bookstein.Bookstein1d
  • vib.segment.Border (implements java.lang.Cloneable)
  • bdv.util.BoundedInterval
  • bdv.util.BoundedIntervalDouble
    • bdv.tools.brightness.MinMaxGroup
  • bdv.util.BoundedRange
  • fiji.plugin.trackmate.gui.displaysettings.BoundedValue
  • bdv.util.BoundedValue
  • fiji.plugin.trackmate.gui.displaysettings.BoundedValueDouble
  • bdv.util.BoundedValueDouble
  • spim.fiji.spimdata.boundingbox.BoundingBox (implements java.lang.Comparable<T>, net.imglib2.Interval)
    • spim.process.fusion.boundingbox.BoundingBoxGUI
      • spim.process.fusion.boundingbox.AutomaticBoundingBox
      • spim.process.fusion.boundingbox.AutomaticReorientation
      • spim.process.fusion.boundingbox.BigDataViewerBoundingBox
      • spim.process.fusion.boundingbox.PreDefinedBoundingBox
  • mpicbg.imglib.labeling.BoundingBox
  • sc.fiji.snt.util.BoundingBox
  • spim.fiji.spimdata.boundingbox.BoundingBoxes
  • spim.process.fusion.boundingbox.BoundingBoxGUI.ManageListeners
  • spim.fiji.spimdata.explorer.popup.BoundingBoxPopup.MyActionListener (implements java.awt.event.ActionListener)
  • bdv.tools.boundingbox.BoundingBoxUtil
  • bdv.util.Bounds
  • pal.math.BoundsCheckedFunction (implements pal.math.MultivariateFunction)
  • vib.transforms.BoundsInclusive
  • bdv.tools.boundingbox.BoxRealRandomAccessible<T> (implements net.imglib2.RealRandomAccessible<T>)
  • bdv.tools.boundingbox.BoxSelectionOptions
  • bdv.tools.boundingbox.BoxSelectionOptions.Values
  • fiji.plugin.trackmate.visualization.table.BranchTableView.Branch (implements java.lang.Comparable<T>)
  • util.Bresenham3D
  • util.Bresenham3D.IntegerPoint
  • math.BSpline
  • bunwarpj.BSplineModel (implements java.lang.Runnable)
  • ini.trakem2.display.Bucket
  • levelsets.filter.BufferedImageBuilder (implements java.awt.image.ImageConsumer)
  • bdv.viewer.render.awt.BufferedImageOverlayRenderer (implements bdv.viewer.OverlayRenderer, bdv.viewer.render.RenderTarget<R>)
  • bdv.viewer.render.awt.BufferedImageRenderResult (implements bdv.viewer.render.RenderResult)
  • Bug_Submitter.Bug_Submitter (implements ij.plugin.PlugIn)
  • view5d.Bundle (implements java.lang.Cloneable)
  • bunwarpj.bUnwarpJ_ (implements ij.plugin.PlugIn)
  • bigwarp.metadata.BwN5ViewerMultiscaleMetadataParser (implements org.janelia.saalfeldlab.n5.metadata.N5GroupParser<T>)
  • mpicbg.imglib.container.basictypecontainer.array.ByteArray (implements mpicbg.imglib.container.basictypecontainer.array.ArrayDataAccess<A>, mpicbg.imglib.container.basictypecontainer.ByteAccess)
    • mpicbg.imglib.wrapper.ExistingByteArrays
  • org.janelia.it.jacs.shared.ffmpeg.ByteGatherAcceptor (implements org.janelia.it.jacs.shared.ffmpeg.FFMPGByteAcceptor)
  • adt.ByteProbability
  • ini.trakem2.persistence.Cache
  • bdv.cache.CacheControl.CacheControls (implements bdv.cache.CacheControl)
  • bdv.cache.CacheControl.Dummy (implements bdv.cache.CacheControl)
  • Calculator_Plus (implements ij.plugin.PlugIn)
  • spim.fiji.spimdata.imgloaders.CalibratedImg<T>
  • ij.measure.Calibration (implements java.lang.Cloneable)
    • sc.fiji.i5d.cal.Calibration5D
  • spim.fiji.spimdata.imgloaders.Calibration
  • loci.plugins.in.Calibrator
  • sc.fiji.snt.plugin.ij1.CallIJ1LegacyCmd (implements org.scijava.command.Command)
  • levelsets.filter.Canny (implements levelsets.filter.Filter)
  • mpicbg.imglib.algorithm.CanvasImage<T> (implements mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • fiji.plugin.trackmate.action.CaptureOverlayAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • bdv.ui.CardPanel
  • bdv.img.catmaid.CatmaidVolatileIntArrayLoader (implements bdv.img.cache.CacheArrayLoader<A>)
  • mpicbg.imglib.container.cell.Cell<T,A>
  • sc.fiji.cellCounter.CellCntrMarker
  • loci.plugins.config.CellSensWidgets (implements loci.plugins.config.IFormatWidgets, java.awt.event.ItemListener)
  • bdv.ij.export.tiles.CellVoyagerDataExporter
  • bdv.ij.export.tiles.CellVoyagerDataExporter.ChannelInfo
  • vib.Center_Transformation (implements ij.plugin.PlugIn)
  • sc.fiji.balloonSegmentation.utils.CenterlineSlice
  • spim.process.interestpointregistration.centerofmass.CenterOfMassPairwise (implements java.util.concurrent.Callable<V>)
  • ini.trakem2.analysis.Centrality
  • ini.trakem2.analysis.Centrality.EtchingStep<T> (implements java.util.Map.Entry<K,V>)
  • bdv.spimdata.tools.ChangeAttributeId
  • bdv.spimdata.tools.ChangeViewSetupId
  • sc.fiji.i5d.cal.ChannelCalibration
  • sc.fiji.i5d.cal.ChannelDisplayProperties
  • org.imagearchive.lsm.reader.info.ChannelNamesAndColors
  • spim.process.interestpointregistration.ChannelProcess
    • spim.fiji.plugin.thinout.ChannelProcessThinOut
  • spim.process.fusion.deconvolution.ChannelPSF
  • org.imagearchive.lsm.toolbox.info.ChannelWavelengthRange
  • mpicbg.imglib.container.basictypecontainer.array.CharArray (implements mpicbg.imglib.container.basictypecontainer.array.ArrayDataAccess<A>, mpicbg.imglib.container.basictypecontainer.CharAccess)
    • mpicbg.imglib.wrapper.ExistingCharArrays
  • fiji.plugin.trackmate.util.ChartExporter
  • script.imglib.analysis.ChartUtils
  • spimopener.Check_Directories (implements ij.plugin.PlugIn)
  • mpicbg.imglib.multithreading.Chunk
  • color.CIELAB
  • fiji.util.Circle_Fitter (implements ij.plugin.filter.PlugInFilter)
  • sc.fiji.timelapse.Circle_Interpolator (implements ij.plugin.filter.PlugInFilter)
  • sc.fiji.snt.util.CircleCursor3D<T> (implements net.imglib2.Cursor<T>)
    • sc.fiji.snt.util.DiskCursor3D<T>
  • vib.edge.CircleIterators
  • ini.trakem2.utils.CircularSequence
  • ini.trakem2.imaging.filters.CLAHE (implements ini.trakem2.imaging.filters.IFilter)
  • trainableSegmentation.metrics.ClassificationStatistics
  • mpicbg.stitching.fusion.ClassifiedRegion
  • sc.fiji.localThickness.Clean_Up_Local_Thickness (implements ij.plugin.filter.PlugInFilter)
  • fiji.plugin.trackmate.action.CloseGapsByLinearInterpolationAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • edu.utexas.clm.archipelago.Cluster
  • edu.utexas.clm.archipelago.example.Cluster_SIFT (implements ij.plugin.PlugIn)
  • edu.utexas.clm.archipelago.example.Cluster_SIFT.SIFTCall (implements edu.utexas.clm.archipelago.compute.SerializableCallable<T>)
  • trainableSegmentation.metrics.ClusteredWarpingMismatches
  • edu.utexas.clm.archipelago.data.ClusterMessage (implements java.io.Serializable)
  • edu.utexas.clm.archipelago.network.node.ClusterNode (implements edu.utexas.clm.archipelago.listen.TransceiverListener)
  • edu.utexas.clm.archipelago.ui.ClusterNodeStatusUI (implements java.awt.event.ActionListener)
  • mpicbg.spim.ClusterReconstruction
  • edu.utexas.clm.archipelago.ui.ClusterUI (implements edu.utexas.clm.archipelago.ui.ArchipelagoUI, edu.utexas.clm.archipelago.listen.ClusterStateListener)
  • edu.utexas.clm.archipelago.ui.ClusterXML
  • util.CMTKTransformation
  • util.CMTKTransformation.Inverse
  • CollectGarbage_ (implements ij.plugin.PlugIn)
  • mpicbg.stitching.CollectionStitchingImgLib
  • sc.fiji.coloc.Coloc_2<T> (implements ij.plugin.PlugIn)
  • sc.fiji.coloc.Coloc_2.BoundingBox
  • sc.fiji.coloc.Coloc_2.MaskInfo
  • sc.fiji.coloc.Colocalisation_Test (implements ij.plugin.PlugIn)
  • sc.fiji.coloc.Colocalisation_Threshold (implements ij.plugin.PlugIn)
  • sc.fiji.coloc.ColocImgLibGadgets<T> (implements ij.plugin.PlugIn)
  • trainableSegmentation.unsupervised.Color_Clustering (implements ij.plugin.PlugIn)
  • Color_Inspector_3D (implements ij.plugin.PlugIn)
  • Color_Inspector_3D.Median_Cut
  • Color_Inspector_3D.WuCq
  • trainableSegmentation.unsupervised.ColorClustering
  • script.imglib.color.fn.ColorFunction (implements script.imglib.math.fn.IFunction, script.imglib.math.fn.ImageComputation<T>)
    • script.imglib.color.HSB
    • script.imglib.color.RGBA
  • script.imglib.color.fn.ColorFunction.Channel (implements script.imglib.math.fn.IFunction)
  • ColorHistogram_ (implements ij.plugin.filter.PlugInFilter)
  • fiji.plugin.trackmate.gui.displaysettings.ColorIcon (implements javax.swing.Icon)
  • bdv.tools.brightness.ColorIcon (implements javax.swing.Icon)
  • loci.plugins.in.Colorizer
  • ColorKLT
  • fiji.plugin.trackmate.gui.displaysettings.Colormap (implements org.jfree.chart.renderer.PaintScale, java.io.Serializable)
  • fiji.plugin.trackmate.gui.displaysettings.ColormapIO
  • sc.fiji.snt.analysis.ColorMapper
    • sc.fiji.snt.analysis.graph.GraphColorMapper<V,E>
    • sc.fiji.snt.analysis.MultiTreeColorMapper
    • sc.fiji.snt.analysis.NodeColorMapper
    • sc.fiji.snt.analysis.TreeColorMapper
      • sc.fiji.snt.viewer.Viewer2D
  • sc.fiji.snt.util.ColorMaps
  • mpicbg.util.ColorStream
  • spim.fiji.spimdata.explorer.util.ColorStream
  • ij3d.ColorTable
  • ini.trakem2.display.graphics.ColorYCbCrComposite (implements java.awt.Composite)
  • sc.fiji.colourDeconvolution.Colour_Deconvolution (implements ij.plugin.PlugIn)
  • util.CombinationGenerator
  • sc.fiji.timelapse.Combine_Profile_Stacks (implements ij.plugin.PlugIn)
  • spimopener.Combine_SPIM_Projects (implements ij.plugin.PlugIn)
  • mpicbg.spim.fusion.CombinedPixelWeightener<I>
    • mpicbg.spim.fusion.Blending
    • mpicbg.spim.fusion.BlendingSimple
  • fiji.util.gui.CommandFinderBase.Action
    • fiji.util.gui.JFrameCommandFinder.JMenuItemAction
  • fiji.util.gui.CommandFinderBase.LevenshteinPair (implements java.lang.Comparable<T>)
  • fiji.util.gui.CommandFinderBase.PromptDocumentListener (implements javax.swing.event.DocumentListener)
  • stitching.CommonFunctions
  • ini.trakem2.analysis.Compare
  • ini.trakem2.analysis.Compare.CATAParameters
  • ini.trakem2.analysis.Compare.Chain
  • process.ComparePair
  • mpicbg.stitching.ComparePair
  • fiji.scripting.Compiler
  • fiji.scripting.Compiler.Result
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Canvas (implements javax.accessibility.Accessible)
      • org.scijava.java3d.Canvas3D
        • ij3d.ImageCanvas3D (implements java.awt.event.KeyListener)
      • sc.fiji.i5d.gui.ChannelControl.ChannelColorCanvas (implements java.awt.event.MouseListener)
      • ini.trakem2.imaging.ContrastPlot
      • vib.segment.ImageButton (implements java.awt.event.MouseListener)
      • ij.gui.ImageCanvas (implements java.lang.Cloneable, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
        • sc.fiji.cellCounter.CellCntrImageCanvas
        • ini.trakem2.display.DisplayCanvas (implements java.awt.event.KeyListener, java.awt.event.MouseWheelListener)
        • sc.fiji.timelapse.DummyCanvas
        • sc.fiji.i5d.gui.Image5DCanvas
          • sc.fiji.i5d.gui.TileCanvas
        • sc.fiji.snt.hyperpanes.MultiDThreePanesCanvas
          • sc.fiji.snt.TracerCanvas
        • fiji.util.gui.OverlayedImageCanvas
        • bunwarpj.PointAction (implements java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
        • landmarks.ProgressCanvas
        • vib.SegmentationViewerCanvas
          • vib.segment.CustomCanvas
        • features.SigmaPalette.PaletteCanvas
        • stacks.ThreePanesCanvas
          • stacks.ThreePaneCropCanvas
      • view5d.ImageCanvas (implements java.awt.event.AdjustmentListener, java.awt.event.FocusListener, java.awt.image.ImageObserver, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
      • spim.fiji.plugin.util.MyMultiLineLabel
      • bunwarpj.PointToolbar (implements java.awt.event.MouseListener)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
          • javax.swing.JButton (implements javax.accessibility.Accessible)
            • sc.fiji.snt.gui.ColorChooserButton
            • org.imagearchive.lsm.toolbox.gui.GUIButton
          • javax.swing.JMenuItem (implements javax.accessibility.Accessible, javax.swing.MenuElement)
            • spim.fiji.spimdata.explorer.popup.ApplyTransformationPopup (implements spim.fiji.spimdata.explorer.popup.ViewExplorerSetable)
            • spim.fiji.spimdata.explorer.popup.BakeManualTransformationPopup (implements spim.fiji.spimdata.explorer.popup.ViewExplorerSetable)
            • spim.fiji.spimdata.explorer.popup.BDVPopup (implements spim.fiji.spimdata.explorer.popup.ViewExplorerSetable)
            • spim.fiji.spimdata.explorer.popup.BoundingBoxPopup (implements spim.fiji.spimdata.explorer.popup.ViewExplorerSetable)
            • spim.fiji.spimdata.explorer.popup.DetectInterestPointsPopup (implements spim.fiji.spimdata.explorer.popup.ViewExplorerSetable)
            • spim.fiji.spimdata.explorer.popup.FusionPopup (implements spim.fiji.spimdata.explorer.popup.ViewExplorerSetable)
            • org.imagearchive.lsm.toolbox.gui.GUIMenuItem
            • spim.fiji.spimdata.explorer.popup.InterestPointsExplorerPopup (implements spim.fiji.spimdata.explorer.popup.ViewExplorerSetable)
            • javax.swing.JMenu (implements javax.accessibility.Accessible, javax.swing.MenuElement)
              • sc.fiji.snt.gui.ColorMenu
              • spim.fiji.spimdata.explorer.popup.DisplayViewPopup (implements spim.fiji.spimdata.explorer.popup.ViewExplorerSetable)
              • spim.fiji.spimdata.explorer.popup.RemoveDetectionsPopup (implements spim.fiji.spimdata.explorer.popup.ViewExplorerSetable)
              • spim.fiji.spimdata.explorer.popup.RemoveTransformationPopup (implements spim.fiji.spimdata.explorer.popup.ViewExplorerSetable)
              • spim.fiji.spimdata.explorer.popup.ResavePopup (implements spim.fiji.spimdata.explorer.popup.ViewExplorerSetable)
            • spim.fiji.spimdata.explorer.popup.MaxProjectPopup (implements spim.fiji.spimdata.explorer.popup.ViewExplorerSetable)
            • spim.fiji.spimdata.explorer.popup.RegisterInterestPointsPopup (implements spim.fiji.spimdata.explorer.popup.ViewExplorerSetable)
            • spim.fiji.spimdata.explorer.popup.RegistrationExplorerPopup (implements spim.fiji.spimdata.explorer.popup.ViewExplorerSetable)
            • spim.fiji.spimdata.explorer.popup.ReorientSamplePopup (implements spim.fiji.spimdata.explorer.popup.ViewExplorerSetable)
            • spim.fiji.spimdata.explorer.popup.SpecifyCalibrationPopup (implements spim.fiji.spimdata.explorer.popup.ViewExplorerSetable)
            • spim.fiji.spimdata.explorer.popup.VisualizeDetectionsPopup (implements spim.fiji.spimdata.explorer.popup.ViewExplorerSetable)
        • org.siox.example.ImagePane
        • bdv.viewer.InteractiveDisplayCanvas
        • javax.swing.JComboBox<E> (implements javax.accessibility.Accessible, java.awt.event.ActionListener, java.awt.ItemSelectable, javax.swing.event.ListDataListener)
          • fiji.plugin.trackmate.gui.components.CategoryJComboBox<K,V>
        • fiji.util.gui.JImagePanel (implements java.lang.Cloneable)
        • javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • javax.swing.DefaultListCellRenderer (implements javax.swing.ListCellRenderer<E>, java.io.Serializable)
            • bdv.ij.BigDataBrowserPlugIn.ThumbnailListRenderer
          • javax.swing.table.DefaultTableCellRenderer (implements java.io.Serializable, javax.swing.table.TableCellRenderer)
            • bigwarp.BigWarp.WarningTableCellRenderer
            • spim.fiji.spimdata.explorer.interestpoint.InterestPointExplorerPanel.MyRenderer
          • javax.swing.tree.DefaultTreeCellRenderer (implements javax.swing.tree.TreeCellRenderer)
            • ini.trakem2.tree.DNDTree.NodeRenderer
              • ini.trakem2.tree.LayerTree.LayerThingNodeRender
              • ini.trakem2.tree.ProjectTree.ProjectThingNodeRenderer
          • fiji.plugin.trackmate.util.JLabelLogger
          • spim.fiji.spimdata.explorer.popup.LabelPopUp (implements spim.fiji.spimdata.explorer.popup.ViewExplorerSetable)
        • javax.swing.JMenuBar (implements javax.accessibility.Accessible, javax.swing.MenuElement)
          • Color_Inspector_3D.Menu
          • ij3d.Image3DMenubar (implements java.awt.event.ActionListener, java.awt.event.ItemListener, ij3d.UniverseListener)
          • ij3d.RegistrationMenubar (implements java.awt.event.ActionListener, ij3d.UniverseListener)
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • bdv.tools.boundingbox.AbstractTransformedBoxSelectionDialog.OkCancelPanel
          • bdv.tools.boundingbox.AbstractTransformedBoxSelectionDialog.TimepointSelectionPanel
          • bdv.gui.BigWarpLandmarkPanel
          • bdv.gui.BigwarpLandmarkSelectionPanel<T>
          • bdv.tools.boundingbox.BoxDisplayModePanel
          • bdv.tools.boundingbox.BoxSelectionPanel
          • bdv.tools.brightness.BrightnessDialog.ColorsPanel
          • bdv.tools.brightness.BrightnessDialog.MinMaxPanel (implements bdv.tools.brightness.MinMaxGroup.UpdateListener)
          • bdv.tools.brightness.BrightnessDialog.MinMaxPanels
          • fiji.plugin.trackmate.action.CaptureOverlayPanel
          • ini.trakem2.display.Channel (implements java.awt.event.ItemListener, java.awt.event.MouseListener)
          • org.jfree.chart.ChartPanel (implements java.awt.event.ActionListener, org.jfree.chart.event.ChartChangeListener, org.jfree.chart.event.ChartProgressListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, org.jfree.chart.event.OverlayChangeListener, java.awt.print.Printable, java.io.Serializable)
            • fiji.plugin.trackmate.util.ExportableChartPanel
          • fiji.plugin.trackmate.gui.components.ConfigurationPanel
            • fiji.plugin.trackmate.gui.components.tracker.KalmanTrackerConfigPanel
            • fiji.plugin.trackmate.gui.components.tracker.LAPTrackerSettingsPanel
            • fiji.plugin.trackmate.gui.components.detector.LogDetectorConfigurationPanel
              • fiji.plugin.trackmate.gui.components.detector.DogDetectorConfigurationPanel
            • fiji.plugin.trackmate.gui.components.detector.ManualDetectorConfigurationPanel
            • fiji.plugin.trackmate.gui.components.tracker.NearestNeighborTrackerSettingsPanel
            • fiji.plugin.trackmate.tracking.overlap.OverlapTrackerSettingsPanel
            • fiji.plugin.trackmate.gui.components.tracker.SimpleLAPTrackerSettingsPanel
            • fiji.plugin.trackmate.gui.components.detector.ThresholdDetectorConfigurationPanel
              • fiji.plugin.trackmate.gui.components.detector.LabelImageDetectorConfigurationPanel
              • fiji.plugin.trackmate.gui.components.detector.MaskDetectorConfigurationPanel
          • fiji.plugin.trackmate.gui.components.ConfigureViewsPanel
          • org.siox.example.ControlJPanel
          • siox.ControlJPanel
          • bdv.ui.convertersetupeditor.ConverterSetupEditPanel
          • ini.trakem2.display.DisplayablePanel (implements java.awt.event.MouseListener)
          • ini.trakem2.display.DisplayNavigator (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
          • fiji.plugin.trackmate.gui.displaysettings.DisplaySettingsPanel
          • bdv.ui.viewermodepanel.DisplaySettingsPanel
          • fiji.plugin.trackmate.gui.components.FeaturePlotSelectionPanel
          • fiji.plugin.trackmate.gui.components.FilterGuiPanel (implements javax.swing.event.ChangeListener)
          • fiji.plugin.trackmate.gui.components.FilterPanel
          • fiji.plugin.volumeviewer.Gradient (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
          • sc.fiji.snt.viewer.geditor.GraphEditor
          • fiji.plugin.trackmate.gui.components.GrapherPanel
          • fiji.plugin.volumeviewer.Gui (implements java.awt.event.ActionListener, javax.swing.event.ChangeListener, java.awt.event.ItemListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
          • org.imagearchive.lsm.toolbox.gui.ImagePreview (implements java.beans.PropertyChangeListener)
          • fiji.plugin.trackmate.visualization.trackscheme.InfoPane (implements fiji.plugin.trackmate.SelectionChangeListener)
          • fiji.plugin.trackmate.gui.components.InitFilterPanel
          • spim.fiji.spimdata.explorer.interestpoint.InterestPointExplorerPanel
          • fiji.plugin.trackmate.gui.components.tracker.JPanelFeaturePenalty
          • fiji.plugin.trackmate.gui.components.tracker.JPanelFeatureSelectionGui
          • fiji.plugin.trackmate.gui.components.tracker.JPanelTrackerSettingsMain
          • fiji.plugin.trackmate.action.LabelImgExporterPanel
          • ini.trakem2.display.LayerPanel (implements java.awt.event.MouseListener)
          • fiji.plugin.trackmate.gui.components.LogPanel
          • fiji.plugin.trackmate.gui.components.ModuleChooserPanel<K>
            • fiji.plugin.trackmate.gui.components.ActionChooserPanel
          • ini.trakem2.utils.OptionPanel
          • bdv.tools.boundingbox.RealBoxSelectionPanel
          • spim.fiji.spimdata.explorer.registration.RegistrationExplorerPanel
          • ini.trakem2.display.RollingPanel (implements java.awt.event.AdjustmentListener, java.awt.event.ComponentListener, java.awt.event.MouseWheelListener)
          • loci.plugins.shortcut.ShortcutPanel (implements java.awt.event.ActionListener, ij.plugin.PlugIn)
          • fiji.plugin.trackmate.gui.displaysettings.SliderPanel (implements fiji.plugin.trackmate.gui.displaysettings.BoundedValue.UpdateListener)
          • bdv.tools.brightness.SliderPanel (implements bdv.util.BoundedValue.UpdateListener)
          • fiji.plugin.trackmate.gui.displaysettings.SliderPanelDouble (implements fiji.plugin.trackmate.gui.displaysettings.BoundedValueDouble.UpdateListener)
          • bdv.tools.brightness.SliderPanelDouble (implements bdv.util.BoundedValueDouble.UpdateListener)
          • fiji.plugin.trackmate.visualization.trackscheme.SmallFeaturePlotSelectionPanel
          • ini.trakem2.display.SnapshotPanel (implements java.awt.event.MouseListener)
          • fiji.plugin.volumeviewer.TFalpha1 (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
          • fiji.plugin.volumeviewer.TFalpha2 (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
          • fiji.plugin.volumeviewer.TFalpha3 (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
          • fiji.plugin.volumeviewer.TFalpha4 (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
          • fiji.plugin.volumeviewer.TFrgb (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
          • sc.fiji.snt.viewer.Viewer3D.ManagerPanel
          • bdv.viewer.ViewerPanel (implements bdv.viewer.OverlayRenderer, bdv.viewer.render.PainterThread.Paintable, bdv.viewer.RequestRepaint, bdv.viewer.ViewerStateChangeListener)
            • bdv.viewer.BigWarpViewerPanel
          • spim.fiji.spimdata.explorer.ViewSetupExplorerPanel<AS,X>
          • bdv.tools.VisibilityAndGroupingDialog.GroupingPanel (implements bdv.viewer.ViewerStateChangeListener)
          • bdv.tools.VisibilityAndGroupingDialog.ModePanel (implements bdv.viewer.ViewerStateChangeListener)
          • bdv.tools.VisibilityAndGroupingDialog.VisibilityPanel (implements bdv.viewer.ViewerStateChangeListener)
          • fiji.plugin.trackmate.gui.wizard.WizardPanel
        • javax.swing.JPopupMenu (implements javax.accessibility.Accessible, javax.swing.MenuElement)
          • bdv.viewer.LandmarkPointMenu
          • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemePopupMenu
        • org.siox.example.JRuler (implements javax.swing.Icon, javax.swing.SwingConstants)
        • javax.swing.JScrollPane (implements javax.accessibility.Accessible, javax.swing.ScrollPaneConstants)
          • com.mxgraph.swing.mxGraphComponent (implements java.awt.print.Printable)
            • sc.fiji.snt.viewer.geditor.SNTGraphComponent
              • sc.fiji.snt.viewer.geditor.AnnotationGraphComponent
              • sc.fiji.snt.viewer.geditor.SNTPseudographComponent
              • sc.fiji.snt.viewer.geditor.TreeGraphComponent
            • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeGraphComponent (implements com.mxgraph.util.mxEventSource.mxIEventListener)
          • org.siox.example.ScrollDisplay
        • javax.swing.JSeparator (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • spim.fiji.spimdata.explorer.popup.Separator (implements spim.fiji.spimdata.explorer.popup.ViewExplorerSetable)
        • javax.swing.JSlider (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • bdv.ui.rangeslider.RangeSlider
        • javax.swing.JSplitPane (implements javax.accessibility.Accessible)
          • bdv.ui.splitpanel.SplitPanel
        • javax.swing.JTable (implements javax.accessibility.Accessible, javax.swing.event.CellEditorListener, javax.swing.event.ListSelectionListener, javax.swing.event.RowSorterListener, javax.swing.Scrollable, javax.swing.event.TableColumnModelListener, javax.swing.event.TableModelListener)
          • bdv.gui.BigWarpLandmarkPanel.JTableChecking
          • ij3d.shortcuts.ShortCutTable
          • bdv.ui.sourcetable.SourceTable
        • javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • javax.swing.JTextField (implements javax.swing.SwingConstants)
            • bdv.gui.BigWarpLandmarkPanel.TextFieldCell
            • sc.fiji.snt.gui.GuiUtils.JTextFieldFile
            • ini.trakem2.utils.IntegerField
            • fiji.plugin.trackmate.visualization.trackscheme.utils.SearchBar
        • javax.swing.JToolBar (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • com.jidesoft.swing.SearchableBar (implements com.jidesoft.swing.SearchableProvider)
            • sc.fiji.snt.gui.SNTSearchableBar
              • sc.fiji.snt.gui.PathManagerUISearchableBar
          • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeToolbar
        • javax.swing.JTree (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • ini.trakem2.tree.DNDTree (implements java.awt.event.KeyListener, javax.swing.event.TreeExpansionListener)
            • ini.trakem2.tree.LayerTree (implements java.awt.event.ActionListener, java.awt.event.MouseListener)
            • ini.trakem2.tree.ProjectTree (implements java.awt.event.ActionListener, java.awt.event.MouseListener)
            • ini.trakem2.tree.TemplateTree (implements java.awt.event.ActionListener, java.awt.event.MouseListener)
          • bdv.ui.sourcegrouptree.SourceGroupTree
      • java.awt.Panel (implements javax.accessibility.Accessible)
        • java.applet.Applet
          • javax.swing.JApplet (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer)
            • org.siox.example.Main
          • view5d.View5D
        • BorderPanel
        • sc.fiji.i5d.gui.ChannelControl (implements java.awt.event.ActionListener, java.awt.event.AdjustmentListener, java.awt.event.ItemListener)
        • sc.fiji.i5d.gui.ChannelControl.ChannelColorChooser (implements java.awt.event.ActionListener, java.awt.event.ItemListener)
        • sc.fiji.i5d.gui.ChannelControl.ChannelSelectorOverlay (implements java.awt.event.ActionListener, java.awt.event.ItemListener)
        • spimopener.DoubleSlider (implements java.awt.event.FocusListener, java.awt.event.TextListener)
        • vib.app.gui.FileGroupDialog (implements java.awt.event.ActionListener, java.awt.dnd.DropTargetListener)
        • view5d.ImgPanel
        • vib.segment.InfoPanel
        • IntSlider (implements java.awt.event.ActionListener, java.awt.event.AdjustmentListener)
        • edu.utexas.clm.archipelago.ui.NodeConfigurationUI (implements java.awt.event.ActionListener)
        • view5d.PixelDisplay (implements java.awt.image.ImageObserver, java.awt.event.KeyListener, java.awt.event.MouseListener)
        • ij3d.pointlist.PointListPanel (implements java.awt.event.ActionListener, vib.PointList.PointListListener)
        • view5d.PositionLabel (implements java.awt.event.KeyListener, java.awt.event.MouseListener)
        • sc.fiji.i5d.gui.ScrollbarWithLabel (implements java.awt.Adjustable, java.awt.event.AdjustmentListener)
        • Series_Labeler.FontPropertiesPanel
        • vib.segment.Sidebar (implements vib.segment.CustomCanvas.CanvasListener, java.awt.event.ItemListener)
        • volumeCalculator.VolumesPanel
      • java.awt.ScrollPane (implements javax.accessibility.Accessible)
        • vib.segment.MaterialList (implements java.awt.event.ActionListener, java.awt.event.ItemListener)
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • bunwarpj.ClearAll (implements java.awt.event.ActionListener)
          • ij.gui.GenericDialog (implements java.awt.event.ActionListener, java.awt.event.AdjustmentListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.event.TextListener, java.awt.event.WindowListener)
            • fiji.util.gui.GenericDialogPlus
              • sc.fiji.snt.gui.EnhancedGenericDialog
              • spimopener.OpenerGenericDialog
            • ij3d.gui.InteractiveTransformDialog
            • ij3d.gui.LUTDialog
            • bunwarpj.MainDialog
            • ij.gui.NonBlockingGenericDialog
              • org.janelia.thickness.plugin.NonBlockingGenericDialogWithFileField
          • util.Histogram_2D.HistogramOptionsDialog
          • bunwarpj.IODialog (implements java.awt.event.ActionListener)
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • org.imagearchive.lsm.toolbox.gui.AboutDialog
            • bdv.tools.boundingbox.AbstractTransformedBoxSelectionDialog<R>
              • bdv.tools.boundingbox.TransformedBoxSelectionDialog
              • bdv.tools.boundingbox.TransformedRealBoxSelectionDialog
            • org.imagearchive.lsm.toolbox.gui.BatchDialog
            • bdv.tools.boundingbox.BoundingBoxDialog
            • bdv.tools.crop.CropDialog
            • bdv.util.DelayedPackDialog
              • bdv.tools.brightness.BrightnessDialog
              • bdv.tools.HelpDialog
              • bdv.tools.RecordMaxProjectionDialog (implements bdv.viewer.OverlayRenderer)
              • bdv.tools.RecordMovieDialog (implements bdv.viewer.OverlayRenderer)
              • bdv.tools.VisibilityAndGroupingDialog
            • sc.fiji.snt.FillManagerUI (implements java.awt.event.ActionListener, sc.fiji.snt.FillerProgressCallback)
            • bigwarp.HelpDialog
            • org.imagearchive.lsm.toolbox.gui.NotesDialog
            • sc.fiji.snt.PathManagerUI (implements javax.swing.event.TreeSelectionListener)
            • org.imagearchive.lsm.toolbox.gui.SelectImageDialog
            • sc.fiji.snt.gui.ShollAnalysisDialog (implements java.awt.event.ActionListener)
            • ij3d.shortcuts.ShortCutDialog
            • sc.fiji.snt.SNTUI
            • bigwarp.SourceInfoDialog
            • sc.fiji.snt.gui.SWCImportOptionsDialog (implements java.awt.event.ActionListener, java.awt.event.ItemListener)
            • bdv.gui.TransformTypeSelectDialog
            • bigwarp.WarpVisFrame
          • util.ModelessQuestions (implements java.awt.event.ActionListener)
          • ij3d.pointlist.PointListDialog
          • vib.Points_Dialog (implements java.awt.event.ActionListener, ij.plugin.PlugIn, vib.PointList.PointListListener)
          • ij.gui.WaitForUserDialog (implements java.awt.event.ActionListener, java.awt.event.KeyListener)
            • sc.fiji.snt.gui.EnhancedWaitForUserDialog
          • ini.trakem2.display.YesNoDialog (implements java.awt.event.ActionListener, java.awt.event.KeyListener)
        • java.awt.Frame (implements java.awt.MenuContainer)
          • view5d.AlternateViewer (implements java.awt.event.WindowListener)
          • sc.fiji.hdf5.HDF5_Writer_Vibez (implements java.awt.event.ActionListener, ij.plugin.filter.PlugInFilter)
          • ij.gui.ImageWindow (implements java.awt.event.FocusListener, java.awt.event.MouseWheelListener, java.awt.event.WindowListener, java.awt.event.WindowStateListener)
            • ini.trakem2.display.FakeImageWindow
            • siox.SegmentationGUI (implements java.awt.event.ActionListener)
            • vib.ShowHistogram (implements java.awt.event.ActionListener, java.awt.datatransfer.ClipboardOwner, ij.measure.Measurements)
            • ij.gui.StackWindow (implements java.awt.event.ActionListener, java.awt.event.AdjustmentListener, java.awt.event.MouseWheelListener, java.lang.Runnable)
              • vib.segment.CustomStackWindow (implements java.awt.event.ActionListener, java.awt.event.AdjustmentListener, java.awt.event.KeyListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener)
              • loci.plugins.util.DataBrowser
              • sc.fiji.i5d.gui.Image5DWindow (implements java.awt.event.KeyListener)
                • OpenImage5DWindow
              • OpenStackWindow
              • landmarks.ProgressWindow (implements java.awt.event.ActionListener)
              • features.SigmaPalette.PaletteStackWindow
              • stacks.ThreePaneContainer (implements java.awt.event.ActionListener, stacks.PaneOwner)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • fiji.plugin.trackmate.visualization.table.AllSpotsTableView (implements fiji.plugin.trackmate.ModelChangeListener, fiji.plugin.trackmate.SelectionChangeListener, fiji.plugin.trackmate.visualization.TrackMateModelView)
            • org.jfree.chart.ui.ApplicationFrame (implements java.awt.event.WindowListener)
              • spim.fiji.plugin.thinout.Histogram
            • fiji.util.ArrowOptionPanel
            • sc.fiji.balloonSegmentation.BalloonSegmentation_ (implements java.awt.event.ActionListener, java.awt.event.AdjustmentListener, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseWheelListener, ij.plugin.PlugIn, java.awt.event.WindowListener)
            • script.imglib.analysis.BarChart
            • bdv.viewer.BigWarpLandmarkFrame
            • bdv.gui.BigWarpViewerFrame
            • fiji.plugin.trackmate.visualization.table.BranchTableView (implements fiji.plugin.trackmate.visualization.TrackMateModelView)
            • loci.plugins.util.BrowserOptionsWindow
            • sc.fiji.cellCounter.CellCounter (implements java.awt.event.ActionListener, java.awt.event.ItemListener)
            • org.jfree.chart.ChartFrame
              • sc.fiji.snt.analysis.SNTChart
            • fiji.util.gui.CommandFinderBase (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.WindowListener)
              • fiji.util.gui.JFrameCommandFinder
            • loci.plugins.config.ConfigWindow (implements java.awt.event.ActionListener, java.awt.event.ItemListener, javax.swing.event.ListSelectionListener, java.lang.Runnable)
            • org.imagearchive.lsm.toolbox.gui.ControlPanelFrame
            • org.imagearchive.lsm.toolbox.gui.DetailsFrame
            • fiji.plugin.trackmate.util.ExportableChartValueTable
            • fiji.plugin.timelapsedisplay.GraphFrame (implements java.awt.event.ActionListener)
            • spim.process.interestpointregistration.registrationstatistics.GraphFrame (implements java.awt.event.ActionListener)
            • sc.fiji.hdf5.HDF5_Reader_Vibez (implements java.awt.event.ActionListener, ij.plugin.PlugIn)
            • fiji.process.IepGui<T> (implements ij.ImageListener, java.awt.event.WindowListener)
            • ij3d.ImageWindow3D (implements ij3d.UniverseListener)
            • org.imagearchive.lsm.toolbox.gui.InfoFrame
            • loci.plugins.config.InstallWizard
            • sc.fiji.omevisual.gui.MainAppFrame
            • net.imagej.ui.swing.ops.OpFinder (implements java.awt.event.ActionListener, javax.swing.event.DocumentListener)
            • oldsegmenters.Segmentator_ (implements ij.plugin.PlugIn)
            • oldsegmenters.Segmenter_ (implements ij.plugin.PlugIn)
            • sc.fiji.coloc.results.SingleWindowDisplay<T> (implements java.awt.event.ActionListener, java.awt.datatransfer.ClipboardOwner, java.awt.event.ItemListener, java.awt.event.MouseMotionListener, sc.fiji.coloc.results.ResultHandler<T>)
            • fiji.plugin.trackmate.visualization.hyperstack.SpotEditToolConfigPanel
            • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeFrame
            • fiji.plugin.trackmate.visualization.table.TrackTableView (implements fiji.plugin.trackmate.ModelChangeListener, fiji.plugin.trackmate.SelectionChangeListener, fiji.plugin.trackmate.visualization.TrackMateModelView)
            • bdv.viewer.ViewerFrame
          • ij.plugin.frame.PlugInFrame (implements java.awt.event.FocusListener, ij.plugin.PlugIn, java.awt.event.WindowListener)
            • sc.fiji.cellCounter.Cell_Counter
            • Manual_Tracking (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.MouseListener)
            • Sync_Windows (implements java.awt.event.ActionListener, DisplayChangeListener, ij.ImageListener, java.awt.event.ItemListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
              • Sync_Measure_3D
            • view5d.View5D_ (implements ij.plugin.PlugIn, java.awt.event.WindowListener)
          • ij.text.TextWindow (implements java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener)
            • amira.AmiraTable
            • loci.plugins.util.SearchableWindow
    • java.awt.TextComponent (implements javax.accessibility.Accessible)
      • java.awt.TextArea
        • view5d.ImageErr
      • java.awt.TextField
        • IntField (implements java.awt.event.FocusListener)
        • TextFieldFocus (implements java.awt.event.FocusListener)
  • mpicbg.spim.registration.threshold.ComponentProperties
  • fiji.stacks.CompositeConverter2
  • stitching.utils.CompositeImageFixer
  • script.imglib.math.Compute
  • Compute_Curvatures (implements ij.plugin.PlugIn)
  • Compute_Topography (implements ij.plugin.filter.PlugInFilter)
  • features.ComputeCurvatures (implements java.lang.Runnable)
  • features.ComputeCurvatures.FloatArray
    • features.ComputeCurvatures.FloatArray2D
    • features.ComputeCurvatures.FloatArray3D
  • mpicbg.imglib.algorithm.math.ComputeMinMax<T> (implements mpicbg.imglib.algorithm.Algorithm, mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.MultiThreaded)
  • loci.plugins.in.Concatenator
  • fiji.plugin.trackmate.gui.displaysettings.ConfigTrackMateDisplaySettings (implements org.scijava.command.Command)
  • mpicbg.spim.io.ConfigurationParserGeneral
  • mpicbg.spim.io.ConfigurationParserObject
  • mpicbg.spim.io.ConfigurationParserSPIM
  • mpicbg.spim.registration.threshold.ConnectedComponent
  • adt.Connectivity2D
  • vib.app.gui.Console
  • imglib.ops.operator.unary.Constant (implements imglib.ops.operator.UnaryOperator)
  • bdv.util.ConstantRandomAccessible<T> (implements net.imglib2.RandomAccessible<T>)
  • customnode.u3d.Constants
  • imglib.ops.function.pn.ConstFunction<T> (implements imglib.ops.function.RealFunction<T>)
  • mpicbg.imglib.container.ContainerFactory (implements mpicbg.imglib.Factory)
    • mpicbg.imglib.container.constant.ConstantContainerFactory
    • mpicbg.imglib.container.PixelGridContainerFactory
      • mpicbg.imglib.container.DirectAccessContainerFactory
        • mpicbg.imglib.container.array.ArrayContainerFactory
        • mpicbg.imglib.container.cell.CellContainerFactory
          • mpicbg.imglib.wrapper.PredefinedCellContainerFactory
        • mpicbg.imglib.container.dynamic.DynamicContainerFactory
        • mpicbg.imglib.container.planar.PlanarContainerFactory
          • mpicbg.imglib.container.imageplus.ImagePlusContainerFactory
    • mpicbg.imglib.container.shapelist.ShapeListContainerFactory
  • mpicbg.imglib.container.ContainerImpl<T> (implements mpicbg.imglib.container.Container<T>)
    • mpicbg.imglib.container.constant.ConstantContainer<T>
    • mpicbg.imglib.container.PixelGridContainerImpl<T> (implements mpicbg.imglib.container.PixelGridContainer<T>)
      • mpicbg.imglib.container.DirectAccessContainerImpl<T,A> (implements mpicbg.imglib.container.DirectAccessContainer<T,A>)
        • mpicbg.imglib.container.array.Array<T,A>
          • mpicbg.imglib.container.array.Array3D<T,A> (implements mpicbg.imglib.container.Container3D<T>)
        • mpicbg.imglib.container.cell.CellContainer<T,A>
        • mpicbg.imglib.container.dynamic.DynamicContainer<T,A>
          • mpicbg.imglib.container.dynamic.BitDynamicContainer<T>
          • mpicbg.imglib.container.dynamic.ByteDynamicContainer<T>
          • mpicbg.imglib.container.dynamic.CharDynamicContainer<T>
          • mpicbg.imglib.container.dynamic.DoubleDynamicContainer<T>
          • mpicbg.imglib.container.dynamic.FloatDynamicContainer<T>
          • mpicbg.imglib.container.dynamic.IntDynamicContainer<T>
          • mpicbg.imglib.container.dynamic.LongDynamicContainer<T>
          • mpicbg.imglib.container.dynamic.ShortDynamicContainer<T>
        • mpicbg.imglib.container.planar.PlanarContainer<T,A> (implements mpicbg.imglib.container.basictypecontainer.PlanarAccess<A>)
          • mpicbg.imglib.container.imageplus.ImagePlusContainer<T,A>
            • mpicbg.imglib.container.imageplus.ByteImagePlus<T>
            • mpicbg.imglib.container.imageplus.FloatImagePlus<T>
            • mpicbg.imglib.container.imageplus.IntImagePlus<T>
            • mpicbg.imglib.container.imageplus.ShortImagePlus<T>
    • mpicbg.imglib.container.shapelist.ShapeList<T>
      • mpicbg.imglib.container.shapelist.ShapeListCached<T>
  • spim.process.fusion.weights.ContentBased<T> (implements net.imglib2.RealRandomAccessible<T>)
  • ij3d.ContentCreator
  • ij3d.gui.ContentCreatorDialog
  • ij3d.behaviors.ContentTransformer
  • ch.qos.logback.core.spi.ContextAwareBase (implements ch.qos.logback.core.spi.ContextAware)
    • ch.qos.logback.core.AppenderBase<E> (implements ch.qos.logback.core.Appender<E>)
      • loci.plugins.util.IJStatusEchoer
  • customnode.u3d.ContextManager
  • ij3d.contextmenu.ContextMenu (implements java.awt.event.ActionListener, ij3d.ContentConstants, java.awt.event.ItemListener)
  • ini.trakem2.imaging.ContrastEnhancerWrapper
  • fiji.plugin.volumeviewer.Control
  • ini.trakem2.ControlWindow
  • fiji.color.Convert_Red_To_Magenta (implements ij.plugin.filter.PlugInFilter)
  • fiji.color.Convert_Red_To_Magenta_Clipboard (implements ij.plugin.PlugIn)
  • bdv.viewer.ConverterSetupBounds
  • bdv.viewer.ConverterSetups (implements bdv.viewer.SourceToConverterSetupBimap)
  • fiji.plugin.trackmate.graph.ConvexBranchesDecomposition (implements net.imglib2.algorithm.Algorithm, net.imglib2.algorithm.Benchmark)
  • fiji.plugin.trackmate.graph.ConvexBranchesDecomposition.TrackBranchDecomposition
  • fiji.plugin.trackmate.features.spot.ConvexHull
  • levelsets.filter.ConvolutionFilter (implements levelsets.filter.Filter)
  • process3d.Convolve3d
    • process3d.Convolve_3d (implements ij.plugin.filter.PlugInFilter)
  • levelsets.algorithm.Coordinate
    • levelsets.algorithm.BandElement (implements java.lang.Comparable<T>)
      • levelsets.algorithm.FastMarchingBandElement
  • ini.trakem2.display.Coordinate<T>
  • mpicbg.models.CoordinateTransformList<E> (implements mpicbg.models.Boundable, mpicbg.models.TransformList<E>)
    • mpicbg.trakem2.transform.CoordinateTransformList<E> (implements mpicbg.trakem2.transform.CoordinateTransform)
  • mpicbg.models.CoordinateTransformMap2D (implements mpicbg.models.CoordinateTransform)
    • mpicbg.models.TransformMeshMap2D
  • ini.trakem2.io.CoordinateTransformXML
  • mpicbg.spim.registration.detection.descriptor.CoordSystem3d<T> (implements mpicbg.spim.registration.detection.descriptor.CorrespondenceExtraction<T>)
    • mpicbg.spim.registration.detection.descriptor.CoordSystemSecure3d<T>
  • imglib.ops.operator.binary.Copy (implements imglib.ops.operator.BinaryOperator)
  • imglib.ops.operator.unary.Copy (implements imglib.ops.operator.UnaryOperator)
  • imglib.ops.operator.binary.CopyTransparentZero (implements imglib.ops.operator.BinaryOperator)
  • QuickPALM.Correct_Drift (implements ij.plugin.PlugIn)
  • QuickPALM.Correct_Drift2 (implements ij.plugin.PlugIn)
  • ini.trakem2.imaging.filters.CorrectBackground (implements ini.trakem2.imaging.filters.IFilter)
  • distance.Correlation (implements distance.PixelPairs)
  • org.janelia.thickness.inference.visitor.CorrelationFitVisitor.ArrayIterable (implements java.lang.Iterable<T>)
  • spim.fiji.spimdata.interestpoints.CorrespondingInterestPoints (implements java.lang.Comparable<T>)
  • spimopener.Count_Files (implements ij.plugin.PlugIn)
  • util.Count_Labels (implements ij.plugin.PlugIn)
  • Utilities.Counter3D
  • fiji.util.CoverMakerUtils
  • org.imagearchive.lsm.toolbox.gui.CPDragAndDrop (implements java.awt.dnd.DropTargetListener)
  • CPU_Meter (implements ij.plugin.PlugIn)
  • QuickPALM.Create_3D_calibration (implements ij.plugin.PlugIn)
  • bdv.img.cache.CreateInvalidVolatileCell<A> (implements net.imglib2.cache.volatiles.CreateInvalid<K,V>)
  • bunwarpj.Credits (implements ij.plugin.PlugIn)
  • CropEditor_ (implements ij.plugin.filter.PlugInFilter)
  • bdv.tools.crop.CropImgLoader (implements mpicbg.spim.data.generic.sequence.BasicImgLoader)
  • bdv.tools.crop.CropImgLoader.SetupImgLoader<T> (implements mpicbg.spim.data.generic.sequence.BasicSetupImgLoader<T>)
  • mpicbg.imglib.algorithm.correlation.CrossCorrelation<S,T> (implements mpicbg.imglib.algorithm.Algorithm, mpicbg.imglib.algorithm.MultiThreaded)
  • mpi.fruitfly.registration.CrossCorrelation2D
  • stitching.CrossCorrelationResult2D (implements stitching.Quicksortable)
  • stitching.CrossCorrelationResult3D (implements stitching.Quicksortable)
  • util.opencsv.CSVReader
  • org.janelia.thickness.inference.visitor.CSVVisitor.IndexedIterable<T> (implements java.lang.Iterable<T>)
  • org.janelia.thickness.inference.visitor.CSVVisitor.IndexedIterable.IndexedIterator (implements java.util.Iterator<E>)
  • util.opencsv.CSVWriter
  • octree.Cube (implements ij3d.AxisConstants, java.lang.Comparable<T>)
  • octree.CubeData (implements ij3d.AxisConstants)
  • spim.process.cuda.CUDADevice (implements java.lang.Comparable<T>)
  • spim.process.cuda.CUDASeparableConvolutionFunctions
  • mpicbg.spim.postprocessing.deconvolution2.CUDATools
  • spim.process.cuda.CUDATools
  • fiji.util.CurrentSlice (implements java.awt.event.AdjustmentListener, ij.ImageListener, java.awt.event.WindowListener)
  • trainableSegmentation.utils.Cursor2D
  • org.siox.example.CursorFactory
  • mpicbg.imglib.cursor.CursorImpl<T> (implements mpicbg.imglib.cursor.Cursor<T>)
    • mpicbg.imglib.cursor.array.ArrayCursor<T> (implements mpicbg.imglib.cursor.Cursor<T>)
      • mpicbg.imglib.cursor.array.ArrayLocalizableCursor<T> (implements mpicbg.imglib.cursor.LocalizableCursor<T>)
        • mpicbg.imglib.cursor.array.Array3DLocalizableCursor<T> (implements mpicbg.imglib.cursor.LocalizableCursor3D<T>)
        • mpicbg.imglib.cursor.array.ArrayLocalizableByDimCursor<T> (implements mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
          • mpicbg.imglib.cursor.array.Array3DLocalizableByDimCursor<T> (implements mpicbg.imglib.cursor.LocalizableByDimCursor3D<T>)
          • mpicbg.imglib.cursor.array.ArrayLocalizableByDimOutOfBoundsCursor<T> (implements mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
            • mpicbg.imglib.cursor.array.Array3DLocalizableByDimOutOfBoundsCursor<T> (implements mpicbg.imglib.cursor.LocalizableByDimCursor3D<T>)
        • mpicbg.imglib.cursor.array.ArrayLocalizablePlaneCursor<T> (implements mpicbg.imglib.cursor.LocalizablePlaneCursor<T>)
    • mpicbg.imglib.cursor.cell.CellCursor<T> (implements mpicbg.imglib.cursor.Cursor<T>)
      • mpicbg.imglib.cursor.cell.CellLocalizableCursor<T> (implements mpicbg.imglib.cursor.LocalizableCursor<T>)
        • mpicbg.imglib.cursor.cell.CellLocalizableByDimCursor<T> (implements mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
          • mpicbg.imglib.cursor.cell.CellLocalizableByDimOutOfBoundsCursor<T> (implements mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
        • mpicbg.imglib.cursor.cell.CellLocalizablePlaneCursor<T> (implements mpicbg.imglib.cursor.LocalizablePlaneCursor<T>)
    • mpicbg.imglib.cursor.constant.ConstantCursor<T>
      • mpicbg.imglib.cursor.constant.ConstantLocalizableCursor<T> (implements mpicbg.imglib.cursor.LocalizableCursor<T>)
    • mpicbg.imglib.cursor.constant.ConstantLocalizableByDimCursor<T> (implements mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
      • mpicbg.imglib.cursor.constant.ConstantLocalizableByDimOutOfBoundsCursor<T>
      • mpicbg.imglib.cursor.constant.ConstantLocalizablePlaneCursor<T> (implements mpicbg.imglib.cursor.LocalizablePlaneCursor<T>)
    • mpicbg.imglib.cursor.dynamic.DynamicCursor<T> (implements mpicbg.imglib.cursor.Cursor<T>)
      • mpicbg.imglib.cursor.dynamic.DynamicLocalizableCursor<T> (implements mpicbg.imglib.cursor.LocalizableCursor<T>)
        • mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimCursor<T> (implements mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
          • mpicbg.imglib.cursor.dynamic.DynamicLocalizableByDimOutOfBoundsCursor<T> (implements mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
        • mpicbg.imglib.cursor.dynamic.DynamicLocalizablePlaneCursor<T> (implements mpicbg.imglib.cursor.LocalizablePlaneCursor<T>)
    • mpicbg.imglib.cursor.special.LocalNeighborhoodCursor<T>
      • mpicbg.imglib.cursor.special.LocalNeighborhoodCursor3D<T>
        • mpicbg.imglib.cursor.special.LocalNeighborhoodCursor3DOptimized<T>
    • mpicbg.imglib.cursor.planar.PlanarCursor<T>
      • mpicbg.imglib.cursor.imageplus.ImagePlusCursor<T>
        • mpicbg.imglib.cursor.imageplus.ImagePlusCursor2D<T>
      • mpicbg.imglib.cursor.planar.PlanarCursor2D<T>
      • mpicbg.imglib.cursor.planar.PlanarLocalizableCursor<T> (implements mpicbg.imglib.cursor.LocalizableCursor<T>)
        • mpicbg.imglib.cursor.imageplus.ImagePlusLocalizableCursor<T>
        • mpicbg.imglib.cursor.planar.PlanarLocalizableByDimCursor<T> (implements mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
          • mpicbg.imglib.cursor.imageplus.ImagePlusLocalizableByDimCursor<T>
          • mpicbg.imglib.cursor.planar.PlanarLocalizableByDimOutOfBoundsCursor<T> (implements mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
            • mpicbg.imglib.cursor.imageplus.ImagePlusLocalizableByDimOutOfBoundsCursor<T>
        • mpicbg.imglib.cursor.planar.PlanarLocalizablePlaneCursor<T> (implements mpicbg.imglib.cursor.LocalizablePlaneCursor<T>)
          • mpicbg.imglib.cursor.imageplus.ImagePlusLocalizablePlaneCursor<T>
    • mpicbg.imglib.cursor.special.RegionOfInterestCursor<T> (implements mpicbg.imglib.cursor.LocalizableCursor<T>)
    • mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimCursor<T> (implements mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
      • mpicbg.imglib.cursor.shapelist.ShapeListCachedLocalizableByDimCursor<T>
      • mpicbg.imglib.cursor.shapelist.ShapeListLocalizableByDimOutOfBoundsCursor<T> (implements mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
        • mpicbg.imglib.cursor.shapelist.ShapeListCachedLocalizableByDimOutOfBoundsCursor<T>
      • mpicbg.imglib.cursor.shapelist.ShapeListLocalizablePlaneCursor<T> (implements mpicbg.imglib.cursor.LocalizablePlaneCursor<T>)
        • mpicbg.imglib.cursor.shapelist.ShapeListCachedLocalizablePlaneCursor<T>
  • fiji.features.Curvatures_<T> (implements ij.plugin.PlugIn)
  • fiji.features.Curvatures_.ReverseAbsoluteFloatComparator (implements java.util.Comparator<T>)
  • fiji.plugin.trackmate.tracking.kalman.CVMKalmanFilter
  • org.imagearchive.lsm.reader.info.CZLSMInfo
    • org.imagearchive.lsm.toolbox.info.CZLSMInfoExtended
  • Daltonize_ (implements ij.plugin.filter.PlugInFilter)
  • spim.fiji.plugin.Data_Explorer (implements ij.plugin.PlugIn)
  • customnode.u3d.DataBlock
  • hr.irb.fastRandomForest.DataCache
  • org.imagearchive.lsm.toolbox.info.scaninfo.DataChannel
  • edu.utexas.clm.archipelago.data.DataChunk<T> (implements java.io.Serializable)
    • edu.utexas.clm.archipelago.ijsupport.AbstractAffineModelChunk
    • edu.utexas.clm.archipelago.data.FileChunk
    • edu.utexas.clm.archipelago.ijsupport.FloatProcessorChunk
    • edu.utexas.clm.archipelago.data.SimpleChunk<T> (implements java.io.Serializable)
  • sc.fiji.coloc.gadgets.DataContainer<T>
  • DateUtils
  • ini.trakem2.persistence.DBObject
    • ini.trakem2.display.Display (implements java.awt.event.ActionListener, ij.IJEventListener)
    • ini.trakem2.display.Displayable (implements ini.trakem2.display.Paintable)
      • ini.trakem2.display.DLabel (implements ini.trakem2.display.VectorData)
      • ini.trakem2.display.LayerSet (implements ini.trakem2.display.Bucketable)
      • ini.trakem2.display.Patch (implements ini.trakem2.display.ImageData)
      • ini.trakem2.display.Profile (implements ini.trakem2.display.VectorData)
      • ini.trakem2.display.ZDisplayable
        • ini.trakem2.display.AreaList (implements ini.trakem2.display.AreaContainer, ini.trakem2.display.VectorData)
        • ini.trakem2.display.Ball (implements ini.trakem2.display.VectorData)
        • ini.trakem2.display.Dissector (implements ini.trakem2.display.VectorData)
        • ini.trakem2.display.Pipe (implements ini.trakem2.display.Line3D, ini.trakem2.display.VectorData)
        • ini.trakem2.display.Polyline (implements ini.trakem2.display.Line3D, ini.trakem2.display.VectorData)
        • ini.trakem2.display.Stack (implements ini.trakem2.display.ImageData)
        • ini.trakem2.display.Tree<T> (implements ini.trakem2.display.VectorData)
          • ini.trakem2.display.AreaTree (implements ini.trakem2.display.AreaContainer)
          • ini.trakem2.display.Treeline
            • ini.trakem2.display.Connector
    • ini.trakem2.display.Layer (implements ini.trakem2.display.Bucketable, java.lang.Comparable<T>)
    • ini.trakem2.tree.LayerThing (implements ini.trakem2.tree.TitledThing)
    • ini.trakem2.Project
    • ini.trakem2.tree.ProjectThing (implements ini.trakem2.tree.TitledThing)
    • ini.trakem2.tree.TemplateThing (implements java.lang.Comparable<T>, ini.trakem2.tree.Thing)
  • mpicbg.util.DCT
  • fiji.Debug
  • fiji.plugin.trackmate.tracking.sparselap.costmatrix.DefaultCostMatrixCreator<K,J> (implements fiji.plugin.trackmate.tracking.sparselap.costmatrix.CostMatrixCreator<K,J>)
  • fiji.plugin.trackmate.tracking.sparselap.costmatrix.DefaultCostMatrixCreator.Assignment (implements java.lang.Comparable<T>)
  • bdv.img.cache.DefaultEmptyArrayCreator<A> (implements bdv.img.cache.EmptyArrayCreator<A>)
  • ini.trakem2.display.graphics.DefaultGraphicsSource (implements ini.trakem2.display.graphics.GraphicsSource)
  • org.xml.sax.helpers.DefaultHandler (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
    • sc.fiji.snt.PathAndFillManager (implements ij3d.UniverseListener)
    • ini.trakem2.persistence.TMLHandler
  • spim.process.fusion.export.DefaultImgTitler (implements spim.process.fusion.export.ImgTitler)
  • bdv.util.DefaultInterpolators<T> (implements java.util.function.Function<T,R>)
  • mpicbg.imglib.labeling.DefaultLabelingCursorStrategy<T,L> (implements mpicbg.imglib.labeling.LabelingCursorStrategy<T,L>)
  • mpicbg.imglib.labeling.DefaultLabelingCursorStrategyFactory<T,L> (implements mpicbg.imglib.labeling.LabelingCursorStrategyFactory<T,L>)
  • ini.trakem2.imaging.filters.DefaultMinAndMax (implements ini.trakem2.imaging.filters.IFilter)
  • bdv.viewer.render.DefaultMipmapOrdering (implements bdv.viewer.render.MipmapOrdering)
  • ini.trakem2.display.DefaultMode (implements ini.trakem2.display.Mode)
  • javax.swing.tree.DefaultMutableTreeNode (implements java.lang.Cloneable, javax.swing.tree.MutableTreeNode, java.io.Serializable)
    • org.imagearchive.lsm.toolbox.gui.InfoNode
    • fiji.debugging.Object_Inspector.ObjectWrapper
  • sc.fiji.snt.tracing.DefaultSearchNode (implements java.lang.Comparable<T>, sc.fiji.snt.tracing.SearchNode)
  • edu.utexas.clm.reconstructreader.trakem2.DefaultTemplate (implements edu.utexas.clm.reconstructreader.trakem2.SeriesTemplate)
  • ij3d.DefaultUniverse.GlobalTransform
  • mpicbg.spim.data.sequence.DefaultVoxelDimensions (implements mpicbg.spim.data.sequence.VoxelDimensions)
  • org.jgrapht.graph.DefaultWeightedEdge
    • sc.fiji.snt.analysis.graph.AnnotationWeightedEdge
    • sc.fiji.snt.analysis.graph.SWCWeightedEdge
  • levelsets.algorithm.DeferredArray3D
    • levelsets.algorithm.DeferredByteArray3D
    • levelsets.algorithm.DeferredDoubleArray3D
    • levelsets.algorithm.DeferredIntArray3D
    • levelsets.algorithm.DeferredObjectArray3D<T>
  • spim.fiji.plugin.Define_Bounding_Box (implements ij.plugin.PlugIn)
  • spim.fiji.plugin.Define_Multi_View_Dataset (implements ij.plugin.PlugIn)
  • vib.Deformable_Registration (implements ij.plugin.PlugIn)
  • DeInterleave_ (implements ij.plugin.PlugIn)
  • Delaunay_Voronoi (implements ij.plugin.PlugIn)
  • video2.Delete_Frame (implements ij.plugin.filter.PlugInFilter)
  • DeltaVision_Converter (implements ij.plugin.PlugIn)
  • levelsets.algorithm.DenseFieldLevelSet (implements levelsets.algorithm.StagedAlgorithm)
  • plugin.Descriptor_based_registration (implements ij.plugin.PlugIn)
  • plugin.Descriptor_based_series_registration (implements ij.plugin.PlugIn)
  • plugin.DescriptorParameters
  • Despeckle_ (implements ij.plugin.filter.PlugInFilter)
  • spim.fiji.spimdata.explorer.popup.DetectInterestPointsPopup.MyActionListener (implements java.awt.event.ActionListener)
  • org.imagearchive.lsm.toolbox.info.scaninfo.DetectionChannel
  • mpicbg.spim.registration.detection.DetectionIdentification<S,T>
    • mpicbg.spim.registration.bead.BeadIdentification
    • mpicbg.spim.registration.segmentation.NucleusIdentification
  • mpicbg.spim.registration.detection.DetectionRegistration
  • process.DetectionSegmentation
  • mpicbg.spim.registration.detection.DetectionSegmentation
  • mpicbg.spim.registration.detection.DetectionStructure<T>
    • mpicbg.spim.registration.bead.BeadStructure
    • mpicbg.spim.registration.segmentation.NucleusStructure
  • fiji.plugin.trackmate.detection.DetectionUtils
  • fiji.plugin.trackmate.detection.DetectorKeys
  • mpicbg.imglib.util.DevUtil
  • spim.fiji.datasetmanager.DHM (implements spim.fiji.datasetmanager.MultiViewDatasetDefinition)
  • spim.fiji.datasetmanager.DHMMetaData
  • Dichromacy_ (implements ij.plugin.PlugIn)
  • imglib.ops.operator.binary.Difference (implements imglib.ops.operator.BinaryOperator)
  • sc.fiji.snt.tracing.cost.Difference (implements sc.fiji.snt.tracing.cost.Cost)
    • sc.fiji.snt.tracing.cost.DifferenceSq
  • ini.trakem2.display.graphics.DifferenceARGBComposite (implements java.awt.Composite)
  • mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian<A,B> (implements mpicbg.imglib.algorithm.Algorithm, mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.MultiThreaded)
    • mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianReal<A,B>
      • mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianReal1<A>
        • spim.process.interestpointdetection.DifferenceOfGaussianNewPeakFinder
          • spim.process.interestpointdetection.DifferenceOfGaussianCUDA
  • spim.process.interestpointdetection.DifferenceOfGaussianCUDA.CUDAOutput (implements mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak<T> (implements mpicbg.imglib.algorithm.kdtree.node.Leaf<N>, mpicbg.imglib.cursor.Localizable)
    • mpicbg.stitching.Peak
  • mpicbg.ij.integral.DifferenceOfMean
  • vib.DiffusionInterpol2
    • vib.DiffusionInterpol2_ (implements ij.plugin.filter.PlugInFilter)
  • mpicbg.ij.plugin.DiffusionMask (implements ij.plugin.PlugIn)
  • sc.fiji.snt.tracing.heuristic.Dijkstra (implements sc.fiji.snt.tracing.heuristic.Heuristic)
  • process3d.Dilate_ (implements ij.plugin.filter.PlugInFilter)
  • bdv.img.hdf5.DimsAndExistence
  • fiji.analyze.directionality.Directionality_ (implements ij.plugin.PlugIn)
  • vib.edge.Dirichlet_Edge (implements ij.plugin.filter.PlugInFilter)
  • vib.edge.Dirichlet_Edge.PostProcessHistogram
  • mpicbg.imglib.algorithm.histogram.discrete.DiscreteIntHistogramBinFactory<T> (implements mpicbg.imglib.algorithm.histogram.HistogramBinFactory<T>)
  • ini.trakem2.utils.Dispatcher
  • ini.trakem2.utils.Dispatcher.DispatcherThreadFactory (implements java.util.concurrent.ThreadFactory)
  • mpicbg.imglib.image.display.Display<T>
    • mpicbg.imglib.image.display.BasePairTypeDisplay<T>
    • mpicbg.imglib.image.display.BitTypeDisplay
    • mpicbg.imglib.image.display.ComplexTypePowerSpectrumDisplay<T>
      • mpicbg.imglib.image.display.ComplexTypeComplexValueDisplay<T>
      • mpicbg.imglib.image.display.ComplexTypePhaseSpectrumDisplay<T>
      • mpicbg.imglib.image.display.ComplexTypeRealValueDisplay<T>
    • mpicbg.imglib.image.display.IntegerTypeDisplay<T>
    • mpicbg.imglib.image.display.RealTypeDisplay<T>
    • mpicbg.imglib.image.display.imagej.RGBALegacyTypeDisplay
  • spim.fiji.plugin.Display_View (implements ij.plugin.PlugIn)
  • ini.trakem2.display.Display.GridOverlay
  • ini.trakem2.display.Display3D
  • ini.trakem2.display.Display3D.VectorStringContent
  • ini.trakem2.display.d3d.Display3DGUI
  • ini.trakem2.display.Displayable.DataPackage
  • ini.trakem2.display.Displayable.DoEdit (implements ini.trakem2.display.DoStep)
  • ini.trakem2.display.Displayable.DoEdits (implements ini.trakem2.display.DoStep)
  • ini.trakem2.display.Displayable.DoTransforms (implements ini.trakem2.display.DoStep)
  • ini.trakem2.display.Displayable.SliderListener (implements java.awt.event.AdjustmentListener, java.awt.event.TextListener)
  • ini.trakem2.display.DisplayableChooser (implements java.awt.event.ActionListener)
  • ini.trakem2.display.DisplayCanvas.RepaintProperties (implements ini.trakem2.display.AbstractOffscreenThread.RepaintProperties)
  • ini.trakem2.display.DisplayCanvas.Screenshot
  • ini.trakem2.display.DisplayCanvas.ScreenshotProperties
  • loci.plugins.in.DisplayHandler (implements loci.common.StatusListener)
  • spim.process.fusion.export.DisplayImage (implements spim.process.fusion.export.ImgExportTitle)
  • fiji.plugin.trackmate.gui.displaysettings.DisplaySettings
  • fiji.plugin.trackmate.gui.displaysettings.DisplaySettingsIO
  • spim.fiji.spimdata.explorer.popup.DisplayViewPopup.MyActionListener (implements java.awt.event.ActionListener)
  • sc.fiji.localThickness.Distance_Ridge (implements ij.plugin.filter.PlugInFilter)
  • fiji.util.DistanceComparator<T> (implements java.util.Comparator<T>)
  • mpicbg.imglib.algorithm.kdtree.DistanceComparator<T> (implements java.util.Comparator<T>)
  • process3d.DistanceTransform3D
    • process3d.Distance_Transform_3D (implements ij.plugin.filter.PlugInFilter)
  • lenscorrection.Distortion_Correction (implements ij.plugin.PlugIn)
  • lenscorrection.Distortion_Correction.BasicParam
    • lenscorrection.Distortion_Correction.PluginParam
    • lenscorrection.DistortionCorrectionTask.CorrectDistortionFromSelectionParam
  • lenscorrection.Distortion_Correction.PointMatchCollectionAndAffine
  • lenscorrection.DistortionCorrectionTask
  • imglib.ops.operator.binary.Divide (implements imglib.ops.operator.BinaryOperator)
  • imglib.ops.operator.unary.DivideByConstant (implements imglib.ops.operator.UnaryOperator)
  • ini.trakem2.utils.DNDInsertImage (implements java.awt.dnd.DropTargetListener)
  • mpicbg.spim.registration.bead.laplace.DoGMaximum
  • mpicbg.spim.segmentation.DOM
  • org.imagearchive.lsm.toolbox.DomXmlExporter
  • selection.DoneButtonListener (implements java.awt.event.ActionListener)
  • mpicbg.imglib.container.basictypecontainer.array.DoubleArray (implements mpicbg.imglib.container.basictypecontainer.array.ArrayDataAccess<A>, mpicbg.imglib.container.basictypecontainer.DoubleAccess)
    • mpicbg.imglib.wrapper.ExistingDoubleArrays
  • mpicbg.ij.integral.DoubleIntegralImage (implements mpicbg.ij.integral.IntegralImage)
  • spim.process.interestpointdetection.Downsample
  • bdv.export.Downsample
  • mpicbg.imglib.algorithm.gauss.DownSample<T> (implements mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.MultiThreaded, mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • mpicbg.stitching.Downsampler
  • mpicbg.trakem2.util.Downsampler
  • mpicbg.trakem2.util.Downsampler.Entry
  • mpicbg.trakem2.util.Downsampler.Pair<A,B>
  • ini.trakem2.persistence.DownsamplerMipMaps
  • video2.Draw_Roi (implements ij.plugin.filter.PlugInFilter)
  • mpicbg.trakem2.transform.DTD
  • ini.trakem2.tree.DTDParser
  • edu.utexas.clm.archipelago.network.shell.DummyNodeShell (implements edu.utexas.clm.archipelago.network.shell.NodeShell)
  • bdv.util.DumpInputConfig
  • edu.utexas.clm.archipelago.data.Duplex<A,B> (implements java.io.Serializable)
  • video2.Duplicate_Frame (implements ij.plugin.filter.PlugInFilter)
  • sc.fiji.i5d.plugin.Duplicate_Image5D (implements ij.plugin.PlugIn)
  • spim.fiji.plugin.Duplicate_Transformation (implements ij.plugin.PlugIn)
  • fiji.stacks.Dynamic_Reslice (implements java.awt.event.MouseMotionListener, ij.plugin.PlugIn, java.awt.event.WindowListener)
  • mpicbg.imglib.container.dynamic.DynamicContainerAccessor (implements mpicbg.imglib.container.basictypecontainer.DataAccess)
    • mpicbg.imglib.container.dynamic.BitDynamicContainerAccessor (implements mpicbg.imglib.container.basictypecontainer.BitAccess)
    • mpicbg.imglib.container.dynamic.ByteDynamicContainerAccessor (implements mpicbg.imglib.container.basictypecontainer.ByteAccess)
    • mpicbg.imglib.container.dynamic.CharDynamicContainerAccessor (implements mpicbg.imglib.container.basictypecontainer.CharAccess)
    • mpicbg.imglib.container.dynamic.DoubleDynamicContainerAccessor (implements mpicbg.imglib.container.basictypecontainer.DoubleAccess)
    • mpicbg.imglib.container.dynamic.FloatDynamicContainerAccessor (implements mpicbg.imglib.container.basictypecontainer.FloatAccess)
    • mpicbg.imglib.container.dynamic.IntDynamicContainerAccessor (implements mpicbg.imglib.container.basictypecontainer.IntAccess)
    • mpicbg.imglib.container.dynamic.LongDynamicContainerAccessor (implements mpicbg.imglib.container.basictypecontainer.LongAccess)
    • mpicbg.imglib.container.dynamic.ShortDynamicContainerAccessor (implements mpicbg.imglib.container.basictypecontainer.ShortAccess)
  • sc.fiji.coloc.results.EasyDisplay<T> (implements sc.fiji.coloc.results.ResultHandler<T>)
  • sc.fiji.analyzeSkeleton.Edge
  • customnode.EdgeContraction
  • vib.EdgeDetectors_ (implements ij.plugin.filter.PlugInFilter)
  • video.Edit_Video (implements java.awt.event.ActionListener, ij.plugin.PlugIn)
  • vib.EditAmiraParameters_ (implements java.awt.event.ActionListener, ij.plugin.PlugIn, java.awt.event.TextListener)
  • ini.trakem2.vector.Editions
  • ini.trakem2.vector.Editions.Chunk
  • fiji.process3d.EDT (implements ij.plugin.filter.PlugInFilter)
  • sc.fiji.localThickness.EDT_S1D (implements ij.plugin.filter.PlugInFilter)
  • spim.process.fusion.deconvolution.EfficientBayesianBased.Correspondence
  • math3d.Eigensystem2x2Double
  • math3d.Eigensystem2x2Float
  • math3d.Eigensystem3x3Double
  • math3d.Eigensystem3x3Float
  • mpicbg.ij.plugin.ElasticAlign (implements java.awt.event.KeyListener, ij.plugin.PlugIn)
  • mpicbg.trakem2.align.ElasticLayerAlignment
  • mpicbg.ij.plugin.ElasticMontage (implements ij.plugin.PlugIn)
  • mpicbg.trakem2.align.ElasticMontage
  • mpicbg.trakem2.align.ElasticMontage.Param (implements java.io.Serializable)
  • vib.ElasticTransform_ (implements ij.plugin.filter.PlugInFilter)
  • vib.ElasticTransformedImage
  • bdv.viewer.render.EmptyProjector<T> (implements bdv.viewer.render.VolatileProjector)
  • sc.fiji.snt.gui.cmds.EnableSciViewUpdateSiteCmd (implements org.scijava.command.Command)
  • ini.trakem2.imaging.filters.EnhanceContrast (implements ini.trakem2.imaging.filters.IFilter)
  • mpicbg.spim.data.generic.base.Entity
    • mpicbg.spim.data.generic.sequence.BasicViewSetup
      • mpicbg.spim.data.sequence.ViewSetup (implements java.lang.Comparable<T>)
      • bdv.ij.export.ViewSetupWrapper
    • mpicbg.spim.data.generic.base.NamedEntity
      • mpicbg.spim.data.sequence.Angle (implements java.lang.Comparable<T>)
      • mpicbg.spim.data.sequence.Channel (implements java.lang.Comparable<T>)
      • spim.fiji.spimdata.EmptyEntity
      • mpicbg.spim.data.sequence.Illumination (implements java.lang.Comparable<T>)
      • mpicbg.spim.data.sequence.Tile (implements java.lang.Comparable<T>)
    • mpicbg.spim.data.sequence.TimePoint
  • mpicbg.spim.data.generic.base.EntityUtils
  • mpicbg.spim.fusion.entropy.Entropy
  • trainableSegmentation.filters.Entropy_Filter (implements ij.plugin.filter.PlugInFilter)
  • mpicbg.spim.fusion.EntropyFastFactory (implements mpicbg.spim.fusion.IsolatedPixelWeightenerFactory<I>)
  • mpicbg.spim.fusion.entropy.EntropyFloatArray3D
  • edu.utexas.clm.archipelago.example.Equality_Example (implements ij.plugin.PlugIn)
  • edu.utexas.clm.archipelago.example.Equality_Example.EqCall (implements edu.utexas.clm.archipelago.compute.SerializableCallable<T>)
  • ini.trakem2.imaging.filters.EqualizeHistogram (implements ini.trakem2.imaging.filters.IFilter)
  • process3d.Erode_ (implements ij.plugin.filter.PlugInFilter)
  • pal.math.ErrorFunction
  • stitching.model.ErrorStatistic
  • mpicbg.models.ErrorStatistic
  • org.janelia.thickness.EstimateScalingFactors
  • distance.Euclidean (implements distance.PixelPairs)
  • sc.fiji.snt.tracing.heuristic.Euclidean (implements sc.fiji.snt.tracing.heuristic.Heuristic)
  • org.imagearchive.lsm.toolbox.info.Event
  • org.imagearchive.lsm.toolbox.info.EventList
  • java.util.EventObject (implements java.io.Serializable)
    • java.awt.AWTEvent
      • java.awt.event.ComponentEvent
        • java.awt.event.InputEvent
          • java.awt.event.KeyEvent
            • org.janelia.utility.ui.RepeatingReleasedEventsFixer.RepostedKeyEvent (implements org.janelia.utility.ui.RepeatingReleasedEventsFixer.Reposted)
    • DisplayChangeEvent
    • fiji.plugin.trackmate.ModelChangeEvent
    • fiji.plugin.trackmate.SelectionChangeEvent
  • fiji.plugin.trackmate.util.EverythingDisablerAndReenabler
  • ij3d.Executer
  • ini.trakem2.parallel.ExecutorProvider
    • ini.trakem2.parallel.DefaultExecutorProvider
  • imglib.ops.operator.unary.Exp (implements imglib.ops.operator.UnaryOperator)
  • sc.fiji.io.Export_EPS (implements ij.plugin.filter.PlugInFilter)
  • fiji.plugin.trackmate.action.ExportAllSpotsStatsAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • mpicbg.trakem2.transform.ExportARGB
  • mpicbg.trakem2.transform.ExportBestFlatImage
  • bdv.ij.ExportCellVoyagerPlugIn (implements org.scijava.command.Command)
  • bdv.ij.ExportCellVoyagerPlugIn.Parameters
  • mpicbg.trakem2.transform.ExportedTile
  • loci.plugins.out.Exporter
  • bdv.ij.ExportImagePlusAsN5PlugIn (implements org.scijava.command.Command)
  • bdv.ij.ExportImagePlusAsN5PlugIn.Parameters
  • bdv.ij.ExportImagePlusPlugIn (implements org.scijava.command.Command)
  • bdv.ij.ExportImagePlusPlugIn.Parameters
  • marchingcubes.ExportMesh_ (implements ij.plugin.PlugIn)
  • ini.trakem2.persistence.ExportMultilevelTiles
  • bdv.export.ExportScalePyramid
  • bdv.export.ExportScalePyramid.Block<T>
  • bdv.export.ExportScalePyramid.DefaultLoopbackHeuristic (implements bdv.export.ExportScalePyramid.LoopbackHeuristic)
  • spim.process.fusion.export.ExportSpimData2HDF5 (implements spim.process.fusion.export.ImgExport)
  • spim.process.fusion.export.ExportSpimData2TIFF (implements spim.process.fusion.export.ImgExport)
  • spim.process.fusion.export.ExportSpimData2TIFF.FileNamePattern
  • bdv.ij.ExportSpimFusionPlugIn (implements org.scijava.command.Command)
  • bdv.ij.ExportSpimFusionPlugIn.Parameters
  • bdv.ij.ExportSpimSequencePlugIn (implements org.scijava.command.Command)
  • bdv.ij.ExportSpimSequencePlugIn.Parameters
  • fiji.plugin.trackmate.action.ExportStatsTablesAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.action.ExportTracksToXML.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • mpicbg.trakem2.transform.ExportUnsignedByte
  • mpicbg.trakem2.transform.ExportUnsignedByte.ImageData
  • mpicbg.trakem2.transform.ExportUnsignedByte.MipMapSource (implements mpicbg.trakem2.transform.ExportUnsignedByte.ImageSource)
  • mpicbg.trakem2.transform.ExportUnsignedByte.OriginalSource (implements mpicbg.trakem2.transform.ExportUnsignedByte.ImageSource)
  • mpicbg.trakem2.transform.ExportUnsignedShort
  • mpicbg.trakem2.transform.ExportUnsignedShort.PatchIntensityRange
  • mpicbg.trakem2.transform.ExportUnsignedShort.PatchTransform
  • util.Exposure_Blend_Two_Stacks (implements ij.plugin.PlugIn)
  • sc.fiji.io.Extract_Images_From_PDF (implements ij.plugin.PlugIn)
  • vib.Extract_Surface (implements ij.plugin.filter.PlugInFilter)
  • mpicbg.spim.postprocessing.deconvolution.ExtractPSF
  • spim.process.fusion.deconvolution.ExtractPSF<T>
  • fiji.plugin.trackmate.action.ExtractTrackStackAction.ExtractTrackStackActionFactory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • sc.fiji.timelapse.Extrema
  • sc.fiji.snt.gui.FADerivedIcon (implements javax.swing.Icon)
  • mpicbg.imglib.container.basictypecontainer.array.FakeArray (implements mpicbg.imglib.container.basictypecontainer.array.ArrayDataAccess<A>, mpicbg.imglib.container.basictypecontainer.FakeAccess)
  • registration3d.Fast_FourierTransform (implements ij.plugin.PlugIn)
  • registration3d.Fast_FourierTransform.FloatArray
    • registration3d.Fast_FourierTransform.FloatArray2D
    • registration3d.Fast_FourierTransform.FloatArray3D
  • ini.trakem2.imaging.FastIntegralImage
  • levelsets.algorithm.FastMarching (implements levelsets.algorithm.StagedAlgorithm)
  • vib.FastMatrix
    • vib.transforms.FastMatrixTransform (implements vib.transforms.Transform)
  • math3d.FastMatrixN
  • hr.irb.fastRandomForest.FastRfUtils
  • mpicbg.imagefeatures.Feature (implements java.lang.Comparable<T>, java.io.Serializable)
  • fiji.plugin.trackmate.gui.components.FeatureDisplaySelector
  • fiji.plugin.trackmate.features.FeatureFilter
  • fiji.plugin.trackmate.FeatureModel
  • fiji.plugin.trackmate.tracking.sparselap.costfunction.FeaturePenaltyCostFunction (implements fiji.plugin.trackmate.tracking.sparselap.costfunction.CostFunction<K,J>)
  • trainableSegmentation.FeatureStack
  • trainableSegmentation.FeatureStack3D
  • trainableSegmentation.FeatureStackArray
  • mpicbg.ij.FeatureTransform<T>
    • mpicbg.ij.MOPS
    • mpicbg.ij.SIFT
  • fiji.plugin.trackmate.features.FeatureUtils
  • org.janelia.it.jacs.shared.ffmpeg.FFMpegLoader
  • sc.fiji.timelapse.FFT
  • process3d.FFT_ (implements ij.plugin.filter.PlugInFilter)
  • process3d.FFT_.TestData
  • mpicbg.imglib.algorithm.fft.FFTFunctions
  • util.FibonacciHeap<T> (implements java.lang.Comparable<T>)
  • util.FibonacciHeapDouble
  • util.FibonacciHeapInt
  • sc.fiji.io.FIBSEM_Reader (implements ij.plugin.PlugIn)
  • sc.fiji.io.FIBSEM_Reader.FIBSEMData
  • ini.trakem2.utils.FieldMapView (implements java.util.Map<K,V>)
  • edu.utexas.clm.archipelago.Fiji_Archipelago (implements ij.plugin.PlugIn)
  • org.janelia.it.h5j.fiji.adapter.FijiAdapter
  • edu.utexas.clm.archipelago.FijiArchipelago
  • util.FileAndChannel
  • edu.utexas.clm.archipelago.network.translation.FileBottle (implements edu.utexas.clm.archipelago.network.translation.Bottle<A>)
  • edu.utexas.clm.archipelago.network.translation.FileBottler (implements edu.utexas.clm.archipelago.network.translation.Bottler<A>)
  • fiji.plugin.trackmate.util.FileChooser
  • util.FileCreation
  • sc.fiji.snt.gui.FileDrop
  • javax.swing.filechooser.FileFilter
    • org.imagearchive.lsm.toolbox.gui.AllKnownFilter
    • org.imagearchive.lsm.toolbox.gui.BatchFilter
    • fiji.plugin.trackmate.util.DefaultFileFilter
    • fiji.plugin.trackmate.util.DefaultFileFilter.EditorFileFilter
    • fiji.plugin.trackmate.util.DefaultFileFilter.ImageFileFilter
    • org.siox.example.ExtensionFileFilter
    • org.imagearchive.lsm.toolbox.gui.ImageFilter
  • ij.io.FileInfo (implements java.lang.Cloneable)
    • org.imagearchive.lsm.reader.info.LSMFileInfo
  • ini.trakem2.persistence.FilePathRepair
  • octree.FilePreparer
  • org.janelia.thickness.inference.visitor.FileSaverVisitor (implements org.janelia.thickness.inference.visitor.Visitor)
    • org.janelia.thickness.inference.visitor.CSVVisitor
      • org.janelia.thickness.inference.visitor.CorrelationFitVisitor
      • org.janelia.thickness.inference.visitor.LUTVisitor
      • org.janelia.thickness.inference.visitor.PermutedLUTVisitor
      • org.janelia.thickness.inference.visitor.PermutedScalingFactorsVisitor
      • org.janelia.thickness.inference.visitor.ScalingFactorsVisitor
    • org.janelia.thickness.inference.visitor.MatrixVisitor
  • edu.utexas.clm.reconstructreader.trakem2.FileTemplate
  • sc.fiji.snt.Fill
  • Fill_holes (implements ij.plugin.PlugIn)
  • sc.fiji.snt.Fill.Node
  • sc.fiji.snt.FillConverter
  • sc.fiji.snt.tracing.artist.FillerThreadArtist (implements sc.fiji.snt.tracing.artist.SearchArtist)
  • mpicbg.ij.util.Filter
  • mpicbg.imagefeatures.Filter
  • ini.trakem2.imaging.filters.FilterEditor
  • bunwarpj.FinalAction (implements java.lang.Runnable)
  • mpicbg.spim.data.sequence.FinalVoxelDimensions (implements mpicbg.spim.data.sequence.VoxelDimensions)
  • util.Find_Connected_Regions (implements ij.plugin.PlugIn)
  • Find_PointRoi (implements ij.plugin.PlugIn)
  • util.FindConnectedRegions
  • util.FindConnectedRegions.PointState
  • util.FindConnectedRegions.Region (implements java.lang.Comparable<T>)
  • util.FindConnectedRegions.Results
  • FindIt_ (implements ij.plugin.filter.PlugInFilter)
  • process3d.FindMinima
    • process3d.Find_Minima (implements ij.plugin.filter.PlugInFilter)
  • spim.process.fusion.deconvolution.FirstIteration (implements java.util.concurrent.Callable<V>)
  • vib.Fit_Sphere (implements ij.plugin.PlugIn)
  • bdv.ij.export.FixAbsolutePathsInHdf5Partitions
  • spim.process.fusion.export.FixedNameImgTitler (implements spim.process.fusion.export.ImgTitler)
  • fiji.plugin.trackmate.tracking.kdtree.FlagNode<K>
  • mpicbg.ij.clahe.Flat
    • mpicbg.ij.clahe.FastFlat
  • loci.plugins.config.FlexWidgets (implements javax.swing.event.DocumentListener, loci.plugins.config.IFormatWidgets)
  • stitching.FloatArray
    • stitching.FloatArray2D
    • stitching.FloatArray3D
  • mpicbg.imglib.container.basictypecontainer.array.FloatArray (implements mpicbg.imglib.container.basictypecontainer.array.ArrayDataAccess<A>, mpicbg.imglib.container.basictypecontainer.FloatAccess)
    • mpicbg.imglib.wrapper.ExistingFloatArrays
  • mpicbg.imagefeatures.FloatArray
    • mpicbg.imagefeatures.FloatArray2D
  • mpi.fruitfly.math.datastructures.FloatArray
    • mpi.fruitfly.math.datastructures.FloatArray2D
    • mpi.fruitfly.math.datastructures.FloatArray3D
    • mpi.fruitfly.math.datastructures.FloatArray4D
  • mpicbg.imagefeatures.FloatArray2DFeatureTransform<P>
    • mpicbg.imagefeatures.FloatArray2DMOPS
    • mpicbg.imagefeatures.FloatArray2DSIFT
  • mpicbg.imagefeatures.FloatArray2DMOPS.Param
  • mpicbg.imagefeatures.FloatArray2DScaleOctave
  • mpicbg.imagefeatures.FloatArray2DScaleOctaveDoGDetector
  • mpicbg.imagefeatures.FloatArray2DSIFT.Param (implements java.io.Serializable)
  • script.imglib.math.fn.FloatImageOperation (implements script.imglib.math.fn.IFunction, script.imglib.math.fn.ImageComputation<T>)
    • script.imglib.math.fn.BinaryOperation
      • script.imglib.math.Add
      • script.imglib.math.And
      • script.imglib.math.ATan2
      • script.imglib.math.Average
      • script.imglib.math.Difference
      • script.imglib.math.Divide
      • script.imglib.math.Hypot
      • script.imglib.math.IEEEremainder
      • script.imglib.math.Max
      • script.imglib.math.Min
      • script.imglib.math.Multiply
      • script.imglib.math.Or
      • script.imglib.math.Pow
      • script.imglib.math.Subtract
      • script.imglib.math.Xor
    • script.imglib.math.fn.UnaryOperation
      • script.imglib.math.Abs
      • script.imglib.math.ACos
      • script.imglib.math.ASin
      • script.imglib.math.ATan
      • script.imglib.math.Cbrt
      • script.imglib.math.Ceil
      • script.imglib.math.Cos
      • script.imglib.math.Cosh
      • script.imglib.math.Exp
      • script.imglib.math.Expm1
      • script.imglib.math.Floor
      • script.imglib.math.Log
      • script.imglib.math.Log10
      • script.imglib.math.Log1p
      • script.imglib.math.Random
      • script.imglib.math.Rint
      • script.imglib.math.Round
      • script.imglib.math.Signum
      • script.imglib.math.Sin
      • script.imglib.math.Sinh
      • script.imglib.math.Sqrt
      • script.imglib.math.Tan
      • script.imglib.math.Tanh
      • script.imglib.math.ToDegrees
      • script.imglib.math.ToRadians
  • vib.FloatMatrix
  • math3d.FloatMatrixN
  • process3d.Flood_Fill (implements ij.plugin.PlugIn)
  • FlowJ_ (implements ij.plugin.PlugIn)
  • mpicbg.imglib.algorithm.floydsteinberg.FloydSteinbergDithering<T> (implements mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • sc.fiji.snt.io.FlyCircuitLoader (implements sc.fiji.snt.io.RemoteSWCLoader)
  • fsalign.FolderWatcher.FolderFilter (implements java.io.FileFilter)
  • fiji.plugin.trackmate.gui.Fonts
  • java.text.Format (implements java.lang.Cloneable, java.io.Serializable)
    • java.text.DateFormat
      • HybridDateFormat
  • loci.plugins.config.FormatEntry (implements java.lang.Comparable<T>)
  • mpicbg.imglib.algorithm.fft.FourierConvolution<T,S> (implements mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.MultiThreaded, mpicbg.imglib.algorithm.OutputAlgorithm<T>)
    • mpicbg.imglib.algorithm.fft.InverseFourierConvolution<T,S>
  • mpicbg.imglib.algorithm.fft.FourierTransform<T,S> (implements mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.MultiThreaded, mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • org.janelia.it.jacs.shared.ffmpeg.Frame
  • fiji.features.Frangi_<T> (implements ij.plugin.PlugIn)
  • fiji.features.Frangi_.AbsoluteFloatComparator (implements java.util.Comparator<T>)
  • fiji.features.Frangi_.Progress (implements fiji.features.MultiTaskProgress)
  • fiji.features.Frangi_.VesselnessCalculator<T> (implements java.util.concurrent.Callable<V>)
  • ini.trakem2.display.FreeHandProfile
  • fiji.plugin.trackmate.graph.FromContinuousBranches (implements net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.OutputAlgorithm<F>)
  • fsalign.FS_Align_TrakEM2 (implements ij.plugin.PlugIn)
  • customnode.FullInfoMesh
  • customnode.FullInfoMesh.Edge
  • customnode.FullInfoMesh.Triangle
  • spim.fiji.plugin.fusion.Fusion
    • spim.process.fusion.deconvolution.EfficientBayesianBased
    • spim.process.fusion.weightedavg.WeightedAverageFusion
  • mpicbg.stitching.fusion.Fusion
  • mpicbg.spim.fusion.FusionControl
  • spim.process.fusion.FusionHelper
  • bdv.ij.export.imgloader.FusionImageLoader<T> (implements mpicbg.spim.data.sequence.ImgLoader)
  • bdv.ij.export.imgloader.FusionImageLoader.ArrayImgLoader<T> (implements bdv.ij.export.imgloader.FusionImageLoader.SliceLoader<T>)
  • bdv.ij.export.imgloader.FusionImageLoader.Gray16ImagePlusLoader (implements bdv.ij.export.imgloader.FusionImageLoader.SliceLoader<T>)
  • bdv.ij.export.imgloader.FusionImageLoader.Gray32ImagePlusLoader (implements bdv.ij.export.imgloader.FusionImageLoader.SliceLoader<T>)
  • bdv.ij.export.imgloader.FusionImageLoader.Gray8ImagePlusLoader (implements bdv.ij.export.imgloader.FusionImageLoader.SliceLoader<T>)
  • bdv.ij.export.imgloader.FusionImageLoader.SetupLoader (implements mpicbg.spim.data.sequence.SetupImgLoader<T>)
  • spim.fiji.spimdata.explorer.popup.FusionPopup.MyActionListener (implements java.awt.event.ActionListener)
  • bdv.ij.export.FusionResult
  • imglib.ops.operator.unary.Gamma (implements imglib.ops.operator.UnaryOperator)
  • pal.math.GammaFunction
  • mpicbg.spim.fusion.GaussContentFactory (implements mpicbg.spim.fusion.IsolatedPixelWeightenerFactory<I>)
  • sc.fiji.timelapse.Gaussian_Stack_Focuser (implements ij.plugin.filter.PlugInFilter)
  • fiji.plugin.trackmate.action.fit.Gaussian2DFixedRadius (implements net.imglib2.algorithm.localization.FitFunction)
  • fiji.plugin.trackmate.action.fit.Gaussian3D (implements net.imglib2.algorithm.localization.FitFunction)
  • fiji.plugin.trackmate.action.fit.Gaussian3DFixedRadius (implements net.imglib2.algorithm.localization.FitFunction)
  • ini.trakem2.imaging.filters.GaussianBlur (implements ini.trakem2.imaging.filters.IFilter)
  • mpicbg.imglib.algorithm.gauss.GaussianConvolution3<A,B,C> (implements mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.MultiThreaded, mpicbg.imglib.algorithm.OutputAlgorithm<T>)
    • mpicbg.imglib.algorithm.gauss.GaussianConvolution<T>
      • mpicbg.imglib.algorithm.gauss.GaussianConvolutionReal<T>
    • mpicbg.imglib.algorithm.gauss.GaussianConvolution2<A,B>
    • mpicbg.imglib.algorithm.gauss.GaussianConvolution4<A,B,C>
  • process.GaussianMaskFit
  • mpicbg.imglib.algorithm.peak.GaussianMultiDLM (implements mpicbg.imglib.algorithm.peak.FitFunction)
  • mpicbg.imglib.algorithm.peak.GaussianPeakFitterND<T>
  • spimopener.GaussianStackFocuser (implements spimopener.Projector)
  • mpi.fruitfly.math.General
  • spim.fiji.plugin.resave.Generic_Resave_HDF5 (implements ij.plugin.PlugIn)
  • spim.fiji.plugin.resave.Generic_Resave_HDF5.Parameters
  • mpicbg.imglib.cursor.link.GenericCursorLink<T> (implements mpicbg.imglib.cursor.link.CursorLink)
  • spim.fiji.plugin.queryXML.GenericLoadParseQueryXML<AS,S,V,D,L,X>
    • spim.fiji.plugin.queryXML.LoadParseQueryXML
  • sc.fiji.omevisual.gui.model.GenericModel<T>
    • sc.fiji.omevisual.gui.model.ImageModel
    • sc.fiji.omevisual.gui.model.TiffDataModel
  • spim.process.interestpointregistration.geometrichashing.GeometricHasher
  • spim.process.interestpointregistration.geometrichashing.GeometricHashingPairwise (implements java.util.concurrent.Callable<V>)
  • spim.process.interestpointregistration.geometrichashing.GeometricHashingParameters
  • octree.GeometryCreator (implements ij3d.AxisConstants)
  • voltex.GeometryCreator (implements ij3d.AxisConstants)
  • sc.fiji.io.Gif_Stack_Writer (implements ij.plugin.PlugIn)
  • fiji.plugin.trackmate.visualization.GlasbeyLut
  • org.janelia.thickness.inference.visitor.GlobalCorrelationFitVisitor (implements org.janelia.thickness.inference.visitor.Visitor)
  • mpicbg.spim.registration.bead.error.GlobalErrorStatisticsImpl (implements mpicbg.spim.registration.bead.error.GlobalErrorStatistics)
  • spim.process.interestpointregistration.GlobalOpt
  • mpicbg.stitching.GlobalOptimization
  • spim.process.interestpointregistration.optimizationtypes.GlobalOptimizationSubset
  • spim.process.interestpointregistration.optimizationtypes.GlobalOptimizationType
    • spim.process.interestpointregistration.optimizationtypes.AllToAllRegistration
    • spim.process.interestpointregistration.optimizationtypes.AllToAllRegistrationWithRange
    • spim.process.interestpointregistration.optimizationtypes.IndividualTimepointRegistration
    • spim.process.interestpointregistration.optimizationtypes.ReferenceTimepointRegistration
  • process3d.Gradient
    • process3d.Gradient_ (implements ij.plugin.filter.PlugInFilter)
  • mpicbg.imglib.algorithm.labeling.GradientWatershed<T,L> (implements mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • sc.fiji.analyzeSkeleton.Graph
  • graphcut.Graph
  • ini.trakem2.analysis.Graph
  • graphcut.Graph_Cut<T> (implements ij.plugin.PlugIn)
  • graphcut.GraphCut
  • sc.fiji.analyzeSkeleton.ita.GraphPruning
  • fiji.plugin.trackmate.tracking.sparselap.costmatrix.GraphSegmentSplitter
  • fiji.plugin.trackmate.graph.GraphUtils
  • sc.fiji.snt.analysis.graph.GraphUtils
  • sc.fiji.snt.viewer.GraphViewer
  • GrayMorphology_ (implements mmorpho.Constants, ij.plugin.filter.PlugInFilter)
  • levelsets.filter.GreyScaleFilter (implements levelsets.filter.Filter)
  • stitching.GridLayout
  • bigwarp.source.GridSource<T> (implements bdv.viewer.Source<T>)
  • plugin.GridType
  • sc.fiji.snt.analysis.GroupedTreeStatistics
  • ini.trakem2.display.GroupingMode (implements ini.trakem2.display.Mode)
    • ini.trakem2.display.ContrastAdjustmentMode
    • ini.trakem2.display.NonLinearTransformMode
  • ini.trakem2.display.GroupingMode.GroupedGraphicsSource (implements ini.trakem2.display.graphics.GraphicsSource)
  • ini.trakem2.display.GroupingMode.PatchRange
  • ini.trakem2.display.GroupingMode.ScreenPatchRange<T> (implements ini.trakem2.display.Paintable)
  • gui.GuiBuilder
  • spim.fiji.plugin.util.GUIHelper
  • org.imagearchive.lsm.toolbox.gui.GUIMaker
  • fiji.plugin.trackmate.gui.GuiUtils
  • sc.fiji.snt.gui.GuiUtils
  • org.janelia.it.jacs.shared.ffmpeg.H5JLoader
  • process3d.Harris_Corner_Detector (implements ij.plugin.filter.PlugInFilter)
  • sc.fiji.hdf5.HDF5_Simple_Custom_Reader (implements ij.plugin.PlugIn)
  • sc.fiji.hdf5.HDF5_Simple_Reader (implements ij.plugin.PlugIn)
  • sc.fiji.hdf5.HDF5_Simple_Writer (implements ij.plugin.filter.PlugInFilter)
  • bdv.img.imaris.HDF5AccessHack (implements bdv.img.imaris.IHDF5Access)
  • sc.fiji.hdf5.HDF5ImageJ
  • bdv.img.hdf5.Hdf5ImageLoader (implements mpicbg.spim.data.sequence.MultiResolutionImgLoader, bdv.ViewerImgLoader)
  • bdv.img.hdf5.Hdf5VolatileShortArrayLoader (implements bdv.img.cache.CacheArrayLoader<A>)
  • edu.utexas.clm.archipelago.data.HeartBeat (implements java.io.Serializable)
  • Helmholtz_Analysis (implements ij.plugin.filter.PlugInFilter)
  • features.Hessian_CP_Measures (implements features.GaussianGenerationCallback, ij.plugin.PlugIn)
  • features.HessianEvalueProcessor (implements features.GaussianGenerationCallback)
    • features.SurfacenessProcessor
    • features.TubenessProcessor
  • mpicbg.imglib.algorithm.histogram.Histogram<T> (implements mpicbg.imglib.algorithm.Algorithm, mpicbg.imglib.algorithm.Benchmark)
  • util.Histogram_2D (implements ij.plugin.PlugIn)
  • util.Histogram_2D.Statistics
  • mpicbg.imglib.algorithm.histogram.HistogramBin<T>
    • mpicbg.imglib.algorithm.histogram.discrete.DiscreteIntHistogramBinFactory.DiscreteIntHistogramBin
    • mpicbg.imglib.algorithm.histogram.arbitrary.RealHistogramBinFactory.RealHistogramBin
  • mpicbg.imglib.algorithm.histogram.HistogramKey<T>
  • histogram2.HistogramMatcher
  • histogram2.HistogramPlot
  • ini.trakem2.utils.History
  • mpicbg.imglib.algorithm.transformation.HoughTransform<S,T> (implements mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.OutputAlgorithm<T>)
    • mpicbg.imglib.algorithm.transformation.HoughLineTransform<S,T>
  • bdv.ij.export.imgloader.HuiskenImageLoader (implements mpicbg.spim.data.generic.sequence.BasicImgLoader)
  • bdv.ij.export.imgloader.HuiskenImageLoader.SetupLoader (implements mpicbg.spim.data.generic.sequence.BasicSetupImgLoader<T>)
  • mpicbg.imglib.cursor.special.HyperSphereIterator<T> (implements mpicbg.imglib.cursor.Iterable, mpicbg.imglib.cursor.Localizable, mpicbg.imglib.cursor.LocalizableCursor<T>)
  • fiji.stacks.Hyperstack_rearranger (implements ij.plugin.PlugIn)
  • fiji.plugin.trackmate.visualization.hyperstack.HyperStackDisplayerFactory (implements fiji.plugin.trackmate.visualization.ViewFactory)
  • sc.fiji.i5d.plugin.Hypervolume_Opener (implements ij.plugin.PlugIn)
  • sc.fiji.i5d.plugin.I5D_about (implements ij.plugin.PlugIn)
  • sc.fiji.io.Icns_Writer (implements ij.plugin.PlugIn)
  • sc.fiji.io.icns.IcnsCodec
  • sc.fiji.io.ICO_Writer (implements ij.plugin.PlugIn)
  • sc.fiji.snt.gui.IconFactory
  • fiji.plugin.trackmate.gui.Icons
  • sc.fiji.io.icns.IconSuite
  • mpicbg.icp.ICP<P>
  • fiji.plugin.trackmate.action.IcyTrackExporter.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.io.IcyTrackFormatWriter (implements net.imglib2.algorithm.Algorithm, net.imglib2.algorithm.Benchmark)
  • lineage.Identify (implements ini.trakem2.plugin.TPlugIn)
  • process3d.IFT_ (implements ij.plugin.filter.PlugInFilter)
  • process3d.IFT_.Cls
  • IJ_Robot (implements ij.plugin.PlugIn)
  • ij3d.IJAdapter (implements ij3d.UIAdapter)
  • ini.trakem2.utils.IJError
  • edu.utexas.clm.archipelago.util.IJLogger (implements edu.utexas.clm.archipelago.util.EasyLogger)
  • edu.utexas.clm.archipelago.util.IJPopupLogger (implements edu.utexas.clm.archipelago.util.EasyLogger)
  • org.imagearchive.lsm.toolbox.info.scaninfo.IlluminationChannel
  • mpicbg.imglib.image.Image<T> (implements java.util.Collection<E>, mpicbg.imglib.cursor.vector.Dimensionality, mpicbg.imglib.container.ImageProperties)
    • script.imglib.algorithm.fn.AbstractAffine3D<T>
      • script.imglib.algorithm.Affine3D<T>
        • script.imglib.algorithm.Affine2D<N>
        • script.imglib.algorithm.Scale2D<N>
        • script.imglib.algorithm.Scale3D<N>
    • script.imglib.algorithm.fn.AbstractNormalize<T>
      • script.imglib.algorithm.Normalize<N>
    • script.imglib.algorithm.BandpassFilter<T>
    • script.imglib.algorithm.Dither<T>
    • script.imglib.algorithm.Downsample<T>
    • script.imglib.algorithm.FFT<T>
    • script.imglib.algorithm.Gauss<T>
    • script.imglib.algorithm.HoughLineTransform<T>
    • script.imglib.algorithm.InverseFFT<T>
    • mpicbg.imglib.labeling.Labeling<T>
    • script.imglib.algorithm.MedianFilter<T>
    • script.imglib.algorithm.fn.Morph<T>
      • script.imglib.algorithm.Close<T>
      • script.imglib.algorithm.Dilate<T>
      • script.imglib.algorithm.Erode<T>
      • script.imglib.algorithm.Open<T>
    • script.imglib.algorithm.NormalizeSum<T>
    • script.imglib.algorithm.Resample<N>
    • mpicbg.imglib.algorithm.roi.StructuringElement
  • fiji.process.Image_Expression_Parser<T> (implements net.imglib2.algorithm.OutputAlgorithm<F>, ij.plugin.PlugIn)
  • spim.fiji.plugin.Image_Fusion (implements ij.plugin.PlugIn)
  • sc.fiji.i5d.plugin.Image5D_Extensions (implements ij.macro.MacroExtension, ij.plugin.PlugIn)
  • sc.fiji.i5d.plugin.Image5D_Stack_to_RGB (implements ij.plugin.PlugIn)
  • sc.fiji.i5d.plugin.Image5D_to_Stack (implements ij.plugin.PlugIn)
  • adapter.ImageAdapter
    • adapter.Image5DAdapter
  • mpicbg.imagefeatures.ImageArrayConverter
  • mpi.fruitfly.general.ImageArrayConverter
  • edu.utexas.archipelago.image.ImageBlockDeblock (implements java.io.Serializable)
  • edu.utexas.archipelago.image.ImageBlockDeblock.BlockCallable (implements java.util.concurrent.Callable<V>)
  • ini.trakem2.persistence.ImageBytes
  • mpicbg.imglib.algorithm.math.ImageCalculator<S,T,U> (implements mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.MultiThreaded, mpicbg.imglib.algorithm.OutputAlgorithm<T>)
    • mpicbg.imglib.algorithm.math.ImageCalculatorInPlace<S,T>
  • util.ImageCalculatorRevised (implements ij.plugin.PlugIn)
  • mpicbg.stitching.ImageCollectionElement
  • levelsets.ij.ImageContainer
    • levelsets.ij.ImageProgressContainer
  • mpicbg.imglib.algorithm.math.ImageConverter<S,T> (implements mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.MultiThreaded, mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • org.imagearchive.lsm.reader.info.ImageDirectory
  • mpicbg.imglib.image.ImageFactory<T> (implements mpicbg.imglib.Factory)
  • ini.trakem2.io.ImageFileFilter (implements java.io.FilenameFilter)
  • ini.trakem2.io.ImageFileHeader
  • mpi.fruitfly.registration.ImageFilter
  • org.imagearchive.lsm.toolbox.gui.ImageFocusListener (implements java.awt.event.WindowFocusListener)
  • script.imglib.math.fn.ImageFunction (implements script.imglib.math.fn.IFunction)
  • fiji.plugin.trackmate.util.ImageHelper
  • mpicbg.stitching.fusion.ImageInterpolation<T>
  • ij3d.ImageJ_3D_Viewer (implements ij.plugin.PlugIn)
  • ij3d.ImageJ3DViewer (implements ij.plugin.PlugIn)
  • ini.trakem2.display.ImageJCommandListener (implements ij.CommandListener)
  • mpicbg.imglib.image.display.imagej.ImageJFunctions
  • ij.gui.ImageLayout (implements java.awt.LayoutManager)
    • sc.fiji.i5d.gui.Image5DLayout (implements java.awt.LayoutManager2)
  • fsalign.ImageListener (implements fsalign.FileListener, java.lang.Runnable)
    • fsalign.FSAlignListener
  • vib.app.ImageMetaData
  • vib.app.ImageMetaData.Material
  • vib.app.ImageMetaData.Transformation
  • mpicbg.imglib.io.ImageOpener (implements loci.common.StatusReporter)
  • graphcut.ImageOverlay (implements fiji.util.gui.OverlayedImageCanvas.Overlay)
  • siox.ImageOverlay (implements fiji.util.gui.OverlayedImageCanvas.Overlay)
  • trainableSegmentation.ImageOverlay (implements fiji.util.gui.OverlayedImageCanvas.Overlay)
  • ij.ImagePlus (implements java.lang.Cloneable, java.awt.image.ImageObserver, ij.measure.Measurements)
    • AmiraMeshReader_ (implements ij.plugin.PlugIn)
    • sc.fiji.io.Analyze_Reader (implements ij.plugin.PlugIn)
    • Biorad_Reader (implements ij.plugin.PlugIn)
    • sc.fiji.i5d.ChannelImagePlus
    • sc.fiji.io.DM3_Reader (implements ij.plugin.PlugIn)
    • ini.trakem2.display.FakeImagePlus
    • org.janelia.it.fiji.plugins.h5j.H5j_Reader (implements ij.plugin.PlugIn)
    • HandleExtraFileTypes (implements ij.plugin.PlugIn)
    • sc.fiji.io.Icns_Reader (implements ij.plugin.PlugIn)
    • sc.fiji.io.ICO_Reader (implements ij.plugin.PlugIn)
    • sc.fiji.i5d.Image5D
    • sc.fiji.io.IPLab_Reader (implements ij.plugin.PlugIn)
    • sc.fiji.io.Koala_Bin_Reader (implements ij.plugin.PlugIn)
    • leica.LeicaSPReader
      • leica.Leica_SP_Reader (implements ij.plugin.PlugIn)
    • LSM_Reader (implements ij.plugin.PlugIn)
    • sc.fiji.io.LSS16_Reader (implements ij.plugin.PlugIn)
    • sc.fiji.io.Nrrd_Reader (implements ij.plugin.PlugIn)
    • sc.fiji.io.Open_DAT_EMMENU (implements ij.plugin.PlugIn)
    • sc.fiji.io.Open_MRC_Leginon (implements ij.plugin.PlugIn)
    • ini.trakem2.imaging.PatchStack
    • sc.fiji.io.PDF_Viewer (implements ij.plugin.PlugIn)
    • sc.fiji.timelapse.ProfileStack
    • sc.fiji.io.SVG_Reader (implements ij.plugin.PlugIn)
    • sc.fiji.io.TorstenRaw_GZ_Reader (implements ij.plugin.PlugIn)
    • org.janelia.vaa3d.reader.Vaa3d_Reader (implements ij.plugin.PlugIn)
    • loci.plugins.util.VirtualImagePlus
  • mpicbg.imglib.image.ImagePlusAdapter
  • bdv.ij.export.imgloader.ImagePlusImgLoader<T> (implements mpicbg.spim.data.generic.sequence.TypedBasicImgLoader<T>)
  • bdv.ij.export.imgloader.ImagePlusImgLoader.SetupImgLoader<S> (implements mpicbg.spim.data.generic.sequence.BasicSetupImgLoader<T>)
  • bigwarp.loader.ImagePlusLoader (implements bigwarp.loader.Loader)
  • bigwarp.loader.ImagePlusLoader.ColorSettings
  • loci.plugins.in.ImagePlusReader (implements loci.common.StatusReporter)
  • spim.process.fusion.ImagePortion
  • ij.process.ImageProcessor (implements java.lang.Cloneable)
    • ij.process.FloatProcessor
      • ini.trakem2.imaging.FloatProcessorT2
    • loci.plugins.util.RecordedImageProcessor
  • loci.plugins.util.ImageProcessorSource (implements loci.formats.cache.ICacheSource)
  • ini.trakem2.io.ImageSaver
  • trainableSegmentation.ImageScience
  • ij.ImageStack
    • sc.fiji.i5d.I5DVirtualStack
    • mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay<T>
    • ini.trakem2.imaging.LayerStack
    • spimopener.SPIMStack
      • spimopener.SPIMRegularStack
      • spimopener.SPIMVirtualStack
    • ij.VirtualStack
      • loci.plugins.util.BFVirtualStack
      • mpicbg.imglib.image.display.imagej.ImageJVirtualStack<T>
      • ini.trakem2.imaging.LazyVirtualStack
    • video2.WritableVirtualStack
  • org.janelia.it.jacs.shared.ffmpeg.ImageStack
  • bdv.img.imagestack.ImageStackImageLoader<T,A> (implements mpicbg.spim.data.generic.sequence.BasicImgLoader, mpicbg.spim.data.generic.sequence.TypedBasicImgLoader<T>)
  • bdv.img.imagestack.ImageStackImageLoader.SetupImgLoader (implements mpicbg.spim.data.generic.sequence.BasicSetupImgLoader<T>)
  • net.imglib2.algorithm.math.ImageStatistics
  • mpicbg.imglib.algorithm.transformation.ImageTransform<T> (implements mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • bdv.img.imaris.Imaris
  • bdv.img.imaris.ImarisImageLoader<T,V,A> (implements bdv.ViewerImgLoader)
  • bdv.img.imaris.ImarisVolatileByteArrayLoader (implements bdv.img.cache.CacheArrayLoader<A>)
  • bdv.img.imaris.ImarisVolatileFloatArrayLoader (implements bdv.img.cache.CacheArrayLoader<A>)
  • bdv.img.imaris.ImarisVolatileShortArrayLoader (implements bdv.img.cache.CacheArrayLoader<A>)
  • script.imglib.ImgLib
  • mpicbg.imglib.wrapper.ImgLib1
  • mpicbg.imglib.wrapper.ImgLib2
  • fiji.expressionparser.function.ImgLibComparison
  • fiji.expressionparser.function.ImgLibLogical
  • fiji.expressionparser.ImgLibNumberFactory (implements org.nfunk.jep.type.NumberFactory)
  • mpicbg.spim.io.ImgLibSaver
  • fiji.expressionparser.ImgLibUtils
  • mpicbg.spim.data.generic.sequence.ImgLoaders
  • sc.fiji.snt.util.ImgUtils
  • Implicit_Interpolate_Binary (implements ij.plugin.filter.PlugInFilter)
  • Implicit_Interpolate_Binary.ImplicitFunction
  • Implicit_Interpolate_Binary.ImplicitSamples
  • loci.plugins.in.Importer
  • loci.plugins.in.ImporterPrompter (implements loci.common.StatusListener)
  • bdv.ij.ImportPlugIn (implements org.scijava.command.Command)
  • loci.plugins.in.ImportProcess (implements loci.common.StatusReporter)
  • sc.fiji.snt.util.ImpUtils
  • inference.Inference
    • inference.BinBoundariesComputation (implements inference.InferenceCaller)
      • inference.BinBoundariesInference (implements inference.InferenceCaller)
      • inference.BinClassificationInference (implements inference.InferenceCaller)
    • inference.DistributionInference (implements inference.InferenceCaller)
    • inference.ModelInference (implements inference.InferenceCaller)
  • org.janelia.thickness.inference.InferFromMatrix
  • org.janelia.thickness.inference.InferFromMatrix.ModelRegularization (implements org.janelia.thickness.inference.InferFromMatrix.Regularizer)
    • org.janelia.thickness.inference.InferFromMatrix.BorderRegularization
    • org.janelia.thickness.inference.InferFromMatrix.IdentityRegularization
  • org.janelia.thickness.inference.InferFromMatrix.NoRegularization (implements org.janelia.thickness.inference.InferFromMatrix.Regularizer)
  • trainableSegmentation.metrics.InformationStatistics
  • bdv.tools.InitializeViewerState
  • java.io.InputStream (implements java.io.Closeable)
    • java.io.FilterInputStream
      • java.io.BufferedInputStream
        • ini.trakem2.io.LoggingInputStream
      • org.janelia.vaa3d.reader.PbdInputStream
        • org.janelia.vaa3d.reader.Pbd16InputStream
        • org.janelia.vaa3d.reader.Pbd8InputStream
  • sc.fiji.snt.annotation.InsectBrainCompartment (implements sc.fiji.snt.annotation.BrainAnnotation)
  • sc.fiji.snt.io.InsectBrainLoader
  • sc.fiji.snt.io.InsectBrainLoader.NeuronInfo
  • sc.fiji.snt.annotation.InsectBrainUtils
  • video2.Insert_Stack (implements ij.plugin.filter.PlugInFilter)
  • ini.trakem2.display.inspect.InspectPatchTrianglesMode (implements ini.trakem2.display.Mode)
  • mpicbg.imglib.container.basictypecontainer.array.IntArray (implements mpicbg.imglib.container.basictypecontainer.array.ArrayDataAccess<A>, mpicbg.imglib.container.basictypecontainer.IntAccess)
    • mpicbg.imglib.wrapper.ExistingIntArrays
  • org.siox.util.IntArrayList
  • sc.fiji.coloc.algorithms.IntArraySorter
  • mpicbg.spim.data.sequence.IntegerPattern
  • mpicbg.imglib.function.IntegerTypeConverter<A,B> (implements mpicbg.imglib.function.Converter<A,B>)
  • ini.trakem2.imaging.IntegralHistogram2d
  • mpicbg.imglib.algorithm.integral.IntegralImage<R,T> (implements mpicbg.imglib.algorithm.OutputAlgorithm<T>)
    • mpicbg.imglib.algorithm.integral.IntegralImageDouble<R>
    • mpicbg.imglib.algorithm.integral.IntegralImageLong<R>
  • mpicbg.spim.segmentation.IntegralImage3d
  • ini.trakem2.persistence.IntegralImageMipMaps
  • Interactive_3D_Surface_Plot (implements java.awt.event.ItemListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, ij.plugin.PlugIn)
  • spim.fiji.plugin.Interactive_Remove_Detections (implements ij.plugin.PlugIn)
  • mpicbg.spim.segmentation.InteractiveDoG (implements ij.plugin.PlugIn)
  • mpicbg.spim.segmentation.InteractiveDoG.ApplyButtonListener (implements java.awt.event.ActionListener)
  • mpicbg.spim.segmentation.InteractiveDoG.EnableListener (implements java.awt.event.ItemListener)
  • mpicbg.spim.segmentation.InteractiveDoG.FinishedButtonListener (implements java.awt.event.ActionListener)
  • mpicbg.spim.segmentation.InteractiveDoG.ImagePlusListener (implements fiji.tool.SliceListener)
  • mpicbg.spim.segmentation.InteractiveDoG.MaxListener (implements java.awt.event.ItemListener)
  • mpicbg.spim.segmentation.InteractiveDoG.MinListener (implements java.awt.event.ItemListener)
  • mpicbg.spim.segmentation.InteractiveDoG.RoiListener (implements java.awt.event.MouseListener)
  • mpicbg.spim.segmentation.InteractiveDoG.Sigma2Listener (implements java.awt.event.AdjustmentListener)
  • mpicbg.spim.segmentation.InteractiveDoG.SigmaListener (implements java.awt.event.AdjustmentListener)
  • mpicbg.spim.segmentation.InteractiveDoG.ThresholdListener (implements java.awt.event.AdjustmentListener)
  • mpicbg.spim.segmentation.InteractiveIntegral (implements ij.plugin.PlugIn)
  • mpicbg.spim.segmentation.InteractiveIntegral.EnableListener (implements java.awt.event.ItemListener)
  • mpicbg.spim.segmentation.InteractiveIntegral.FinishButtonListener (implements java.awt.event.ActionListener)
  • mpicbg.spim.segmentation.InteractiveIntegral.ImagePlusListener (implements fiji.tool.SliceListener)
  • mpicbg.spim.segmentation.InteractiveIntegral.MaxListener (implements java.awt.event.ItemListener)
  • mpicbg.spim.segmentation.InteractiveIntegral.MinListener (implements java.awt.event.ItemListener)
  • mpicbg.spim.segmentation.InteractiveIntegral.Radius1Listener (implements java.awt.event.AdjustmentListener)
  • mpicbg.spim.segmentation.InteractiveIntegral.Radius2Listener (implements java.awt.event.AdjustmentListener)
  • mpicbg.spim.segmentation.InteractiveIntegral.ThresholdListener (implements java.awt.event.AdjustmentListener)
  • mpicbg.ij.InteractiveInvertibleCoordinateTransform<M> (implements ij.ImageListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, ij.plugin.PlugIn)
    • Transform_Affine
    • Transform_Perspective
    • Transform_RegularizedAffine
    • Transform_Rigid
    • Transform_Similarity
  • mpicbg.ij.InteractiveInvertibleCoordinateTransform.Tuple
  • mpicbg.ij.InteractiveMapping (implements ij.ImageListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, ij.plugin.PlugIn)
    • Transform_MovingLeastSquaresMesh
    • Transform_ThinPlateSpline
  • ij3d.gui.InteractiveMeshDecimation
  • spim.fiji.plugin.removedetections.InteractiveProjections
  • spim.fiji.plugin.removedetections.InteractiveProjections.FinishedButtonListener (implements java.awt.event.ActionListener)
  • spim.fiji.plugin.removedetections.InteractiveProjections.RemoveInsideROIButtonListener (implements java.awt.event.ActionListener)
  • spim.fiji.plugin.Interest_Point_Detection (implements ij.plugin.PlugIn)
  • spim.fiji.plugin.Interest_Point_Registration (implements ij.plugin.PlugIn)
  • spim.fiji.plugin.interestpointdetection.InterestPointDetection
    • spim.fiji.plugin.interestpointdetection.DifferenceOf
      • spim.fiji.plugin.interestpointdetection.DifferenceOfGaussian (implements spim.fiji.plugin.util.GenericDialogAppender)
      • spim.fiji.plugin.interestpointdetection.DifferenceOfMean
  • spim.fiji.spimdata.explorer.interestpoint.InterestPointExplorer<AS,X> (implements spim.fiji.spimdata.explorer.SelectedViewDescriptionListener<AS>)
  • spim.fiji.spimdata.interestpoints.InterestPointList
  • spim.fiji.spimdata.explorer.interestpoint.InterestPointOverlay (implements bdv.viewer.OverlayRenderer, bdv.viewer.TransformListener<A>)
  • spim.fiji.plugin.interestpointregistration.InterestPointRegistration
    • spim.process.interestpointregistration.centerofmass.CenterOfMass
    • spim.process.interestpointregistration.geometrichashing.GeometricHashing
    • spim.process.interestpointregistration.icp.IterativeClosestPoint
    • spim.process.interestpointregistration.geometricdescriptor.RGLDM
  • spim.fiji.spimdata.explorer.popup.InterestPointsExplorerPopup.MyActionListener (implements java.awt.event.ActionListener)
  • mpicbg.models.InterpolatedCoordinateTransform<A,B> (implements mpicbg.models.CoordinateTransform)
  • vib.InterpolatedImage
  • vib.InterpolatedImage.Iterator (implements java.util.Iterator<E>)
  • vib.InterpolatedImage.NearestNeighbourByte (implements vib.InterpolatedImage.Interpolate)
  • fiji.plugin.volumeviewer.Interpolation
  • mpicbg.imglib.interpolation.InterpolatorFactory<T> (implements mpicbg.imglib.Factory)
    • mpicbg.imglib.interpolation.dct.DCTInterpolatorFactory<T>
    • mpicbg.imglib.interpolation.lanczos.LanczosInterpolatorFactory<T>
    • mpicbg.imglib.interpolation.linear.LinearInterpolatorFactory<T>
    • mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolatorFactory<T>
  • mpicbg.imglib.interpolation.InterpolatorImpl<T> (implements mpicbg.imglib.interpolation.Interpolator<T>)
    • mpicbg.imglib.interpolation.dct.DCTInterpolator<T>
    • mpicbg.imglib.interpolation.lanczos.LanczosInterpolator<T>
    • mpicbg.imglib.interpolation.linear.LinearInterpolator<T>
      • mpicbg.imglib.interpolation.linear.LinearInterpolator1D<T>
      • mpicbg.imglib.interpolation.linear.LinearInterpolator2D<T>
      • mpicbg.imglib.interpolation.linear.LinearInterpolator2DRealType<T>
      • mpicbg.imglib.interpolation.linear.LinearInterpolator3D<T>
      • mpicbg.imglib.interpolation.linear.LinearInterpolator3DRealType<T>
    • mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator<T>
      • mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator1D<T> (implements mpicbg.imglib.interpolation.Interpolator1D<T>)
      • mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator2D<T> (implements mpicbg.imglib.interpolation.Interpolator2D<T>)
      • mpicbg.imglib.interpolation.nearestneighbor.NearestNeighborInterpolator3D<T> (implements mpicbg.imglib.interpolation.Interpolator3D<T>)
  • mpicbg.stitching.fusion.Interval
  • bdv.viewer.overlay.IntervalAndTransform (implements bdv.viewer.overlay.MultiBoxOverlay.IntervalAndTransform)
  • bdv.util.IntervalBoundingBox
  • bdv.tools.boundingbox.IntervalCorners
  • org.siox.util.IntHashMap
  • mpicbg.ij.integral.IntIntegralImage (implements mpicbg.ij.integral.IntegralImage)
  • mpicbg.models.InverseCoordinateTransformList<E> (implements mpicbg.models.InverseBoundable, mpicbg.models.TransformList<E>)
  • mpicbg.models.InverseCoordinateTransformMap2D (implements mpicbg.models.InverseCoordinateTransform)
  • mpicbg.imglib.algorithm.fft.InverseFourierTransform<T,S> (implements mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.MultiThreaded, mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • mpicbg.imglib.image.display.imagej.InverseTransformDescription<T>
  • mpicbg.ij.InverseTransformMapping<T> (implements mpicbg.ij.Mapping<T>)
    • mpicbg.panorama.HomogeneousMapping<T>
  • imglib.ops.operator.unary.Invert (implements imglib.ops.operator.UnaryOperator)
  • ini.trakem2.imaging.filters.Invert (implements ini.trakem2.imaging.filters.IFilter)
  • mpicbg.models.InvertibleCoordinateTransformList<E> (implements mpicbg.models.InvertibleBoundable, mpicbg.models.TransformList<E>)
    • mpicbg.trakem2.transform.InvertibleCoordinateTransformList<E> (implements mpicbg.trakem2.transform.InvertibleCoordinateTransform)
  • mpicbg.ij.InvertibleTransformMapping<T> (implements mpicbg.ij.InvertibleMapping<T>)
    • mpicbg.ij.TransformMeshMapping<T>
      • mpicbg.trakem2.transform.TransformMeshMappingWithMasks<T>
        • mpicbg.trakem2.transform.TransformMeshMapping
  • bigwarp.scripts.InvertWarp
  • bdv.util.InvokeOnEDT
  • mpicbg.spim.io.IOFunctions
  • fiji.plugin.trackmate.io.IOUtils
  • fiji.plugin.trackmate.action.ISBIChallengeExporter.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • IsoData_Classifier (implements ij.plugin.filter.PlugInFilter)
  • mpicbg.spim.fusion.IsolatedPixelWeightener<I>
    • mpicbg.spim.fusion.AverageContent
    • mpicbg.spim.fusion.EntropyFast
    • mpicbg.spim.fusion.GaussContent
  • spim.process.interestpointregistration.icp.IterativeClosestPointPairwise (implements java.util.concurrent.Callable<V>)
  • spim.process.interestpointregistration.icp.IterativeClosestPointParameters
  • bigwarp.source.JacobianDeterminantSource<T> (implements bdv.viewer.Source<T>)
  • math3d.JacobiDouble
  • math3d.JacobiFloat
  • fiji.plugin.trackmate.tracking.sparselap.costmatrix.JaqamanLinkingCostMatrixCreator<K,J> (implements fiji.plugin.trackmate.tracking.sparselap.costmatrix.CostMatrixCreator<K,J>)
  • fiji.plugin.trackmate.tracking.sparselap.costmatrix.JaqamanSegmentCostMatrixCreator (implements fiji.plugin.trackmate.tracking.sparselap.costmatrix.CostMatrixCreator<K,J>, net.imglib2.algorithm.MultiThreaded)
  • mpicbg.spim.mpicbg.Java3d
  • org.nfunk.jep.JEP
    • fiji.expressionparser.ImgLibParser<T>
  • fiji.JNI
  • jRenderer3D.JRenderer3D
  • util.Just_Certain_Labels (implements ij.plugin.PlugIn)
  • Kalman_Filter (implements ij.plugin.PlugIn)
  • fiji.plugin.trackmate.tracking.kalman.KalmanTracker (implements net.imglib2.algorithm.Benchmark, org.scijava.Cancelable, fiji.plugin.trackmate.tracking.SpotTracker)
  • fiji.plugin.trackmate.tracking.kalman.KalmanTrackerFactory (implements fiji.plugin.trackmate.tracking.SpotTrackerFactory)
  • KD_Cartoon (implements ij.plugin.filter.PlugInFilter)
  • fiji.util.KDTree<T>
  • mpicbg.imglib.algorithm.kdtree.KDTree<T>
  • sc.fiji.balloonSegmentation.utils.Kinematics
  • KLT
  • trainableSegmentation.filters.Kuwahara (implements ij.plugin.filter.PlugInFilter)
  • Kuwahara_Filter (implements ij.plugin.filter.PlugInFilter)
  • Kuwahara_LinearStructure_Filter_v3 (implements ij.plugin.filter.PlugInFilter)
  • sc.fiji.timelapse.KymographMouseListener (implements java.awt.event.MouseMotionListener, java.awt.event.WindowListener)
  • fiji.plugin.trackmate.detection.LabeImageDetectorFactory<T> (implements fiji.plugin.trackmate.detection.SpotDetectorFactory<T>)
  • oldsegmenters.LabelBinaryOps (implements ij.plugin.filter.PlugInFilter)
  • oldsegmenters.LabelBrush_ (implements ij.plugin.PlugIn)
  • fiji.plugin.trackmate.detection.LabelImageDetector<T> (implements fiji.plugin.trackmate.detection.SpotDetector<T>)
  • fiji.plugin.trackmate.action.LabelImgExporter.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • oldsegmenters.LabelInterpolator_ (implements ij.plugin.PlugIn)
  • oldsegmenters.LabelThresholder_ (implements ij.plugin.filter.PlugInFilter)
  • bigwarp.landmarks.LandmarkGridGenerator
  • bdv.gui.LandmarkKeyboardProcessor (implements java.awt.KeyEventPostProcessor)
  • fiji.plugin.trackmate.tracking.sparselap.linker.LAPJV (implements net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.OutputAlgorithm<F>)
  • process3d.Laplace_ (implements ij.plugin.filter.PlugInFilter)
  • mpicbg.spim.registration.bead.laplace.LaPlaceFunctions
  • fiji.plugin.trackmate.tracking.LAPTrackerFactory (implements fiji.plugin.trackmate.tracking.SpotTrackerFactory)
    • fiji.plugin.trackmate.tracking.sparselap.SparseLAPTrackerFactory
      • fiji.plugin.trackmate.tracking.sparselap.SimpleSparseLAPTrackerFactory
  • fiji.plugin.trackmate.tracking.LAPUtils
  • org.imagearchive.lsm.toolbox.info.scaninfo.Laser
  • plugin.Lasso
  • ini.trakem2.display.Layer.DoMoveDisplayable (implements ini.trakem2.display.DoStep)
  • edu.utexas.clm.archipelago.ijsupport.bottle.LayerBottle (implements edu.utexas.clm.archipelago.network.translation.Bottle<A>)
  • edu.utexas.clm.archipelago.ijsupport.bottle.LayerBottler (implements edu.utexas.clm.archipelago.network.translation.Bottler<A>)
  • ini.trakem2.display.LayerSet.DoChangeTrees (implements ini.trakem2.display.DoStep)
  • ini.trakem2.display.LayerSet.DoMoveZDisplayable (implements ini.trakem2.display.DoStep)
  • ini.trakem2.display.LayerSet.LayerBucket
  • org.janelia.thickness.trakem2.LayerZPosition (implements ini.trakem2.plugin.TPlugIn)
  • sc.fiji.snt.filter.Lazy
  • org.janelia.thickness.inference.visitor.LazyVisitor (implements org.janelia.thickness.inference.visitor.Visitor)
  • mpicbg.spim.data.legacy.LegacyBasicImgLoaderWrapper<T,I> (implements mpicbg.spim.data.generic.sequence.BasicImgLoader)
    • bdv.ij.export.imgloader.StackImageLoader
    • bdv.ij.export.tiles.TileImgLoader
  • mpicbg.spim.data.legacy.LegacyBasicImgLoaderWrapper.SetupImgLoaderWrapper (implements mpicbg.spim.data.generic.sequence.BasicSetupImgLoader<T>)
  • mpicbg.spim.data.legacy.LegacyImgLoaderWrapper<T,I> (implements mpicbg.spim.data.sequence.ImgLoader)
    • spim.fiji.spimdata.imgloaders.DHMImgLoader
    • spim.fiji.spimdata.imgloaders.LightSheetZ1ImgLoader
    • spim.fiji.spimdata.imgloaders.MicroManagerImgLoader
    • spim.fiji.spimdata.imgloaders.SlideBook6ImgLoader
    • spim.fiji.spimdata.imgloaders.StackImgLoader<I>
      • spim.fiji.spimdata.imgloaders.StackImgLoaderIJ
      • spim.fiji.spimdata.imgloaders.StackImgLoaderLOCI
  • mpicbg.spim.data.legacy.LegacyImgLoaderWrapper.SetupImgLoaderWrapper (implements mpicbg.spim.data.sequence.SetupImgLoader<T>)
  • bdv.ij.export.imgloader.LegacyStackImageLoader (implements mpicbg.spim.data.legacy.LegacyBasicImgLoader<T>)
  • bdv.ij.export.tiles.LegacyTileImgLoader (implements mpicbg.spim.data.legacy.LegacyBasicImgLoader<T>)
  • bdv.spimdata.legacy.LegacyViewerImgLoaderExtWrapper<T,V,I> (implements mpicbg.spim.data.sequence.ImgLoader, bdv.ViewerImgLoader)
  • bdv.spimdata.legacy.LegacyViewerImgLoaderExtWrapper.SetupImgLoaderWrapper (implements mpicbg.spim.data.sequence.SetupImgLoader<T>, bdv.ViewerSetupImgLoader<T,V>)
  • bdv.spimdata.legacy.LegacyViewerImgLoaderWrapper<T,V,I> (implements bdv.ViewerImgLoader)
  • bdv.spimdata.legacy.LegacyViewerImgLoaderWrapper.SetupImgLoaderWrapper (implements bdv.ViewerSetupImgLoader<T,V>)
  • leica.Leica_SP_Writer (implements ij.plugin.filter.PlugInFilter)
  • levelsets.ij.LevelSet (implements ij.plugin.PlugIn)
  • levelsets.algorithm.LevelSetFactory
  • levelsets.algorithm.LevelSetFactory.LevelSetDef
  • mpicbg.imglib.algorithm.peak.LevenbergMarquardtSolver
  • fiji.util.Levenshtein
  • loci.plugins.util.LibraryChecker
  • loci.plugins.config.LibraryEntry (implements java.lang.Comparable<T>)
  • loci.plugins.config.LIFWidgets (implements loci.plugins.config.IFormatWidgets, java.awt.event.ItemListener)
  • spim.fiji.datasetmanager.LightSheetZ1 (implements spim.fiji.datasetmanager.MultiViewDatasetDefinition)
  • spim.fiji.datasetmanager.LightSheetZ1MetaData
  • util.Limits
  • math3d.Line
  • jRenderer3D.Line3D
  • lineage.LineageClassifier
  • fiji.drawing.Linear_Gradient (implements ij.plugin.filter.PlugInFilter)
  • mpicbg.pointdescriptor.similarity.LinearDistance (implements mpicbg.pointdescriptor.similarity.SimilarityMeasure)
  • org.janelia.intensity.LinearIntensityMap<T>
  • sc.fiji.timelapse.LinearRegression
  • pal.math.LineFunction (implements pal.math.UnivariateFunction)
  • trainableSegmentation.filters.Lipschitz_ (implements ij.plugin.filter.PlugInFilter)
  • org.imagearchive.lsm.toolbox.gui.ListBoxImage
  • selection.ListListener (implements java.awt.event.ItemListener)
  • sc.fiji.snt.tracing.image.ListSearchImage<V> (implements sc.fiji.snt.tracing.image.SearchImage<V>)
  • org.janelia.thickness.inference.visitor.ListVisitor (implements org.janelia.thickness.inference.visitor.Visitor)
  • QuickPALM.Load_particles_tableFromImg (implements ij.plugin.PlugIn)
  • siox.Load_Segmentation (implements ij.plugin.PlugIn)
  • ini.trakem2.persistence.Loader
    • ini.trakem2.persistence.DBLoader
    • ini.trakem2.persistence.FSLoader
  • ini.trakem2.persistence.Loader.ImageLoadingLock
  • selection.LoadListener (implements java.awt.event.ActionListener)
  • sc.fiji.localThickness.Local_Thickness_Driver (implements ij.plugin.filter.PlugInFilter)
  • sc.fiji.localThickness.Local_Thickness_Parallel (implements ij.plugin.filter.PlugInFilter)
  • vib.Local_Threshold (implements ij.plugin.filter.PlugInFilter)
  • mmorpho.LocalHistogram (implements mmorpho.Constants)
  • mpicbg.imglib.labeling.LocalizableLabelingCursor<T> (implements mpicbg.imglib.cursor.LocalizableCursor<T>)
    • mpicbg.imglib.labeling.LocalizableLabelingPerimeterCursor<T>
  • mpicbg.imglib.algorithm.math.LocalizablePoint (implements mpicbg.imglib.cursor.Localizable)
  • spim.process.interestpointdetection.Localization
  • mpicbg.imglib.cursor.special.LocalNeighborhoodCursorFactory
  • vib.LocalRigidRegistration_ (implements ij.plugin.filter.PlugInFilter)
  • sc.fiji.localThickness.LocalThicknessWrapper (implements ij.plugin.filter.PlugInFilter)
  • mpicbg.imglib.io.LOCI
  • loci.plugins.config.LociConfig (implements ij.plugin.PlugIn)
  • loci.plugins.LociExporter (implements ij.plugin.filter.PlugInFilter)
  • loci.plugins.LociImporter (implements ij.plugin.PlugIn)
  • loci.plugins.config.LociInstaller (implements ij.plugin.PlugIn)
  • loci.plugins.util.LociPrefs
  • ini.trakem2.utils.Lock
  • stitching.utils.Log
  • imglib.ops.operator.unary.Log (implements imglib.ops.operator.UnaryOperator)
  • fiji.plugin.trackmate.detection.LogDetector<T> (implements net.imglib2.algorithm.MultiThreaded, fiji.plugin.trackmate.detection.SpotDetector<T>)
    • fiji.plugin.trackmate.detection.DogDetector<T>
  • fiji.plugin.trackmate.detection.LogDetectorFactory<T> (implements fiji.plugin.trackmate.detection.SpotDetectorFactory<T>)
    • fiji.plugin.trackmate.detection.DogDetectorFactory<T>
  • inference.LogFuncs
  • sc.fiji.snt.util.Logger
  • sc.fiji.timelapse.LOI_Interpolator (implements ij.plugin.filter.PlugInFilter)
  • sc.fiji.timelapse.LOI_Interpolator.SliderListener (implements java.awt.event.AdjustmentListener)
  • mpicbg.imglib.container.basictypecontainer.array.LongArray (implements mpicbg.imglib.container.basictypecontainer.array.ArrayDataAccess<A>, mpicbg.imglib.container.basictypecontainer.LongAccess)
    • mpicbg.imglib.wrapper.ExistingLongArrays
  • mpicbg.ij.integral.LongIntegralImage (implements mpicbg.ij.integral.IntegralImage)
  • mpicbg.ij.integral.LongRGBIntegralImage (implements mpicbg.ij.integral.IntegralImage)
  • fiji.plugin.volumeviewer.LookupTable
  • mpicbg.spim.postprocessing.deconvolution2.LRFFT
  • mpicbg.spim.postprocessing.deconvolution2.LRFFTThreads
  • mpicbg.spim.postprocessing.deconvolution2.LRInput
  • LSM_Toolbox (implements ij.macro.MacroExtension, ij.plugin.PlugIn)
  • sc.fiji.io.LSS16_Writer (implements ij.plugin.PlugIn)
  • sc.fiji.snt.util.LSystemsTree (implements ij.plugin.PlugIn)
  • mpicbg.spim.postprocessing.deconvolution.LucyRichardsonFFT
  • mpicbg.spim.postprocessing.deconvolution.LucyRichardsonMultiViewDeconvolution
  • loci.plugins.util.LuraWave
  • ini.trakem2.imaging.filters.LUTBlue (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.imaging.filters.LUTCustom (implements ini.trakem2.imaging.filters.IFilter)
    • ini.trakem2.imaging.filters.LUTOrange
  • ini.trakem2.imaging.filters.LUTCyan (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.imaging.filters.LUTGreen (implements ini.trakem2.imaging.filters.IFilter)
  • org.imagearchive.lsm.toolbox.info.LUTInfo
  • ini.trakem2.imaging.filters.LUTMagenta (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.imaging.filters.LUTRed (implements ini.trakem2.imaging.filters.IFilter)
  • org.janelia.thickness.inference.visitor.LUTVisitor.DoubleArrayIterable (implements java.lang.Iterable<T>)
  • ini.trakem2.imaging.filters.LUTYellow (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.utils.M
  • pal.math.MachineAccuracy
  • loci.plugins.macro.MacroFunctions (implements ij.macro.MacroExtension, ij.plugin.PlugIn)
    • loci.plugins.macro.LociFunctions
  • sc.fiji.i5d.Main
  • sc.fiji.i5d.plugin.Make_Montage (implements ij.plugin.PlugIn)
  • video2.Make_Transition (implements ij.plugin.filter.PlugInFilter)
  • sc.fiji.coloc.algorithms.MandersColocalization.MandersResults
  • sc.fiji.coloc.algorithms.MandersColocalization.SplitCoeffAccumulator
  • mpicbg.pointdescriptor.similarity.ManhattanDistance (implements mpicbg.pointdescriptor.similarity.SimilarityMeasure)
  • plugin.Manual_Landmark_Selection (implements ij.plugin.PlugIn)
  • ini.trakem2.display.ManualAlignMode (implements ini.trakem2.display.Mode)
  • ini.trakem2.display.ManualAlignMode.Landmarks
  • fiji.plugin.trackmate.detection.ManualDetectorFactory<T> (implements fiji.plugin.trackmate.detection.SpotDetectorFactory<T>)
  • fiji.plugin.trackmate.features.manual.ManualEdgeColorAnalyzer (implements fiji.plugin.trackmate.features.edges.EdgeAnalyzer)
  • fiji.plugin.trackmate.visualization.ManualEdgeColorGenerator (implements fiji.plugin.trackmate.visualization.TrackColorGenerator)
  • fiji.plugin.trackmate.visualization.ManualEdgePerSpotColorGenerator (implements fiji.plugin.trackmate.visualization.TrackColorGenerator)
  • bdv.tools.transformation.ManualSourceTransforms
  • fiji.plugin.trackmate.features.manual.ManualSpotColorAnalyzerFactory<T> (implements fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>)
  • fiji.plugin.trackmate.visualization.ManualSpotColorGenerator (implements fiji.plugin.trackmate.visualization.FeatureColorGenerator<K>)
  • fiji.plugin.trackmate.visualization.ManualSpotPerEdgeColorGenerator (implements fiji.plugin.trackmate.visualization.FeatureColorGenerator<K>)
  • fiji.plugin.trackmate.tracking.ManualTrackerFactory (implements fiji.plugin.trackmate.tracking.SpotTrackerFactory)
  • bdv.tools.transformation.ManualTransformation
  • bdv.tools.transformation.ManualTransformationEditor (implements bdv.viewer.TransformListener<A>)
  • inference.MAPInference
  • sc.fiji.snt.tracing.image.MapSearchImage<V> (implements sc.fiji.snt.tracing.image.SearchImage<V>)
  • org.imagearchive.lsm.toolbox.info.scaninfo.Marker
  • view5d.MarkerLists
  • bunwarpj.Mask
  • util.Mask_Of_Nearby_Points (implements ij.plugin.PlugIn)
  • sc.fiji.coloc.gadgets.MaskFactory
  • net.imglib2.predicate.MaskPredicate (implements net.imglib2.predicate.Predicate<T>)
  • sc.fiji.localThickness.MaskThicknessMapWithOriginal
  • fiji.plugin.trackmate.detection.MaskUtils
  • org.imagearchive.lsm.toolbox.MasterModel
  • selection.Match
  • process.Matching
  • process.Matching.PeakSort (implements java.lang.Comparable<T>)
  • org.janelia.intensity.MatchIntensities (implements ini.trakem2.plugin.TPlugIn)
  • spim.process.interestpointregistration.MatchPointList
  • mpicbg.imglib.algorithm.math.MathLib
  • bunwarpj.MathTools
  • pal.math.MathUtils
  • spim.vecmath.Matrix3d (implements java.lang.Cloneable, java.io.Serializable)
  • spim.vecmath.Matrix3f (implements java.lang.Cloneable, java.io.Serializable)
  • mpicbg.util.Matrix3x3 (implements java.io.Serializable)
  • spim.vecmath.Matrix4d (implements java.lang.Cloneable, java.io.Serializable)
  • spim.vecmath.Matrix4f (implements java.lang.Cloneable, java.io.Serializable)
  • org.janelia.utility.MatrixStripConversion
  • imglib.ops.operator.binary.Max (implements imglib.ops.operator.BinaryOperator)
  • imglib.ops.operator.unary.Max (implements imglib.ops.operator.UnaryOperator)
  • spim.fiji.plugin.Max_Project (implements ij.plugin.PlugIn)
  • vib.MaxEntHistogram
  • vib.MaxEntQuantization_ (implements ij.plugin.filter.PlugInFilter)
  • process3d.Maximum_ (implements ij.plugin.filter.PlugInFilter)
  • spimopener.MaximumProjector (implements spimopener.Projector)
  • mpicbg.stitching.fusion.MaxPixelFusion (implements mpicbg.stitching.fusion.PixelFusion)
    • mpicbg.stitching.fusion.MaxPixelFusionIgnoreZero
  • mpicbg.imglib.algorithm.projection.MaxProjection<T> (implements mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.MultiThreaded, mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • spim.fiji.spimdata.explorer.popup.MaxProjectPopup.MyActionListener (implements java.awt.event.ActionListener)
  • MC_Test (implements ij.plugin.PlugIn)
  • marchingcubes.MCCube
  • ini.trakem2.utils.MCCube
  • marchingcubes.MCTriangulator (implements isosurface.Triangulator)
  • ini.trakem2.utils.MCTriangulator (implements isosurface.Triangulator)
  • mpicbg.ij.plugin.Mean (implements ij.gui.DialogListener, ij.plugin.filter.ExtendedPlugInFilter)
  • mpicbg.ij.integral.Mean
  • process3d.Median_ (implements ij.plugin.filter.PlugInFilter)
  • levelsets.filter.MedianFilter (implements levelsets.filter.Filter)
  • mpicbg.stitching.fusion.MedianPixelFusion (implements mpicbg.stitching.fusion.PixelFusion)
    • mpicbg.stitching.fusion.MedianPixelFusionIgnoreZero
  • fiji.MediaWikiClient
    • fiji.GraphicalMediaWikiClient
  • Menu_Font (implements ij.plugin.PlugIn)
  • fiji.util.MenuItemDiverter (implements java.awt.event.KeyListener, ij.plugin.PlugIn, java.awt.event.WindowFocusListener)
    • fiji.help.Context_Help
  • fiji.util.MenuItemHelper
  • spim.fiji.plugin.Merge_Cluster_Jobs (implements ij.plugin.PlugIn)
  • spim.fiji.plugin.cluster.MergeClusterJobs
  • bdv.spimdata.tools.MergeExample
  • fiji.plugin.trackmate.action.MergeFileAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • bdv.spimdata.tools.MergePartitionList
  • ini.trakem2.utils.Merger
  • bdv.spimdata.tools.MergeTools
  • pal.math.MersenneTwisterFast (implements java.io.Serializable)
  • isosurface.MeshEditor
  • util.Meshes_From_Label_File (implements ij.plugin.PlugIn)
  • isosurface.MeshExporter
  • customnode.MeshLoader
  • customnode.MeshMaker
    • customnode.Mesh_Maker (implements ij.plugin.PlugIn)
      • ij3d.Mesh_Maker
    • ij3d.MeshMaker
  • isosurface.MeshProperties
  • bdv.viewer.animate.MessageOverlayAnimator (implements bdv.viewer.animate.OverlayAnimator)
  • edu.utexas.clm.archipelago.network.MessageXC
  • sc.fiji.io.MetaImage_CWriter (implements ij.plugin.PlugIn)
  • sc.fiji.io.MetaImage_Reader (implements ij.plugin.PlugIn)
  • sc.fiji.io.MetaImage_Writer (implements ij.plugin.PlugIn)
  • trainableSegmentation.metrics.Metrics
    • trainableSegmentation.metrics.AdjustedRandError
    • trainableSegmentation.metrics.PixelError
    • trainableSegmentation.metrics.RandError
    • trainableSegmentation.metrics.VariationOfInformation
    • trainableSegmentation.metrics.WarpingError
  • spim.fiji.datasetmanager.MicroManager (implements spim.fiji.datasetmanager.MultiViewDatasetDefinition)
  • imglib.ops.operator.binary.Min (implements imglib.ops.operator.BinaryOperator)
  • imglib.ops.operator.unary.Min (implements imglib.ops.operator.UnaryOperator)
  • spim.process.fusion.boundingbox.automatic.MinFilterThreshold
  • process3d.Minimum_ (implements ij.plugin.filter.PlugInFilter)
  • spimopener.MinimumProjector (implements spimopener.Projector)
  • process3d.MinMaxMedian
  • mpicbg.stitching.fusion.MinPixelFusion (implements mpicbg.stitching.fusion.PixelFusion)
    • mpicbg.stitching.fusion.MinPixelFusionIgnoreZero
  • ini.trakem2.display.MipMapImage
  • bdv.img.hdf5.MipmapInfo
    • bdv.export.ExportMipmapInfo
  • bdv.viewer.render.MipmapOrdering.Level
  • bdv.viewer.render.MipmapOrdering.MipmapHints
  • bdv.viewer.render.MipmapOrdering.PrefetchOrderComparator (implements java.util.Comparator<T>)
  • bdv.viewer.render.MipmapOrdering.RenderOrderComparator (implements java.util.Comparator<T>)
  • bdv.util.MipmapTransforms
  • spim.process.fusion.deconvolution.Mirror
  • mpicbg.imglib.algorithm.mirror.MirrorImage<T> (implements mpicbg.imglib.algorithm.Algorithm, mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.MultiThreaded)
  • bunwarpj.MiscTools
  • mpicbg.spim.data.sequence.MissingViews
  • fiji.plugin.trackmate.action.fit.MLGaussian2DFixedRadiusEstimator (implements net.imglib2.algorithm.localization.StartPointEstimator)
  • fiji.plugin.trackmate.action.fit.MLGaussian3DEstimator (implements net.imglib2.algorithm.localization.StartPointEstimator)
  • fiji.plugin.trackmate.action.fit.MLGaussian3DFixedRadiusEstimator (implements net.imglib2.algorithm.localization.StartPointEstimator)
  • stitching.model.Model (implements stitching.model.CoordinateTransform)
    • stitching.model.InvertibleModel (implements stitching.model.InvertibleCoordinateTransform)
      • stitching.model.TranslationModel2D
      • stitching.model.TranslationModel3D
  • fiji.plugin.trackmate.Model
  • mpicbg.spim.registration.detection.descriptor.ModelBased3d<T> (implements mpicbg.spim.registration.detection.descriptor.CorrespondenceExtraction<T>)
  • fiji.plugin.trackmate.features.ModelDataset.DataItem
  • util.ModelessQuestions.QuestionComponent
  • fiji.plugin.trackmate.features.ModelFeatureUpdater (implements fiji.plugin.trackmate.ModelChangeListener, net.imglib2.algorithm.MultiThreaded)
  • spim.fiji.plugin.apply.ModelLink
  • fiji.plugin.trackmate.util.ModelTools
  • bigwarp.transforms.ModelTransformSolver (implements bigwarp.transforms.TransformSolver<T>)
  • vib.app.module.Module
    • vib.app.module.AverageBrain
    • vib.app.module.CenterTransformation
    • vib.app.module.EndModule
    • vib.app.module.GreyTransformation
    • vib.app.module.Label
    • vib.app.module.LabelCenterTransformation
    • vib.app.module.LabelDiffusionTransformation
    • vib.app.module.Resample
    • vib.app.module.ResampleLabels
    • vib.app.module.Show
    • vib.app.module.SplitChannels
    • vib.app.module.TissueStatistics
    • vib.app.module.TransformImages
  • ini.trakem2.utils.Montage
  • MOPS_ExtractPointRoi (implements ij.ImageListener, java.awt.event.KeyListener, java.awt.event.MouseListener, ij.plugin.PlugIn)
  • mpicbg.imglib.algorithm.roi.MorphClose<T> (implements mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • levelsets.filter.MorphologicalOperator (implements levelsets.filter.Filter)
    • levelsets.filter.Dilatation
    • levelsets.filter.Erosion
    • levelsets.filter.GreyValueErosion
    • levelsets.filter.UnsetPixel
  • mpicbg.imglib.algorithm.roi.MorphOpen<T> (implements mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • mmorpho.MorphoProcessor (implements mmorpho.Constants)
  • java.awt.event.MouseAdapter (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener)
    • fiji.tool.AbstractTool.ToolbarMouseAdapter
  • sc.fiji.snt.io.MouseLightLoader
  • sc.fiji.snt.io.MouseLightQuerier
  • fiji.plugin.timelapsedisplay.MouseListenerTimelapse (implements org.jfree.chart.ChartMouseListener)
  • spim.process.interestpointregistration.registrationstatistics.MouseListenerTimelapse (implements org.jfree.chart.ChartMouseListener)
  • spim.fiji.plugin.thinout.MouseListenerValue (implements org.jfree.chart.ChartMouseListener)
  • video2.Move_Roi (implements ij.plugin.filter.PlugInFilter)
  • Moving_Least_Squares (implements ij.plugin.PlugIn)
  • bdv.util.MovingAverage
  • mpicbg.ij.plugin.MSEBlockFlow (implements ij.plugin.PlugIn)
  • mpicbg.ij.plugin.MSEGaussianFlow (implements java.awt.event.KeyListener, ij.plugin.PlugIn)
  • MTrack2_ (implements ij.measure.Measurements, ij.plugin.filter.PlugInFilter)
  • MTrack2_.particle
  • fiji.plugin.Multi_View_Deconvolution (implements ij.plugin.PlugIn)
  • fiji.plugin.Multi_View_Fusion (implements ij.plugin.PlugIn)
  • bdv.viewer.overlay.MultiBoxOverlay
    • bdv.viewer.MultiBoxOverlay2d
  • bdv.viewer.overlay.MultiBoxOverlayRenderer
  • sc.fiji.snt.hyperpanes.MultiDThreePanes (implements sc.fiji.snt.hyperpanes.PaneOwner)
    • sc.fiji.snt.SNT (implements sc.fiji.snt.HessianGenerationCallback, sc.fiji.snt.SearchProgressCallback)
  • imglib.ops.operation.MultiImageIterator<T>
  • spim.fiji.spimdata.imgloaders.MultipageTiffReader
  • spim.fiji.spimdata.imgloaders.MultipageTiffReader.IFDData
  • spim.fiji.spimdata.imgloaders.MultipageTiffReader.IFDEntry
  • MultipleImageProcessor (implements ij.plugin.PlugIn)
  • sc.fiji.multiKymograph.MultipleKymograph_ (implements ij.plugin.PlugIn)
  • sc.fiji.multiKymograph.MultipleOverlay_ (implements ij.plugin.PlugIn)
  • imglib.ops.operator.binary.Multiply (implements imglib.ops.operator.BinaryOperator)
  • ini.trakem2.display.graphics.MultiplyARGBComposite (implements java.awt.Composite)
  • imglib.ops.operator.unary.MultiplyByConstant (implements imglib.ops.operator.UnaryOperator)
  • bdv.viewer.render.MultiResolutionRenderer
  • org.janelia.saalfeldlab.n5.metadata.MultiscaleMetadata<T> (implements org.janelia.saalfeldlab.n5.metadata.PhysicalMetadata)
    • bigwarp.metadata.BwN5CosemMultiScaleMetadata (implements org.janelia.saalfeldlab.n5.metadata.N5GroupParser<T>, org.janelia.saalfeldlab.n5.metadata.N5Metadata, org.janelia.saalfeldlab.n5.metadata.PhysicalMetadata)
  • net.imglib2.algorithm.MultiThreadedAlgorithm (implements net.imglib2.algorithm.Algorithm, net.imglib2.algorithm.MultiThreaded)
    • net.imglib2.algorithm.MultiThreadedBenchmarkAlgorithm (implements net.imglib2.algorithm.Benchmark)
      • fiji.plugin.trackmate.features.EdgeFeatureCalculator (implements org.scijava.Cancelable)
      • fiji.plugin.trackmate.tracking.kdtree.NearestNeighborTracker (implements org.scijava.Cancelable, fiji.plugin.trackmate.tracking.SpotTracker)
      • fiji.plugin.trackmate.tracking.overlap.OverlapTracker (implements org.scijava.Cancelable, fiji.plugin.trackmate.tracking.SpotTracker)
      • fiji.plugin.trackmate.tracking.sparselap.SparseLAPFrameToFrameTracker (implements org.scijava.Cancelable, fiji.plugin.trackmate.tracking.SpotTracker)
      • fiji.plugin.trackmate.tracking.sparselap.SparseLAPTracker (implements org.scijava.Cancelable, fiji.plugin.trackmate.tracking.SpotTracker)
      • fiji.plugin.trackmate.features.SpotFeatureCalculator (implements org.scijava.Cancelable)
      • fiji.plugin.trackmate.action.SpotGaussianFitter
      • fiji.plugin.trackmate.features.TrackFeatureCalculator (implements org.scijava.Cancelable)
  • mpicbg.imglib.algorithm.MultiThreadedAlgorithm (implements mpicbg.imglib.algorithm.Algorithm, mpicbg.imglib.algorithm.MultiThreaded)
    • mpicbg.imglib.algorithm.MultiThreadedBenchmarkAlgorithm (implements mpicbg.imglib.algorithm.Benchmark)
      • mpicbg.imglib.algorithm.pde.AnisotropicDiffusion<T>
  • mpi.fruitfly.general.MultiThreading
  • pal.math.MultivariateMinimum
    • pal.math.ConjugateDirectionSearch
    • pal.math.ConjugateGradientSearch
    • pal.math.DifferentialEvolution
    • pal.math.GeneralizedDEOptimizer
    • pal.math.OrthogonalSearch
    • pal.math.StochasticOSearch
  • sc.fiji.snt.viewer.MultiViewer2D
  • distance.MutualInformation (implements distance.PixelPairs)
  • spim.process.fusion.deconvolution.MVDeconFFT
  • spim.process.fusion.deconvolution.MVDeconFFTThreads
  • spim.process.fusion.deconvolution.MVDeconInput
  • spim.process.fusion.deconvolution.MVDeconvolution
  • com.mxgraph.canvas.mxBasicCanvas (implements com.mxgraph.canvas.mxICanvas)
    • com.mxgraph.canvas.mxSvgCanvas
      • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeSvgCanvas
  • com.mxgraph.shape.mxBasicShape (implements com.mxgraph.shape.mxIShape)
    • com.mxgraph.shape.mxRectangleShape
      • fiji.plugin.trackmate.visualization.trackscheme.mxScaledLabelShape
  • com.mxgraph.util.mxEventSource
    • com.mxgraph.view.mxGraph
      • fiji.plugin.trackmate.visualization.trackscheme.JGraphXAdapter (implements org.jgrapht.event.GraphListener<V,E>)
      • org.jgrapht.ext.JGraphXAdapter<V,E> (implements org.jgrapht.event.GraphListener<V,E>)
        • sc.fiji.snt.viewer.geditor.SNTGraphAdapter<V,E>
          • sc.fiji.snt.viewer.geditor.AnnotationGraphAdapter
          • sc.fiji.snt.viewer.geditor.SNTPseudographAdapter<V,E>
          • sc.fiji.snt.viewer.geditor.TreeGraphAdapter
  • com.mxgraph.layout.mxGraphLayout (implements com.mxgraph.layout.mxIGraphLayout)
    • com.mxgraph.layout.mxCircleLayout
      • sc.fiji.snt.viewer.geditor.mxCircleLayoutGrouped
      • sc.fiji.snt.viewer.geditor.mxCircleLayoutScaled
      • sc.fiji.snt.viewer.geditor.mxCircleLayoutSorted
    • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeGraphLayout (implements net.imglib2.algorithm.Benchmark)
  • view5d.My3DData
  • bdv.img.n5.N5ImageLoader (implements mpicbg.spim.data.sequence.MultiResolutionImgLoader, bdv.ViewerImgLoader)
  • vib.NaiveResampler
    • vib.Resample_ (implements ij.plugin.filter.PlugInFilter)
  • vib.NaiveResampler.Averager
  • vib.NaiveResampler.IntAverager
  • vib.NaiveResampler.MaxLikelihood
  • vib.NaiveResampler.MinEntropy
  • sc.fiji.coloc.results.NamedContainer<T>
  • landmarks.NamedPointSet
  • landmarks.NamedPointWorld
  • spim.fiji.spimdata.NamePattern
  • landmarks.NamePoints (implements landmarks.FineTuneProgressListener)
    • landmarks.Name_Points (implements ij.plugin.PlugIn)
  • spim.process.cuda.NativeLibraryTools
  • loci.plugins.config.ND2Widgets (implements loci.plugins.config.IFormatWidgets, java.awt.event.ItemListener)
  • fiji.plugin.trackmate.tracking.kdtree.NearestNeighborFlagSearchOnKDTree<T> (implements net.imglib2.neighborsearch.NearestNeighborSearch<T>)
  • fiji.util.NearestNeighborSearch<T>
  • mpicbg.imglib.algorithm.kdtree.NearestNeighborSearch<T>
  • fiji.plugin.trackmate.tracking.kdtree.NearestNeighborTrackerFactory (implements fiji.plugin.trackmate.tracking.SpotTrackerFactory)
  • sc.fiji.snt.NearPoint (implements java.lang.Comparable<T>)
  • org.jgrapht.alg.util.NeighborCache<V,E> (implements org.jgrapht.event.GraphListener<V,E>)
    • fiji.plugin.trackmate.graph.TimeDirectedNeighborIndex
  • trainableSegmentation.utils.Neighborhood2D
    • trainableSegmentation.utils.Neighborhood2DC4
    • trainableSegmentation.utils.Neighborhood2DC8
  • ini.trakem2.io.NeuroML
  • sc.fiji.snt.io.NeuroMorphoLoader (implements sc.fiji.snt.io.RemoteSWCLoader)
  • ini.trakem2.New_DB_Project (implements ij.plugin.PlugIn)
  • sc.fiji.i5d.plugin.New_Image5D (implements ij.plugin.PlugIn)
  • ini.trakem2.New_Project (implements ij.plugin.PlugIn)
  • video2.New_Video (implements ij.plugin.PlugIn)
  • mpicbg.imglib.container.basictypecontainer.array.NIOByteArray (implements mpicbg.imglib.container.basictypecontainer.array.ArrayDataAccess<A>, mpicbg.imglib.container.basictypecontainer.ByteAccess)
  • mpicbg.imglib.container.basictypecontainer.array.NIOCharArray (implements mpicbg.imglib.container.basictypecontainer.array.ArrayDataAccess<A>, mpicbg.imglib.container.basictypecontainer.CharAccess)
  • mpicbg.imglib.container.basictypecontainer.array.NIODoubleArray (implements mpicbg.imglib.container.basictypecontainer.array.ArrayDataAccess<A>, mpicbg.imglib.container.basictypecontainer.DoubleAccess)
  • mpicbg.imglib.container.basictypecontainer.array.NIOFloatArray (implements mpicbg.imglib.container.basictypecontainer.array.ArrayDataAccess<A>, mpicbg.imglib.container.basictypecontainer.FloatAccess)
  • mpicbg.imglib.container.basictypecontainer.array.NIOIntArray (implements mpicbg.imglib.container.basictypecontainer.array.ArrayDataAccess<A>, mpicbg.imglib.container.basictypecontainer.IntAccess)
  • mpicbg.imglib.container.basictypecontainer.array.NIOLongArray (implements mpicbg.imglib.container.basictypecontainer.array.ArrayDataAccess<A>, mpicbg.imglib.container.basictypecontainer.LongAccess)
  • mpicbg.imglib.container.basictypecontainer.array.NIOShortArray (implements mpicbg.imglib.container.basictypecontainer.array.ArrayDataAccess<A>, mpicbg.imglib.container.basictypecontainer.ShortAccess)
  • fiji.util.NNearestNeighborSearch<T>
  • mpicbg.imglib.algorithm.kdtree.NNearestNeighborSearch<T>
  • ini.trakem2.display.Node<T> (implements ini.trakem2.display.Taggable)
    • ini.trakem2.display.AreaTree.AreaNode
    • ini.trakem2.display.Treeline.RadiusNode
      • ini.trakem2.display.Connector.ConnectorNode
  • ini.trakem2.display.Node.NodeIterator<I> (implements java.util.Iterator<E>)
    • ini.trakem2.display.Node.SubtreeIterator<I>
      • ini.trakem2.display.Node.BreadthFirstSubtreeIterator<I>
      • ini.trakem2.display.Node.FilteredIterator<I>
        • ini.trakem2.display.Node.BranchAndEndNodeIterator<I>
        • ini.trakem2.display.Node.BranchNodeIterator<I>
        • ini.trakem2.display.Node.EndNodeIterator<I>
      • ini.trakem2.display.Node.SlabIterator<I>
  • edu.utexas.clm.archipelago.network.node.NodeCoordinator (implements edu.utexas.clm.archipelago.listen.ClusterStateListener, edu.utexas.clm.archipelago.listen.NodeShellListener, edu.utexas.clm.archipelago.listen.NodeStateListener)
  • edu.utexas.clm.archipelago.network.node.NodeParameters
  • edu.utexas.clm.archipelago.network.node.NodeParametersFactory
  • edu.utexas.clm.archipelago.network.shell.NodeShellParameters
  • edu.utexas.clm.archipelago.network.shell.ssh.NodeShellUserInfo (implements com.jcraft.jsch.UserInfo)
  • sc.fiji.snt.analysis.NodeStatistics<T>
  • fiji.util.node.NonLeaf<T> (implements fiji.util.node.Node<N>)
  • mpicbg.imglib.algorithm.kdtree.node.NonLeaf<T> (implements mpicbg.imglib.algorithm.kdtree.node.Node<N>)
  • mpicbg.trakem2.transform.NonLinearCoordinateTransform (implements mpicbg.trakem2.transform.CoordinateTransform)
    • lenscorrection.NonLinearTransform
  • ij3d.NoopAdapter (implements ij3d.UIAdapter)
  • math3d.NormalEstimator
  • ini.trakem2.imaging.filters.Normalize (implements ini.trakem2.imaging.filters.IFilter)
  • mpicbg.imglib.algorithm.math.NormalizeImageFloat<T> (implements mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • mpicbg.imglib.algorithm.math.NormalizeImageMinMax<T> (implements mpicbg.imglib.algorithm.Algorithm, mpicbg.imglib.algorithm.MultiThreaded)
  • ini.trakem2.imaging.filters.NormalizeLocalContrast (implements ini.trakem2.imaging.filters.IFilter)
  • spim.process.fusion.weights.NormalizingRandomAccessibleInterval<T> (implements net.imglib2.RandomAccessibleInterval<T>)
  • mpicbg.imglib.algorithm.function.NormMinMax<A> (implements mpicbg.imglib.function.Converter<A,B>)
  • imglib.ops.condition.Not<T> (implements imglib.ops.condition.Condition<T>)
  • sc.fiji.io.Nrrd_Writer (implements ij.plugin.PlugIn)
  • nrrd.NrrdHeader
  • nrrd.NrrdInfo
  • mpicbg.spim.registration.segmentation.NucleiConfiguration
  • imglib.ops.function.pn.NullFunction<T> (implements imglib.ops.function.RealFunction<T>)
  • mpicbg.imglib.cursor.link.NullLink (implements mpicbg.imglib.cursor.link.CursorLink)
  • edu.utexas.clm.archipelago.util.NullLogger (implements edu.utexas.clm.archipelago.util.EasyLogger)
  • sc.fiji.i5d.util.NumberedStringSorter
  • script.imglib.math.fn.NumberFunction (implements script.imglib.math.fn.IFunction)
  • fiji.util.NumberParser
  • spim.fiji.spimdata.imgloaders.NumberUtils
  • pal.math.NumericalDerivative
  • fiji.debugging.Object_Inspector (implements ij.plugin.PlugIn, javax.swing.event.TreeWillExpandListener)
  • Utilities.Object3D
  • sc.fiji.snt.viewer.OBJMesh
  • octree.OctreeDialog
  • sc.fiji.omevisual.OMEUtils
  • sc.fiji.omevisual.OMEVisual (implements org.scijava.command.Command)
  • sc.fiji.snt.tracing.cost.OneMinusErf (implements sc.fiji.snt.tracing.cost.Cost)
  • ini.trakem2.Open_DB_Project (implements ij.plugin.PlugIn)
  • sc.fiji.io.Open_DF3 (implements ij.plugin.PlugIn)
  • sc.fiji.i5d.plugin.Open_Image5D (implements ij.plugin.PlugIn)
  • ini.trakem2.Open_Project (implements ij.plugin.PlugIn)
  • sc.fiji.i5d.plugin.Open_Series_As_Image5D (implements ij.plugin.PlugIn)
  • video2.Open_Video (implements ij.plugin.PlugIn)
  • bdv.img.openconnectome.OpenConnectomeDataset (implements java.io.Serializable)
  • bdv.img.openconnectome.OpenConnectomeProject (implements java.io.Serializable)
  • bdv.img.openconnectome.OpenConnectomeTokenInfo (implements java.io.Serializable)
  • bdv.img.openconnectome.OpenConnectomeVolatileArrayLoader (implements bdv.img.cache.CacheArrayLoader<A>)
  • OpenImage5DAdapter
  • bdv.ij.OpenImagePlusPlugIn (implements org.scijava.command.Command)
  • bdv.ij.OpenImarisPlugIn (implements org.scijava.command.Command)
  • spim.fiji.plugin.util.OpenImg
  • OpenStackAdapter
  • org.nfunk.jep.OperatorSet
    • fiji.expressionparser.ImgLibOperatorSet<T>
  • loci.plugins.prefs.Option
    • loci.plugins.prefs.BooleanOption
    • loci.plugins.prefs.DoubleOption
    • loci.plugins.prefs.StringOption
  • ini.trakem2.utils.OptionPanel.Setter
    • ini.trakem2.utils.OptionPanel.BooleanSetter
    • ini.trakem2.utils.OptionPanel.ChoiceIntSetter
    • ini.trakem2.utils.OptionPanel.ChoiceObjectSetter
    • ini.trakem2.utils.OptionPanel.ChoiceStringSetter
    • ini.trakem2.utils.OptionPanel.NumericalSetter
      • ini.trakem2.utils.OptionPanel.DoubleSetter
      • ini.trakem2.utils.OptionPanel.FloatSetter
      • ini.trakem2.utils.OptionPanel.IntSetter
    • ini.trakem2.utils.OptionPanel.StringSetter
  • vib.app.Options
  • org.janelia.thickness.inference.Options (implements java.io.Serializable)
  • loci.plugins.prefs.OptionsDialog
    • loci.plugins.in.ImporterDialog
      • loci.plugins.in.ColorDialog
      • loci.plugins.in.CropDialog
      • loci.plugins.in.FilePatternDialog
      • loci.plugins.in.IdDialog
      • loci.plugins.in.LocationDialog
      • loci.plugins.in.MainDialog (implements java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.MouseListener)
      • loci.plugins.in.MemoryDialog
      • loci.plugins.in.RangeDialog
      • loci.plugins.in.SeriesDialog (implements java.awt.event.ActionListener)
      • loci.plugins.in.SwapDialog (implements java.awt.event.ItemListener)
      • loci.plugins.in.UpgradeDialog
  • loci.plugins.prefs.OptionsList
    • loci.plugins.in.ImporterOptions
  • net.imagej.ui.swing.ops.OpTreeTableNode (implements java.lang.Comparable<T>)
  • imglib.ops.condition.Or<T> (implements imglib.ops.condition.Condition<T>)
  • imglib.ops.operator.binary.Or (implements imglib.ops.operator.BinaryOperator)
  • imglib.ops.operator.unary.OrConstant (implements imglib.ops.operator.UnaryOperator)
  • vib.transforms.OrderedTransformations
  • pal.math.OrthogonalLineFunction (implements pal.math.UnivariateFunction)
  • org.janelia.utility.OuterProductViews
  • mpicbg.imglib.outofbounds.OutOfBoundsStrategy<T>
    • mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirror<T>
    • mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowing<T>
    • mpicbg.imglib.outofbounds.OutOfBoundsStrategyPeriodic<T>
    • mpicbg.imglib.outofbounds.OutOfBoundsStrategyValue<T>
  • mpicbg.imglib.outofbounds.OutOfBoundsStrategyFactory<T> (implements mpicbg.imglib.Factory)
    • mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorExpWindowingFactory<T>
    • mpicbg.imglib.outofbounds.OutOfBoundsStrategyMirrorFactory<T>
    • mpicbg.imglib.outofbounds.OutOfBoundsStrategyPeriodicFactory<T>
    • mpicbg.imglib.outofbounds.OutOfBoundsStrategyValueFactory<T>
  • mpicbg.stitching.fusion.OverlapFusion (implements mpicbg.stitching.fusion.PixelFusion)
  • stitching.OverlapProperties
  • fiji.plugin.trackmate.tracking.overlap.OverlapTrackerFactory (implements fiji.plugin.trackmate.tracking.SpotTrackerFactory)
  • ini.trakem2.display.Overlay
  • process.OverlayFusion
  • mpicbg.stitching.fusion.OverlayFusion
  • util.OverlayRegistered
    • util.Overlay_Registered (implements ij.plugin.PlugIn)
  • ini.trakem2.imaging.P
  • fiji.packaging.Package_Maker (implements ij.plugin.PlugIn)
  • fiji.packaging.Packager
    • fiji.packaging.TarPackager
      • fiji.packaging.TarBz2Packager
      • fiji.packaging.TarGzPackager
    • fiji.packaging.ZipPackager
  • mpicbg.trakem2.util.Pair<A,B>
  • spim.process.interestpointregistration.PairwiseMatch
  • mpicbg.stitching.PairWiseStitchingImgLib
  • mpicbg.stitching.PairWiseStitchingResult
  • mpicbg.panorama.PanoramaCamera<T> (implements mpicbg.models.InvertibleCoordinateTransform)
    • mpicbg.panorama.EquirectangularProjection
    • mpicbg.panorama.RectlinearCamera
  • ini.trakem2.parallel.ParallelMapping<I,O> (implements java.lang.Iterable<T>)
  • bunwarpj.Param
  • parObject
  • mpicbg.spim.io.ParsePattern
  • org.janelia.utility.parse.ParseUtils
  • org.janelia.utility.parse.ParseUtils.DoubleArrayConverter (implements com.beust.jcommander.IStringConverter<T>)
  • org.janelia.utility.parse.ParseUtils.FloatArrayConverter (implements com.beust.jcommander.IStringConverter<T>)
  • org.janelia.utility.parse.ParseUtils.IntArrayConverter (implements com.beust.jcommander.IStringConverter<T>)
  • org.janelia.utility.parse.ParseUtils.LongArrayConverter (implements com.beust.jcommander.IStringConverter<T>)
  • process3d.Particle_Analyzer_3D (implements ij.plugin.filter.PlugInFilter)
  • QuickPALM.ParticleSaver
  • bdv.img.hdf5.Partition
  • ini.trakem2.display.Patch.PatchImage
  • ini.trakem2.display.Patch.TransformProperties
  • edu.utexas.clm.archipelago.ijsupport.bottle.PatchBottle (implements edu.utexas.clm.archipelago.network.translation.Bottle<A>)
  • edu.utexas.clm.archipelago.ijsupport.bottle.PatchBottler (implements edu.utexas.clm.archipelago.network.translation.Bottler<A>)
  • ini.trakem2.scripting.PatchScript
  • sc.fiji.snt.Path (implements java.lang.Comparable<T>)
  • sc.fiji.snt.PathAndFillManager.AllPointsIterator (implements java.util.Iterator<E>)
  • sc.fiji.snt.util.PathCursor<T> (implements net.imglib2.Cursor<T>)
  • sc.fiji.snt.PathDownsampler
  • sc.fiji.snt.PathFitter (implements java.util.concurrent.Callable<V>)
  • sc.fiji.snt.analysis.PathStraightener
  • edu.utexas.clm.archipelago.network.translation.PathSubstitutingFileTranslator (implements edu.utexas.clm.archipelago.network.translation.FileTranslator)
  • vib.oldregistration.PCA_Registration (implements ij.plugin.PlugIn)
  • sc.fiji.io.PDF_Writer (implements ij.plugin.PlugIn)
  • sc.fiji.coloc.results.PDFWriter<T> (implements sc.fiji.coloc.results.ResultHandler<T>)
  • util.Penalty
  • fiji.plugin.trackmate.visualization.PerEdgeFeatureColorGenerator (implements fiji.plugin.trackmate.visualization.TrackColorGenerator)
  • sc.fiji.snt.analysis.PersistenceAnalyzer
  • fiji.plugin.trackmate.visualization.PerSpotFeatureColorGenerator (implements fiji.plugin.trackmate.visualization.TrackColorGenerator)
  • fiji.plugin.trackmate.visualization.PerTrackFeatureColorGenerator (implements fiji.plugin.trackmate.visualization.TrackColorGenerator)
  • sc.fiji.timelapse.Phase_Map (implements ij.plugin.filter.PlugInFilter)
  • sc.fiji.timelapse.Phase_Map.Gauss1D
  • mpicbg.imglib.algorithm.fft.PhaseCorrelation<T,S> (implements mpicbg.imglib.algorithm.Algorithm, mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.MultiThreaded)
  • ini.trakem2.imaging.PhaseCorrelationCalculator
  • mpicbg.imglib.algorithm.fft.PhaseCorrelationPeak (implements java.lang.Comparable<T>)
  • fiji.plugin.volumeviewer.Pic
  • ij3d.behaviors.Picker
  • mpicbg.imglib.algorithm.math.PickImagePeaks<T> (implements mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • loci.plugins.config.PictWidgets (implements loci.plugins.config.IFormatWidgets, java.awt.event.ItemListener)
  • histogram2.PiecewiseLinearCdf
  • ij3d.Pipe
  • PIV_analyser (implements ij.plugin.filter.PlugInFilter)
  • PIV_analyser.PairingParam
  • PIV_analyser.PIVresult
  • PIVAnalyserTestDrive
  • trainableSegmentation.unsupervised.PixelClustering
  • imglib.ops.condition.PixelOnBorder<T> (implements imglib.ops.condition.Condition<T>)
  • trainableSegmentation.utils.PixelRecord (implements java.lang.Comparable<T>)
  • adt.PixelStats
  • bdv.util.PlaceHolderConverterSetup (implements bdv.tools.brightness.ConverterSetup)
  • bdv.util.PlaceHolderOverlayInfo (implements bdv.viewer.TimePointListener, bdv.viewer.TransformListener<A>, bdv.viewer.ViewerStateChangeListener)
  • bdv.util.PlaceHolderSource (implements bdv.viewer.Source<T>)
  • math3d.Plane
  • ij.gui.Plot (implements java.lang.Cloneable)
    • sc.fiji.snt.analysis.sholl.gui.ShollPlot
  • process3d.Plot_Dots (implements java.awt.event.MouseMotionListener, ij.plugin.PlugIn)
  • fiji.plugin.trackmate.action.PlotNSpotsVsTimeAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • sc.fiji.timelapse.PlotUtils
  • mpicbg.ij.clahe.PlugIn (implements ij.plugin.PlugIn)
  • spim.fiji.plugin.resave.PluginHelper
  • bdv.ij.util.PluginHelper
  • spim.fiji.plugin.resave.PluginHelper.ChooseXmlFileListener (implements java.awt.event.ActionListener)
  • bdv.ij.util.PluginHelper.ChooseXmlFileListener (implements java.awt.event.ActionListener)
  • mpicbg.ij.plugin.PMCCBlockFlow (implements ij.plugin.PlugIn)
  • delaunay.Pnt
  • sc.fiji.analyzeSkeleton.Point
  • mpicbg.models.Point (implements java.io.Serializable)
    • mpicbg.spim.registration.detection.AbstractDetection<T> (implements fiji.util.node.Leaf<N>)
      • mpicbg.spim.registration.detection.Detection
      • mpicbg.spim.registration.detection.DetectionView<S,T>
        • mpicbg.spim.registration.bead.Bead
        • mpicbg.spim.registration.segmentation.Nucleus
    • spim.process.interestpointregistration.Detection (implements fiji.util.node.Leaf<N>)
    • spim.fiji.spimdata.interestpoints.InterestPoint (implements net.imglib2.RealLocalizable)
      • spim.fiji.spimdata.interestpoints.InterestPointValue
    • mpicbg.pointdescriptor.LinkedPoint<P>
    • process.Particle (implements fiji.util.node.Leaf<N>)
    • edu.utexas.clm.archipelago.ijsupport.bottle.PointBottle.IdPoint
    • mpicbg.pointdescriptor.test.PointNode (implements fiji.util.node.Leaf<N>)
    • mpicbg.models.Vertex
  • stitching.model.Point
  • stitching.Point2D
  • math3d.Point3d
    • vib.BenesNamedPoint
  • jRenderer3D.Point3D
  • stitching.Point3D
  • edu.utexas.clm.archipelago.ijsupport.bottle.PointBottle (implements edu.utexas.clm.archipelago.network.translation.Bottle<A>)
  • edu.utexas.clm.archipelago.ijsupport.bottle.PointBottler (implements edu.utexas.clm.archipelago.network.translation.Bottler<A>)
  • sc.fiji.snt.util.PointInImage (implements sc.fiji.snt.util.SNTPoint)
    • sc.fiji.snt.util.PointInCanvas (implements sc.fiji.snt.util.SNTPoint)
    • sc.fiji.snt.util.ShollPoint
    • sc.fiji.snt.util.SWCPoint (implements java.lang.Comparable<T>)
  • vib.PointList (implements java.lang.Iterable<T>)
  • mpicbg.models.PointMatch (implements java.io.Serializable)
    • selection.ExtendedPointMatch
    • mpicbg.spim.mpicbg.PointMatchGeneric<P>
    • mpicbg.stitching.PointMatchStitching
  • stitching.model.PointMatch
  • adt.Points
  • sc.fiji.analyzeSkeleton.ita.PointUtils
  • mpicbg.ij.visualization.PointVis
  • mpicbg.models.PolynomialTransform2D (implements mpicbg.models.CoordinateTransform)
    • mpicbg.trakem2.transform.PolynomialTransform2D (implements mpicbg.trakem2.transform.CoordinateTransform)
  • org.nfunk.jep.function.PostfixMathCommand (implements org.nfunk.jep.function.PostfixMathCommandI)
    • fiji.expressionparser.function.ImgLibBandPassFilter<T> (implements fiji.expressionparser.function.ImgLibFunction<T>)
    • fiji.expressionparser.function.ImgLibDithering<T> (implements fiji.expressionparser.function.ImgLibFunction<T>)
    • fiji.expressionparser.function.SingleOperandAbstractFunction<T> (implements fiji.expressionparser.function.ImgLibFunction<T>)
      • fiji.expressionparser.function.ImgLibNormalize<T>
    • fiji.expressionparser.function.SingleOperandPixelBasedAbstractFunction<T> (implements fiji.expressionparser.function.ImgLibFunction<T>)
      • fiji.expressionparser.function.ImgLibAbs<T>
      • fiji.expressionparser.function.ImgLibArcCosine<T>
      • fiji.expressionparser.function.ImgLibArcSine<T>
      • fiji.expressionparser.function.ImgLibArcTangent<T>
      • fiji.expressionparser.function.ImgLibCeil<T>
      • fiji.expressionparser.function.ImgLibCosine<T>
      • fiji.expressionparser.function.ImgLibExp<T>
      • fiji.expressionparser.function.ImgLibFloor<T>
      • fiji.expressionparser.function.ImgLibLog<T>
      • fiji.expressionparser.function.ImgLibLogical.Not<T>
      • fiji.expressionparser.function.ImgLibRound<T>
      • fiji.expressionparser.function.ImgLibSine<T>
      • fiji.expressionparser.function.ImgLibSquareRoot<T>
      • fiji.expressionparser.function.ImgLibTangent<T>
      • fiji.expressionparser.function.ImgLibUMinus<T>
    • fiji.expressionparser.function.TwoOperandsAbstractFunction<T> (implements fiji.expressionparser.function.ImgLibFunction<T>)
      • fiji.expressionparser.function.ImgLibGaussConv<T>
    • fiji.expressionparser.function.TwoOperandsPixelBasedAbstractFunction<T> (implements fiji.expressionparser.function.ImgLibFunction<T>)
      • fiji.expressionparser.function.ImgLibAdd<T>
      • fiji.expressionparser.function.ImgLibArcTangent2<T>
      • fiji.expressionparser.function.ImgLibComparison.Equal<T>
      • fiji.expressionparser.function.ImgLibComparison.GreaterOrEqual<T>
      • fiji.expressionparser.function.ImgLibComparison.GreaterThan<T>
      • fiji.expressionparser.function.ImgLibComparison.LowerOrEqual<T>
      • fiji.expressionparser.function.ImgLibComparison.LowerThan<T>
      • fiji.expressionparser.function.ImgLibComparison.NotEqual<T>
      • fiji.expressionparser.function.ImgLibDivide<T>
      • fiji.expressionparser.function.ImgLibLogical.And<T>
      • fiji.expressionparser.function.ImgLibLogical.Or<T>
      • fiji.expressionparser.function.ImgLibModulus<T>
      • fiji.expressionparser.function.ImgLibMultiply<T>
      • fiji.expressionparser.function.ImgLibPower<T>
      • fiji.expressionparser.function.ImgLibSubtract<T>
  • org.janelia.it.jacs.shared.ffmpeg.PPMFileAcceptor (implements org.janelia.it.jacs.shared.ffmpeg.FFMPGByteAcceptor)
  • mpicbg.imglib.algorithm.Precision
  • net.imglib2.PredicateCursor<T> (implements net.imglib2.Cursor<T>)
  • bdv.viewer.render.Prefetcher
  • bdv.util.Prefs
  • fiji.Prettify_Wiki_Screenshot (implements ij.plugin.filter.PlugInFilter)
  • mpicbg.spim.vis3d.PreviewRegistration
  • ij3d.gui.PrimitiveDialogs
  • trainableSegmentation.utils.PrincipalComponentAnalysis
  • bdv.util.PrintSequenceMipmapInfo
  • edu.utexas.clm.archipelago.util.PrintStreamLogger (implements edu.utexas.clm.archipelago.util.EasyLogger)
  • script.imglib.algorithm.Process (implements script.imglib.math.fn.IFunction)
  • ini.trakem2.parallel.Process
  • spim.process.interestpointdetection.ProcessDOG
  • spim.process.interestpointdetection.ProcessDOM
  • spim.process.fusion.deconvolution.ProcessForDeconvolution
  • spim.process.fusion.weightedavg.ProcessFusion
    • spim.process.fusion.weightedavg.ProcessIndependent
    • spim.process.fusion.weightedavg.ProcessParalell
    • spim.process.fusion.weightedavg.ProcessSequential
  • spim.process.fusion.weightedavg.ProcessIndependentPortion<T> (implements java.util.concurrent.Callable<V>)
  • edu.utexas.clm.archipelago.compute.ProcessManager<T> (implements java.lang.Runnable, java.io.Serializable)
  • edu.utexas.clm.archipelago.util.ProcessManagerCoreComparator (implements java.util.Comparator<T>)
  • spim.process.fusion.weightedavg.ProcessParalellPortion<T> (implements java.util.concurrent.Callable<V>)
    • spim.process.fusion.weightedavg.ProcessParalellPortionWeight<T>
    • spim.process.fusion.weightedavg.ProcessParalellPortionWeights<T>
    • spim.process.fusion.weightedavg.ProcessSequentialPortion<T>
      • spim.process.fusion.weightedavg.ProcessSequentialPortionWeight<T>
      • spim.process.fusion.weightedavg.ProcessSequentialPortionWeights<T>
  • sc.fiji.snt.analysis.sholl.Profile (implements sc.fiji.snt.analysis.sholl.ProfileProperties)
  • sc.fiji.snt.analysis.sholl.ProfileEntry (implements java.lang.Comparable<T>)
  • sc.fiji.snt.analysis.ProfileProcessor<T> (implements java.util.concurrent.Callable<V>)
  • mpicbg.spim.io.ProgramConfiguration
  • bunwarpj.ProgressBar
  • vib.app.gui.ProgressIndicator (implements vib.app.module.ModuleListener)
  • imglib.ops.observer.ProgressTracker (implements java.util.Observer)
  • bdv.export.ProgressWriterConsole (implements bdv.export.ProgressWriter)
  • spim.fiji.plugin.resave.ProgressWriterIJ (implements bdv.export.ProgressWriter)
  • bdv.ij.util.ProgressWriterIJ (implements bdv.export.ProgressWriter)
  • bdv.export.ProgressWriterNull (implements bdv.export.ProgressWriter)
  • bdv.viewer.render.ProjectorUtils
  • ini.trakem2.tree.ProjectThing.Profile_List
  • ini.trakem2.persistence.ProjectTiler
  • ini.trakem2.utils.ProjectToolbar (implements java.awt.event.MouseListener)
  • bdv.export.ProposeMipmaps
  • Psychomorph_TEM_Reader (implements ij.plugin.filter.PlugInFilter)
  • loci.plugins.config.QTWidgets (implements loci.plugins.config.IFormatWidgets, java.awt.event.ItemListener)
  • util.Quantile_Based_Normalization (implements java.awt.event.ActionListener, java.awt.event.ItemListener, ij.plugin.PlugIn)
  • util.Quantile_Based_Normalization.Mask
  • mpicbg.pointdescriptor.matcher.Quaternion
  • edu.utexas.clm.archipelago.compute.QuickCallable<T> (implements edu.utexas.clm.archipelago.compute.SerializableCallable<T>)
  • edu.utexas.clm.archipelago.compute.QuickRunnable (implements java.lang.Runnable)
  • fiji.drawing.Radial_Gradient (implements ij.plugin.filter.PlugInFilter)
  • fiji.stacks.Radial_Reslice (implements ij.plugin.filter.PlugInFilter)
  • fiji.util.RadiusNeighborSearch<T>
  • mpicbg.imglib.algorithm.kdtree.RadiusNeighborSearch<T>
  • ini.trakem2.io.RagMipMaps
  • sc.fiji.balloonSegmentation.utils.RandPermutation
  • ini.trakem2.imaging.filters.RankFilter (implements ini.trakem2.imaging.filters.IFilter)
  • spim.process.interestpointregistration.RANSAC
  • spim.process.interestpointregistration.RANSACParameters
  • org.janelia.intensity.RansacRegressionFilter (implements org.janelia.intensity.PointMatchFilter)
  • org.janelia.intensity.RansacRegressionReduceFilter (implements org.janelia.intensity.PointMatchFilter)
  • vib.Raster_Rigid (implements ij.plugin.PlugIn)
  • RATS_ (implements ij.plugin.filter.PlugInFilter)
  • RATSQuadtree
  • ini.trakem2.io.RawMipMaps
  • org.imagearchive.lsm.reader.Reader
  • org.imagearchive.lsm.toolbox.Reader
  • org.imagearchive.lsm.toolbox.ReaderToolkit
  • loci.formats.ReaderWrapper (implements loci.formats.IFormatReader)
    • loci.plugins.util.ImageProcessorReader
    • loci.plugins.util.VirtualReader
  • sc.fiji.cellCounter.ReadXML
  • bdv.tools.brightness.RealARGBColorConverterSetup (implements bdv.tools.brightness.ConverterSetup)
  • mpicbg.imglib.algorithm.histogram.arbitrary.RealHistogramBinFactory<T> (implements mpicbg.imglib.algorithm.histogram.HistogramBinFactory<T>)
  • net.imglib2.display.RealLUTARGBColorConverter<R> (implements net.imglib2.display.RealARGBColorConverter<R>)
  • bdv.util.RealRandomAccessibleSource<T> (implements bdv.viewer.Source<T>)
    • bdv.util.RealRandomAccessibleIntervalSource<T>
  • mpicbg.util.RealStreamPMCC
  • mpicbg.util.RealSum
  • org.janelia.thickness.trakem2.RealSumARGBNCC (implements java.util.concurrent.Callable<V>)
  • org.janelia.thickness.plugin.RealSumFloatNCC (implements java.util.concurrent.Callable<V>)
  • mpicbg.imglib.function.RealTypeConverter<A,B> (implements mpicbg.imglib.function.Converter<A,B>)
  • process3d.Rebin
    • process3d.Rebin_ (implements ij.plugin.filter.PlugInFilter)
  • fiji.util.Recent_Commands (implements java.awt.event.ActionListener, ij.CommandListener, java.awt.event.KeyListener, javax.swing.event.ListSelectionListener, ij.plugin.PlugIn)
  • imglib.ops.operator.unary.Reciprocal (implements imglib.ops.operator.UnaryOperator)
  • sc.fiji.snt.tracing.cost.Reciprocal (implements sc.fiji.snt.tracing.cost.Cost)
  • fiji.plugin.trackmate.action.RecomputeFeatureAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • QuickPALM.Reconstruct_Dataset (implements ij.plugin.PlugIn)
  • edu.utexas.clm.reconstructreader.reconstruct.Reconstruct_Reader (implements ij.plugin.PlugIn)
  • edu.utexas.clm.reconstructreader.trakem2.Reconstruct_Writer (implements ij.plugin.PlugIn, ini.trakem2.plugin.TPlugIn)
  • ini.trakem2.utils.ReconstructArea
  • edu.utexas.clm.reconstructreader.reconstruct.ReconstructAreaList (implements edu.utexas.clm.reconstructreader.reconstruct.ContourSet)
  • mpicbg.spim.Reconstruction
  • edu.utexas.clm.reconstructreader.reconstruct.ReconstructProfile
  • edu.utexas.clm.reconstructreader.reconstruct.ReconstructProfileList (implements edu.utexas.clm.reconstructreader.reconstruct.ContourSet)
  • edu.utexas.clm.reconstructreader.reconstruct.ReconstructSection
  • edu.utexas.clm.reconstructreader.reconstruct.ReconstructTranslator
  • edu.utexas.clm.reconstructreader.reconstruct.ReconstructZTrace (implements edu.utexas.clm.reconstructreader.reconstruct.ContourSet)
  • org.imagearchive.lsm.toolbox.info.scaninfo.Recording
  • fiji.plugin.trackmate.graph.RecursiveCumSum<V,E>
  • ini.trakem2.utils.RedPhone
  • ini.trakem2.display.Region<T>
  • mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFactory<T> (implements mpicbg.imglib.Factory)
  • register_virtual_stack.Register_Virtual_Stack_MT (implements ij.plugin.PlugIn)
  • register_virtual_stack.Register_Virtual_Stack_MT.Param
  • spim.fiji.spimdata.explorer.popup.RegisterInterestPointsPopup.MyActionListener (implements java.awt.event.ActionListener)
  • vib.oldregistration.RegistrationAlgorithm
    • landmarks.AffineFromLandmarks
      • landmarks.Affine_From_Landmarks (implements ij.plugin.PlugIn)
    • landmarks.BooksteinFromLandmarks
      • landmarks.Bookstein_From_Landmarks (implements ij.plugin.PlugIn)
    • landmarks.RigidFromLandmarks
      • landmarks.Rigid_From_Landmarks (implements ij.plugin.PlugIn)
  • vib.oldregistration.RegistrationAlgorithm.ImagePoint
  • spim.fiji.spimdata.explorer.registration.RegistrationExplorer<AS,X> (implements spim.fiji.spimdata.explorer.SelectedViewDescriptionListener<AS>)
  • spim.fiji.spimdata.explorer.popup.RegistrationExplorerPopup.MyActionListener (implements java.awt.event.ActionListener)
  • vib.RegistrationOptimizer
  • landmarks.RegistrationResult (implements java.lang.Comparable<T>)
  • fiji.plugin.timelapsedisplay.RegistrationStatistics
  • spim.process.interestpointregistration.registrationstatistics.RegistrationStatistics (implements java.lang.Comparable<T>)
  • mpicbg.trakem2.align.RegularizedAffineLayerAlignment
  • mpicbg.spim.registration.bead.laplace.RejectStatistics
  • vib.Relabel_ (implements java.awt.event.ActionListener, ij.plugin.filter.PlugInFilter)
  • bdv.img.remote.RemoteImageLoader (implements bdv.ViewerImgLoader)
  • bdv.img.remote.RemoteImageLoaderMetaData
  • bdv.img.remote.RemoteVolatileShortArrayLoader (implements bdv.img.cache.CacheArrayLoader<A>)
  • Remove_Slope (implements ij.plugin.filter.PlugInFilter)
  • spim.fiji.spimdata.explorer.popup.RemoveDetectionsPopup.MyActionListener (implements java.awt.event.ActionListener)
  • selection.RemoveItemListener (implements java.awt.event.ActionListener)
  • mpicbg.ij.plugin.RemoveSaturated (implements ij.plugin.PlugIn)
  • spim.fiji.spimdata.explorer.popup.RemoveTransformationPopup.MyActionListener (implements java.awt.event.ActionListener)
  • bdv.img.RenamableSource<T> (implements bdv.viewer.Source<T>)
  • spimopener.Rename (implements ij.plugin.PlugIn)
  • ini.trakem2.tree.RenameThingStep (implements ini.trakem2.display.DoStep)
  • org.janelia.intensity.Render
  • ini.trakem2.utils.Render
  • bdv.viewer.overlay.RenderBoxHelper
  • bdv.tools.boundingbox.RenderBoxHelper
  • spim.fiji.spimdata.explorer.popup.ReorientSamplePopup.MyActionListener (implements java.awt.event.ActionListener)
  • org.janelia.utility.ui.RepeatingReleasedEventsFixer (implements java.awt.event.AWTEventListener)
  • Replace_Value (implements ij.plugin.filter.PlugInFilter)
  • org.janelia.utility.arrays.ReplaceNaNs
  • spim.fiji.plugin.resave.Resave_HDF5 (implements ij.plugin.PlugIn)
  • spim.fiji.plugin.resave.Resave_TIFF (implements ij.plugin.PlugIn)
  • spim.fiji.plugin.resave.Resave_TIFF.Parameters
  • spim.fiji.spimdata.explorer.popup.ResavePopup.MyActionListener (implements java.awt.event.ActionListener)
  • bigwarp.scripts.RescaleLandmarks
  • ini.trakem2.imaging.filters.ResetMinAndMax (implements ini.trakem2.imaging.filters.IFilter)
  • fiji.plugin.trackmate.action.ResetSpotTimeFeatureAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.tracking.sparselap.costmatrix.ResizableDoubleArray
  • Reslice_Z (implements ij.plugin.filter.PlugInFilter)
  • Retinex_ (implements ij.plugin.PlugIn)
  • RGB_to_CIELAB (implements ij.plugin.filter.PlugInFilter)
  • sc.fiji.i5d.plugin.RGB_to_Image5D (implements ij.plugin.PlugIn)
  • script.imglib.color.fn.RGBAOp (implements script.imglib.math.fn.IFunction)
    • script.imglib.color.fn.ChannelOp
      • script.imglib.color.Alpha
      • script.imglib.color.Blue
      • script.imglib.color.Channel
      • script.imglib.color.Green
      • script.imglib.color.Red
    • script.imglib.color.fn.HSBOp
      • script.imglib.color.Brightness
      • script.imglib.color.Hue
      • script.imglib.color.Saturation
    • script.imglib.color.Luminance
  • util.RGBToLuminance
    • util.RGB_to_Luminance (implements ij.plugin.PlugIn)
  • spim.process.interestpointregistration.geometricdescriptor.RGLDMMatcher
  • spim.process.interestpointregistration.geometricdescriptor.RGLDMPairwise (implements java.util.concurrent.Callable<V>)
  • spim.process.interestpointregistration.geometricdescriptor.RGLDMParameters
  • vib.RigidRegistration
    • vib.RigidRegistration_ (implements ij.plugin.filter.PlugInFilter)
  • mpicbg.util.RingBuffer.RingBufferIterator (implements java.util.Iterator<E>)
  • mpicbg.util.RingBuffer.RingBufferListIterator (implements java.util.ListIterator<E>)
  • mpicbg.trakem2.util.RobustNormalizeLocalContrast
  • ini.trakem2.imaging.filters.RobustNormalizeLocalContrast (implements ini.trakem2.imaging.filters.IFilter)
  • mpicbg.trakem2.util.RobustNormalizeLocalContrast.ByteSetter (implements mpicbg.trakem2.util.RobustNormalizeLocalContrast.PixelSetter)
  • mpicbg.trakem2.util.RobustNormalizeLocalContrast.FloatSetter (implements mpicbg.trakem2.util.RobustNormalizeLocalContrast.PixelSetter)
  • mpicbg.trakem2.util.RobustNormalizeLocalContrast.ShortSetter (implements mpicbg.trakem2.util.RobustNormalizeLocalContrast.PixelSetter)
  • fiji.denoise.ROF_Denoise (implements ij.plugin.filter.PlugInFilter)
  • util.RohlfingSBA (implements ij.plugin.PlugIn)
    • Rohlfing_SBA
  • ij.gui.Roi (implements java.lang.Cloneable, java.lang.Iterable<T>, java.io.Serializable)
    • bunwarpj.PointHandler
    • ij.gui.PolygonRoi
      • sc.fiji.timelapse.PolygonRoiPublic
    • ij.gui.ShapeRoi
      • ij.gui.ShapeRoiHelper
    • fiji.plugin.trackmate.visualization.hyperstack.SpotOverlay
    • fiji.plugin.trackmate.visualization.hyperstack.TrackOverlay
  • ROI_3D (implements ij.plugin.PlugIn)
  • mpicbg.imglib.algorithm.ROIAlgorithm<T,S> (implements mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.OutputAlgorithm<T>)
    • mpicbg.imglib.algorithm.roi.DirectConvolution<T,R,S>
      • mpicbg.imglib.algorithm.roi.DirectCrossCorr<T,R,S>
    • mpicbg.imglib.algorithm.roi.StatisticalOperation<T>
      • mpicbg.imglib.algorithm.roi.MedianFilter<T>
      • mpicbg.imglib.algorithm.roi.MorphDilate<T>
      • mpicbg.imglib.algorithm.roi.MorphErode<T>
  • ROIBrush_ (implements ij.plugin.PlugIn)
  • events.RoiEvent
  • sc.fiji.snt.plugin.ROIExporterCmd (implements org.scijava.command.Command)
  • loci.plugins.util.ROIHandler
  • trainableSegmentation.RoiListOverlay (implements fiji.util.gui.OverlayedImageCanvas.Overlay)
  • siox.RoiOverlay (implements fiji.util.gui.OverlayedImageCanvas.Overlay)
  • fiji.statistics.RoiStatistics
  • fiji.statistics.RoiStatistics.ByteAccessor (implements fiji.statistics.RoiStatistics.Accessor)
  • fiji.statistics.RoiStatistics.FloatAccessor (implements fiji.statistics.RoiStatistics.Accessor)
  • fiji.statistics.RoiStatistics.GenericAccumulator (implements fiji.statistics.RoiStatistics.Accumulator)
  • fiji.statistics.RoiStatistics.RectangleAccumulator (implements fiji.statistics.RoiStatistics.Accumulator)
  • fiji.statistics.RoiStatistics.RGBAccessor (implements fiji.statistics.RoiStatistics.Accessor)
  • fiji.statistics.RoiStatistics.ShortAccessor (implements fiji.statistics.RoiStatistics.Accessor)
  • events.RoiWatcher
  • sc.fiji.omevisual.gui.view.RootLayoutController
  • edu.utexas.clm.archipelago.ui.RootNodeConfigDialog (implements java.awt.event.ActionListener)
  • bigwarp.util.Rotation2DHelpers
  • fiji.selection.Rounded_Rectangle (implements ij.plugin.filter.PlugInFilter)
  • QuickPALM.Run_MyMacro (implements ij.plugin.PlugIn)
  • mpicbg.ij.RunTpsMapping
  • sc.fiji.io.Save_DF3 (implements ij.plugin.PlugIn)
  • sc.fiji.i5d.plugin.Save_Image5D (implements ij.plugin.PlugIn)
  • QuickPALM.Save_particles_table2img (implements ij.plugin.PlugIn)
  • spim.process.fusion.export.Save3dTIFF (implements spim.process.fusion.export.ImgExportTitle)
  • selection.SaveListener (implements java.awt.event.ActionListener)
  • ini.trakem2.utils.Saver
  • ij3d.SaveSession
  • mpicbg.ij.integral.Scale
  • mpicbg.imglib.algorithm.integral.ScaleAreaAveraging2d<T,R> (implements mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • bdv.viewer.overlay.ScaleBarOverlayRenderer
  • net.imglib2.display.ScaledARGBConverter<T> (implements net.imglib2.display.ColorConverter, net.imglib2.converter.Converter<A,B>)
    • net.imglib2.display.ScaledARGBConverter.ARGB
    • net.imglib2.display.ScaledARGBConverter.VolatileARGB
  • mpicbg.imglib.algorithm.scalespace.ScaleSpace<A,B> (implements mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.MultiThreaded, mpicbg.imglib.algorithm.OutputAlgorithm<T>)
  • org.janelia.thickness.inference.visitor.ScalingFactorsVisitor.DoubleArrayIterable (implements java.lang.Iterable<T>)
  • org.imagearchive.lsm.toolbox.info.scaninfo.ScanInfo
  • ij3d.ScenegraphDebugger
  • org.scijava.java3d.SceneGraphObject
    • org.scijava.java3d.Node
      • org.scijava.java3d.Group
        • org.scijava.java3d.BranchGroup
          • ij3d.shapes.BoundingBox
          • ij3d.shapes.BoundingSphere
          • ij3d.Content (implements ij3d.AxisConstants, ij3d.ContentConstants, ij3d.UniverseListener)
          • ij3d.ContentInstant (implements ij3d.ContentConstants, ij3d.UniverseListener)
          • ij3d.ContentNode
            • customnode.CustomMeshNode
              • customnode.CustomMultiMesh
            • volumeCalculator.GraphContentNode
            • isosurface.MeshGroup
            • surfaceplot.SurfacePlotGroup (implements java.awt.event.AdjustmentListener)
            • voltex.VoltexGroup
              • orthoslice.MultiOrthoGroup
              • orthoslice.OrthoGroup
          • ij3d.shapes.CoordinateSystem
          • ij3d.pointlist.PointListShape (implements vib.PointList.PointListListener)
          • ij3d.shapes.Scalebar
      • org.scijava.java3d.Leaf
        • org.scijava.java3d.Behavior
          • ij3d.behaviors.InteractiveBehavior
            • ij3d.segmentation.Blob_Segmentation_in_3D.GrowBlob
            • ini.trakem2.display.d3d.ControlClickBehavior
            • volumeCalculator.CustomVolumeBehavior2
          • ij3d.behaviors.WaitForNextFrameBehavior
        • org.scijava.java3d.Shape3D
          • customnode.CustomMesh
            • customnode.CustomIndexedTriangleMesh
              • customnode.Primitive
                • customnode.Box
                • customnode.Cone
                • customnode.Sphere
                • customnode.Tube
            • customnode.CustomLineMesh
            • customnode.CustomPointMesh
            • customnode.CustomTriangleMesh
              • customnode.CustomQuadMesh
              • customnode.CustomTransparentTriangleMesh
          • surfaceplot.SurfacePlot
  • sc.fiji.snt.SciViewSNT
  • bdv.ij.export.Scripting
  • bdv.ij.export.Scripting.PartitionedSequenceWriter
  • sc.fiji.snt.gui.ScriptInstaller (implements javax.swing.event.MenuKeyListener)
  • Scrollable_StackWindow (implements ij.plugin.PlugIn)
  • loci.plugins.config.SDTWidgets (implements loci.plugins.config.IFormatWidgets, java.awt.event.ItemListener)
  • Seam_Remover (implements ij.plugin.filter.PlugInFilter)
  • ini.trakem2.utils.Search
  • sc.fiji.snt.tracing.artist.SearchArtistFactory
  • sc.fiji.snt.tracing.image.SearchImageStack<V> (implements java.lang.Iterable<T>)
  • sc.fiji.snt.tracing.artist.SearchThreadArtist (implements sc.fiji.snt.tracing.artist.SearchArtist)
  • fiji.process3d.SEDT (implements ij.plugin.filter.PlugInFilter)
  • ini.trakem2.imaging.Segmentation
  • ini.trakem2.imaging.Segmentation.BlowCommander
  • ini.trakem2.imaging.Segmentation.BlowRunner
  • ini.trakem2.imaging.Segmentation.FastMarchingParam
  • mpicbg.spim.registration.bead.SegmentationBenchmark
  • vib.segment.SegmentationEditor (implements ij.plugin.PlugIn)
    • Segmentation_Editor
  • siox.SegmentationInfo (implements java.io.Serializable)
  • vib.SegmentationViewer_ (implements ij.plugin.PlugIn)
  • oldsegmenters.SegmentatorModel
  • fiji.selection.Select_Bounding_Box (implements ij.plugin.filter.PlugInFilter)
  • ini.trakem2.display.Selection
  • fiji.plugin.trackmate.SelectionModel
  • Series_Labeler (implements ij.gui.DialogListener, ij.plugin.filter.ExtendedPlugInFilter, ij.ImageListener)
  • Series_Labeler.AbstractStampFormat
    • Series_Labeler.DecimalLabelFormat
      • Series_Labeler.CustomLabelFormat
    • Series_Labeler.DigitalLabelFormat
  • Series_Labeler.StackType
    • Series_Labeler.TimeStackType
    • Series_Labeler.ZStackType
  • org.imagearchive.lsm.toolbox.ServiceMediator
  • sc.fiji.i5d.plugin.Set_Channel_Display (implements ij.plugin.PlugIn)
  • sc.fiji.i5d.plugin.Set_Channel_Labels (implements ij.plugin.PlugIn)
  • sc.fiji.i5d.plugin.Set_Position (implements ij.plugin.PlugIn)
  • fiji.plugin.trackmate.Settings
  • bdv.ij.export.SetupAggregator
  • bdv.tools.brightness.SetupAssignments
  • fiji.geom.Shape_Index_Map (implements ij.plugin.filter.PlugInFilter)
  • octree.ShapeGroup (implements java.lang.Comparable<T>)
  • mpicbg.imglib.cursor.shapelist.ShapeListCache<T>
    • mpicbg.imglib.cursor.shapelist.ShapeListCacheFIFO<T>
  • ini.trakem2.display.inspect.ShapeProxy (implements java.awt.Shape)
  • org.janelia.thickness.ShiftCoordinates
  • sc.fiji.snt.plugin.ij1.Sholl_Analysis (implements ij.gui.DialogListener, ij.plugin.PlugIn)
  • sc.fiji.snt.plugin.ij1.Sholl_Utils (implements ij.plugin.PlugIn)
  • sc.fiji.snt.gui.ShollAnalysisDialog.ShollPoint (implements java.lang.Comparable<T>)
  • sc.fiji.snt.gui.ShollAnalysisDialog.ShollResults
  • sc.fiji.snt.plugin.ij1.ShollAnalysisPlugin (implements ij.gui.DialogListener, ij.plugin.PlugIn)
  • sc.fiji.snt.analysis.ShollAnalyzer
  • sc.fiji.snt.plugin.ij1.ShollOptions (implements ij.plugin.PlugIn)
  • sc.fiji.snt.analysis.sholl.gui.ShollOverlay (implements sc.fiji.snt.analysis.sholl.ProfileProperties)
  • sc.fiji.snt.analysis.sholl.ShollUtils
  • mpicbg.imglib.container.basictypecontainer.array.ShortArray (implements mpicbg.imglib.container.basictypecontainer.array.ArrayDataAccess<A>, mpicbg.imglib.container.basictypecontainer.ShortAccess)
    • mpicbg.imglib.wrapper.ExistingShortArrays
  • ij3d.shortcuts.ShortCuts
  • vib.Show_centers (implements ij.plugin.filter.PlugInFilter)
  • isosurface.Show_Colour_Surfaces (implements ij.plugin.PlugIn)
  • Show_Label_Centers (implements ij.plugin.filter.PlugInFilter)
  • SIFT_Align (implements java.awt.event.KeyListener, ij.plugin.PlugIn)
  • SIFT_ExtractPointRoi (implements ij.plugin.PlugIn)
  • SIFT_Test (implements ij.plugin.PlugIn)
  • edu.utexas.clm.archipelago.ijsupport.bottle.SIFTParamBottle (implements edu.utexas.clm.archipelago.network.translation.Bottle<A>)
  • edu.utexas.clm.archipelago.ijsupport.bottle.SIFTParamBottler (implements edu.utexas.clm.archipelago.network.translation.Bottler<A>)
  • sc.fiji.snt.util.SigmaUtils
  • levelsets.filter.SimpleEdgeDetect (implements levelsets.filter.Filter)
  • spim.fiji.spimdata.explorer.SimpleInfoBox
  • mpicbg.pointdescriptor.matcher.SimpleMatcher (implements mpicbg.pointdescriptor.matcher.Matcher)
    • mpicbg.pointdescriptor.matcher.ModelPriorMatcher
  • mpicbg.imglib.multithreading.SimpleMultiThreading
  • fiji.util.node.SimpleNode (implements fiji.util.node.Leaf<N>)
  • mpicbg.imglib.algorithm.kdtree.node.SimpleNode (implements mpicbg.imglib.algorithm.kdtree.node.Leaf<N>)
  • mpicbg.spim.segmentation.SimplePeak
  • mpicbg.icp.SimplePointMatchIdentification<P> (implements mpicbg.icp.PointMatchIdentification<P>)
  • bdv.viewer.render.SimpleVolatileProjector<A,B> (implements bdv.viewer.render.VolatileProjector)
  • mpicbg.spim.simulation.SimulateBeadImage
  • siox.Siox_Segmentation (implements ij.plugin.PlugIn)
  • org.siox.SioxSegmentator
  • sc.fiji.snt.analysis.SkeletonConverter
  • sc.fiji.skeletonize3D.Skeletonize3D_ (implements ij.plugin.filter.PlugInFilter)
  • sc.fiji.snt.plugin.SkeletonizerCmd (implements org.scijava.command.Command)
  • sc.fiji.analyzeSkeleton.SkeletonResult
  • mpicbg.spim.mpicbg.SketchTikZFileObject
  • ini.trakem2.vector.SkinMaker
  • ini.trakem2.vector.SkinMaker.Match
  • Slice_Keeper (implements ij.plugin.PlugIn)
  • Slice_Remover (implements ij.plugin.PlugIn)
  • events.SliceEvent
  • fiji.tool.SliceObserver (implements java.awt.event.AdjustmentListener, ij.ImageListener, java.awt.event.MouseWheelListener, java.awt.event.WindowListener)
  • loci.plugins.Slicer (implements ij.plugin.filter.PlugInFilter)
  • events.SliceWatcher
  • spim.fiji.datasetmanager.SlideBook6 (implements spim.fiji.datasetmanager.MultiViewDatasetDefinition)
  • spim.fiji.datasetmanager.SlideBook6Image
  • spim.fiji.datasetmanager.SlideBook6MetaData
  • process3d.Smooth
    • process3d.Smooth_ (implements ij.plugin.filter.PlugInFilter)
  • isosurface.SmoothControl
  • sc.fiji.snt.util.SNTColor
  • sc.fiji.snt.gui.SNTCommandFinder
  • sc.fiji.snt.event.SNTEvent
  • sc.fiji.snt.SNTPrefs
  • sc.fiji.snt.SNTUtils
  • levelsets.filter.Sobel (implements levelsets.filter.Filter)
  • mpicbg.imglib.cursor.special.SortedGrayLevelIteratorFactory<T> (implements mpicbg.imglib.Factory)
  • bdv.viewer.SourceAndConverter<T>
    • bdv.viewer.state.SourceState<T>
  • bdv.viewer.SourceGroup
  • bdv.viewer.state.SourceGroup
  • bdv.ui.sourcegrouptree.SourceGroupTreeModel (implements javax.swing.tree.TreeModel)
  • bdv.viewer.overlay.SourceInfoOverlayRenderer
    • bdv.viewer.overlay.BigWarpSourceOverlayRenderer
  • bdv.ui.SourcesTransferable (implements java.awt.datatransfer.Transferable)
  • bdv.ui.SourcesTransferable.SourceList
  • adt.Sparse3DByteArray (implements adt.Byte3DArray)
  • mpicbg.spim.registration.detection.descriptor.SparseCorrespondenceExtraction<M,T> (implements mpicbg.spim.registration.detection.descriptor.CorrespondenceExtraction<T>)
  • fiji.plugin.trackmate.tracking.sparselap.linker.SparseCostMatrix
  • levelsets.algorithm.SparseFieldLevelSet (implements levelsets.algorithm.StagedAlgorithm)
    • levelsets.algorithm.LevelSetImplementation
      • levelsets.algorithm.ActiveContours
      • levelsets.algorithm.GeodesicActiveContour
  • fiji.plugin.trackmate.tracking.sparselap.SparseLAPSegmentTracker (implements net.imglib2.algorithm.Benchmark, fiji.plugin.trackmate.tracking.SpotTracker)
  • spim.fiji.plugin.Specify_Calibration (implements ij.plugin.PlugIn)
  • spim.fiji.plugin.Specify_Calibration.Cal
  • spim.fiji.spimdata.explorer.popup.SpecifyCalibrationPopup.MyActionListener (implements java.awt.event.ActionListener)
  • vib.edge.SphereIterators
  • spimopener.SPIM_Opener (implements ij.plugin.PlugIn)
  • mpicbg.spim.io.SPIMConfiguration
  • spim.fiji.spimdata.SpimDataExample
  • mpicbg.spim.data.SpimDataExample
  • mpicbg.spim.data.SpimDataExample2
  • mpicbg.spim.data.SpimDataExample3
  • spimopener.SPIMExperiment
  • mpicbg.spim.fusion.SPIMImageFusion
    • mpicbg.spim.fusion.MappingFusionParalell
    • mpicbg.spim.fusion.MappingFusionParalellMaxWeight
    • mpicbg.spim.fusion.MappingFusionSequential
    • mpicbg.spim.fusion.MappingFusionSequentialDifferentOutput
    • mpicbg.spim.fusion.PreDeconvolutionFusion (implements mpicbg.spim.fusion.PreDeconvolutionFusionInterface)
    • mpicbg.spim.fusion.PreDeconvolutionFusionSequential (implements mpicbg.spim.fusion.PreDeconvolutionFusionInterface)
  • bdv.ij.export.SpimRegistrationSequence
  • SplineDeformationGenerator.SplineDeformationGenerator_ (implements ij.plugin.PlugIn)
  • hr.irb.fastRandomForest.SplitCriteria
  • ai.SplitFunction (implements java.io.Serializable)
    • ai.GiniFunction
    • ai.InformationGainFunction
  • fiji.util.SplitString
  • ai.Splitter (implements java.io.Serializable)
  • fiji.plugin.trackmate.features.spot.SpotAnalyzer.DummySpotAnalyzer<T> (implements fiji.plugin.trackmate.features.spot.SpotAnalyzer<T>)
  • fiji.plugin.trackmate.SpotCollection (implements net.imglib2.algorithm.MultiThreaded)
  • fiji.plugin.trackmate.visualization.SpotColorGenerator (implements fiji.plugin.trackmate.visualization.FeatureColorGenerator<K>)
  • fiji.plugin.trackmate.visualization.SpotColorGeneratorPerEdgeFeature (implements fiji.plugin.trackmate.visualization.FeatureColorGenerator<K>)
  • fiji.plugin.trackmate.visualization.SpotColorGeneratorPerTrackFeature (implements fiji.plugin.trackmate.visualization.FeatureColorGenerator<K>)
  • fiji.plugin.trackmate.features.spot.SpotContrastAndSNRAnalyzerFactory<T> (implements fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>)
  • fiji.plugin.trackmate.features.spot.SpotFitEllipseAnalyzerFactory<T> (implements fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>)
  • fiji.plugin.trackmate.action.SpotGaussianFitter.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.visualization.trackscheme.SpotIconGrabber<T>
  • fiji.plugin.trackmate.visualization.trackscheme.SpotImageUpdater
  • fiji.plugin.trackmate.features.spot.SpotIntensityMultiCAnalyzerFactory<T> (implements fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>)
  • fiji.plugin.trackmate.util.SpotNeighborhood<T> (implements net.imglib2.algorithm.neighborhood.Neighborhood<T>)
  • fiji.plugin.trackmate.util.SpotNeighborhoodCursor<T> (implements net.imglib2.Cursor<T>)
  • fiji.plugin.trackmate.SpotRoi
  • fiji.plugin.trackmate.features.spot.SpotShapeAnalyzerFactory<T> (implements fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>)
  • fiji.plugin.trackmate.util.SpotUtil
  • mpicbg.models.Spring (implements java.io.Serializable)
  • loci.plugins.config.SpringUtilities
  • imglib.ops.operator.unary.Sqr (implements imglib.ops.operator.UnaryOperator)
  • imglib.ops.operator.unary.Sqrt (implements imglib.ops.operator.UnaryOperator)
  • mpicbg.pointdescriptor.similarity.SquareDistance (implements mpicbg.pointdescriptor.similarity.SimilarityMeasure)
  • fiji.plugin.trackmate.tracking.sparselap.costfunction.SquareDistCostFunction (implements fiji.plugin.trackmate.tracking.sparselap.costfunction.CostFunction<K,J>)
  • fiji.plugin.trackmate.detection.util.SquareNeighborhood3x3<T> (implements net.imglib2.IterableInterval<T>, net.imglib2.Positionable)
  • fiji.plugin.trackmate.detection.util.SquareNeighborhoodCursor3x3<T> (implements net.imglib2.outofbounds.Bounded, net.imglib2.Cursor<T>)
  • SRM_ (implements ij.plugin.filter.PlugInFilter)
  • edu.utexas.clm.archipelago.network.shell.SSHNodeShell (implements edu.utexas.clm.archipelago.network.shell.NodeShell)
    • edu.utexas.clm.archipelago.network.shell.SocketNodeShell
  • Stack_Interleaver (implements ij.plugin.PlugIn)
  • Stack_Rotate (implements java.awt.event.AdjustmentListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, ij.plugin.PlugIn)
  • Stack_Sorter (implements ij.plugin.PlugIn)
  • Stack_Splitter (implements ij.plugin.PlugIn)
  • sc.fiji.i5d.plugin.Stack_to_Image5D (implements ij.plugin.PlugIn)
  • sc.fiji.multiKymograph.StackDifference_ (implements ij.plugin.PlugIn)
  • spim.fiji.datasetmanager.StackList (implements spim.fiji.datasetmanager.MultiViewDatasetDefinition)
    • spim.fiji.datasetmanager.StackListImageJ
    • spim.fiji.datasetmanager.StackListLOCI
  • spim.fiji.datasetmanager.StackList.Calibration
  • spim.fiji.datasetmanager.StackList.ViewSetupPrecursor
  • sc.fiji.hdf5.StackToHDF5GroupsMapping
  • sc.fiji.colourDeconvolution.StainMatrix
  • ini.trakem2.persistence.StaleFiles
  • ini.trakem2.persistence.StaleFiles.AlphaMaskPath (implements ini.trakem2.persistence.StaleFiles.Path)
  • ini.trakem2.persistence.StaleFiles.CoordinateTransformPath (implements ini.trakem2.persistence.StaleFiles.Path)
  • org.imagearchive.lsm.toolbox.StampUtils
  • sc.fiji.timelapse.StandardDeviation
  • vib.app.module.State
  • levelsets.ij.StateContainer
  • mpicbg.imglib.algorithm.roi.StatisticalOperation.SimpleCollectionStrategy<R> (implements mpicbg.imglib.algorithm.roi.StatisticalOperation.StatisticsCollectionStrategy<R>)
  • sc.fiji.coloc.gadgets.Statistics
  • ini.trakem2.utils.StdOutWindow
  • sc.fiji.coloc.algorithms.Stepper
    • sc.fiji.coloc.algorithms.BisectionStepper
    • sc.fiji.coloc.algorithms.SimpleStepper
  • Stitch_Image_Collection (implements ij.plugin.PlugIn)
  • Stitch_Image_Directory (implements ij.plugin.PlugIn)
  • Stitch_Image_Grid (implements ij.plugin.PlugIn)
  • Stitch_Image_Grid_Sequence (implements ij.plugin.PlugIn)
  • Stitch_Many_Images (implements ij.plugin.PlugIn)
  • Stitch_Many_Images.IntroItemListener (implements java.awt.event.ItemListener)
  • Stitch_Multiple_Series_File (implements ij.plugin.PlugIn)
  • Stitching_2D (implements ij.plugin.PlugIn)
  • Stitching_3D (implements ij.plugin.PlugIn)
  • plugin.Stitching_Grid (implements ij.plugin.PlugIn)
  • plugin.Stitching_Pairwise (implements ij.plugin.PlugIn)
  • mpicbg.stitching.StitchingParameters
  • ini.trakem2.imaging.StitchingTEM
  • ini.trakem2.imaging.StitchingTEM.PhaseCorrelationParam
  • customnode.STLLoader
  • QuickPALM.Stop_processing (implements ij.plugin.PlugIn)
  • Stopwatch
  • ini.trakem2.utils.StopWatch
  • sc.fiji.snt.plugin.ij1.Strahler (implements ij.gui.DialogListener, ij.plugin.PlugIn)
  • sc.fiji.snt.analysis.StrahlerAnalyzer
  • edu.utexas.clm.archipelago.example.Stress_Test (implements ij.plugin.PlugIn)
  • edu.utexas.clm.archipelago.example.Stress_Test.Stressor (implements java.util.concurrent.Callable<V>, java.io.Serializable)
  • mmorpho.StructureElement (implements mmorpho.Constants)
  • util.StupidLog
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.BooleanElement (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.BoundedDoubleElement (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.ColorElement (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.ColormapElement (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.DoubleElement (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.EnumElement<E> (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.FeatureElement (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.FontElement (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.IntElement (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.LabelElement (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • fiji.plugin.trackmate.gui.displaysettings.StyleElements.Separator (implements fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement)
  • mpicbg.imglib.algorithm.scalespace.SubpixelLocalization<T> (implements mpicbg.imglib.algorithm.Algorithm, mpicbg.imglib.algorithm.Benchmark, mpicbg.imglib.algorithm.MultiThreaded)
  • mpicbg.pointdescriptor.matcher.SubsetMatcher (implements mpicbg.pointdescriptor.matcher.Matcher)
    • mpicbg.pointdescriptor.matcher.ModelPriorSubsetMatcher
  • bdv.export.SubTaskProgressWriter (implements bdv.export.ProgressWriter)
  • imglib.ops.operator.binary.Subtract (implements imglib.ops.operator.BinaryOperator)
  • ini.trakem2.display.graphics.SubtractARGBComposite (implements java.awt.Composite)
  • ini.trakem2.imaging.filters.SubtractBackground (implements ini.trakem2.imaging.filters.IFilter)
  • imglib.ops.operator.unary.SubtractConstant (implements imglib.ops.operator.UnaryOperator)
  • mpicbg.imglib.algorithm.function.SubtractNorm<A> (implements mpicbg.imglib.function.Function<A,B,C>)
  • mpicbg.imglib.algorithm.function.SubtractNormReal<A,B,C> (implements mpicbg.imglib.function.Function<A,B,C>)
  • mpicbg.imglib.algorithm.function.SubtractReal<A,B,C> (implements mpicbg.imglib.function.Function<A,B,C>)
  • sc.fiji.snt.plugin.ij1.SummarizeSkeleton (implements ij.plugin.filter.PlugInFilter)
  • sc.fiji.snt.tracing.image.SupplierUtil
  • sc.fiji.snt.tracing.image.SupplierUtil.ArraySearchImageSupplier<V> (implements java.util.function.Supplier<T>)
  • sc.fiji.snt.tracing.image.SupplierUtil.ListSearchImageSupplier<V> (implements java.util.function.Supplier<T>)
  • sc.fiji.snt.tracing.image.SupplierUtil.MapSearchImageSupplier<V> (implements java.util.function.Supplier<T>)
  • SurfaceJ_ (implements ij.plugin.PlugIn)
  • features.Surfaceness_ (implements ij.plugin.PlugIn)
  • levelsets.filter.SUSAN (implements levelsets.filter.Filter)
  • sc.fiji.snt.gui.SwingSafeResult
  • SymMat
  • bdv.viewer.SynchronizedViewerState (implements bdv.viewer.ViewerState)
  • sc.fiji.hdf5.TableColumnAdjuster (implements java.beans.PropertyChangeListener, javax.swing.event.TableModelListener)
  • fiji.plugin.trackmate.visualization.table.TablePanel<O>
  • sc.fiji.snt.analysis.sholl.parsers.TabularParser (implements sc.fiji.snt.analysis.sholl.parsers.Parser)
  • ini.trakem2.display.Tag (implements java.lang.Comparable<T>)
  • ini.trakem2.parallel.TaskFactory<I,O>
    • ini.trakem2.parallel.CountingTaskFactory<I,O>
  • ini.trakem2.utils.TaskOnEDT<V> (implements java.util.concurrent.Future<V>)
  • edu.utexas.clm.archipelago.example.Test_Cluster (implements ij.plugin.PlugIn)
  • edu.utexas.clm.archipelago.example.Test_Cluster.NullCall (implements edu.utexas.clm.archipelago.compute.SerializableCallable<T>)
  • Test_Java3D (implements ij.plugin.PlugIn)
  • fiji.process.Test_JEP
  • sc.fiji.i5d.plugin.Test_Save (implements ij.plugin.PlugIn)
  • ij3d.Test_Single_Voxel (implements ij.plugin.PlugIn)
  • lineage.TestClassifier
  • features.TestComputeCurvatures_ (implements features.GaussianGenerationCallback, ij.plugin.PlugIn)
  • ini.trakem2.display.graphics.TestGraphicsSource (implements ini.trakem2.display.graphics.GraphicsSource)
  • fiji.util.TestKDTree
  • mpicbg.imglib.algorithm.kdtree.TestKDTree
  • mpicbg.pointdescriptor.test.TestPointDescriptor
  • math3d.Tetrahedron
  • ij.plugin.Text (implements ij.gui.DialogListener, ij.plugin.PlugIn)
    • Series_Labeler.ExtendedFonts
  • jRenderer3D.Text3D
  • mpicbg.spim.io.TextFileAccess
  • mpicbg.stitching.TextFileAccess
  • textureByRef.Texture_By_Ref (implements ij.ImageListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, ij.plugin.filter.PlugInFilter)
  • textureByRef.Texture_By_Ref_col (implements ij.ImageListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, ij.plugin.filter.PlugInFilter)
  • fiji.plugin.trackmate.io.TGMMImporter (implements net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.OutputAlgorithm<F>)
  • spim.fiji.plugin.ThinOut_Detections (implements ij.plugin.PlugIn)
  • jitk.spline.ThinPlateR2LogRSplineKernelTransform (implements java.io.Serializable)
  • mpicbg.ij.ThinPlateSplineMapping
  • mpicbg.trakem2.transform.ThinPlateSplineTransform (implements mpicbg.trakem2.transform.CoordinateTransform)
  • java.lang.Thread (implements java.lang.Runnable)
    • mpicbg.ij.integral.AbstractInteractiveBlockFilter.PaintThread
    • mpicbg.panorama.AbstractPanorama_View.AbstractMappingThread
    • mpicbg.trakem2.align.Align.ExtractFeaturesThread
    • mpicbg.trakem2.align.Align.MatchFeaturesAndFindModelThread
    • sc.fiji.balloonSegmentation.structure.Balloon
    • bigwarp.BigWarp.SolveThread
    • bigwarp.BigWarpExporter.ExportThread
    • mpicbg.ij.integral.BlockStatistics.RowIntegrator
    • ini.trakem2.utils.Bureaucrat
    • ini.trakem2.utils.CachingThread
      • ini.trakem2.display.AbstractOffscreenThread
      • ini.trakem2.display.AbstractRepaintThread
    • CPU_Meter.CPUMeter
    • lenscorrection.DistortionCorrectionTask.AppendCoordinateTransformThread
    • lenscorrection.DistortionCorrectionTask.SetCoordinateTransformThread
    • landmarks.FineTuneThread
    • ini.trakem2.display.GroupingMode.SimpleThread
      • ini.trakem2.display.GroupingMode.Painter
    • org.imagearchive.lsm.toolbox.gui.HtmlPageLoader
    • edu.utexas.clm.archipelago.util.InputStreamLogger
    • ini.trakem2.display.inspect.InspectPatchTrianglesMode.Inspector
    • edu.utexas.clm.archipelago.network.shell.ssh.JSchUtility
    • sc.fiji.snt.tracing.ManualTracerThread (implements sc.fiji.snt.tracing.SearchInterface)
    • mpicbg.ij.MappingThread
    • fiji.plugin.trackmate.util.OnRequestUpdater
    • fiji.plugin.trackmate.util.PainterThread
    • bdv.viewer.render.PainterThread (implements bdv.viewer.RequestRepaint)
    • stitching.model.PaintInvertibleCoordinateTransformThread
    • mpicbg.ij.PaintInvertibleCoordinateTransformThread
    • edu.utexas.clm.archipelago.compute.Scheduler (implements edu.utexas.clm.archipelago.listen.ProcessListener)
    • features.SigmaPalette
      • features.Sigma_Palette (implements ij.plugin.PlugIn)
    • sc.fiji.snt.gui.SigmaPalette
    • mpicbg.imglib.image.display.imagej.SliceTransformableExtraction<T> (implements mpicbg.imglib.multithreading.Stopable)
      • mpicbg.imglib.image.display.imagej.SliceTransformableExtractionFloat<T>
    • Stack_Rotate.MappingThread
    • sc.fiji.snt.tracing.TubularGeodesicsTracer (implements sc.fiji.snt.tracing.SearchInterface)
  • Thread_Killer (implements ij.plugin.PlugIn)
  • java.lang.ThreadGroup (implements java.lang.Thread.UncaughtExceptionHandler)
    • ini.trakem2.utils.BigBrother
  • spim.Threads
  • stacks.Three_Pane_Crop (implements ij.plugin.PlugIn)
  • stacks.ThreePaneContainer_ (implements ij.plugin.PlugIn)
  • stacks.ThreePanes (implements stacks.PaneOwner)
    • stacks.ThreePaneCrop
  • stacks.ThreePanes_ (implements ij.plugin.PlugIn)
  • vib.transforms.Threshold
  • fiji.plugin.trackmate.detection.ThresholdDetector<T> (implements net.imglib2.algorithm.MultiThreaded, fiji.plugin.trackmate.detection.SpotDetector<T>)
  • fiji.plugin.trackmate.detection.ThresholdDetectorFactory<T> (implements fiji.plugin.trackmate.detection.SpotDetectorFactory<T>)
    • fiji.plugin.trackmate.detection.MaskDetectorFactory<T>
  • distance.Thresholded (implements distance.PixelPairs)
  • vib.segment.Thresholder
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • util.BatchOpener.ImageLoaderException
      • util.BatchOpener.NoSuchChannelException
      • mpicbg.spim.io.ConfigurationParserException
      • mpicbg.models.IllDefinedDataPointsException
      • mpicbg.imglib.exception.ImgLibException
      • sc.fiji.coloc.algorithms.MissingPreconditionException
      • landmarks.NamedPointSet.PointsFileException
      • stitching.model.NoninvertibleModelException
      • mpicbg.models.NoninvertibleModelException
      • mpicbg.pointdescriptor.exception.NoSuitablePointsException
      • stitching.model.NotEnoughDataPointsException
      • mpicbg.models.NotEnoughDataPointsException
      • java.lang.RuntimeException
        • pal.math.ConjugateDirectionSearch.OptimizationError
        • spim.vecmath.SingularMatrixException
      • edu.utexas.clm.archipelago.exception.ShellExecutionException
        • edu.utexas.clm.archipelago.exception.AuthenticationException
      • mpicbg.spim.data.SpimDataException
        • mpicbg.spim.data.SpimDataInstantiationException
        • mpicbg.spim.data.SpimDataIOException
  • loci.plugins.in.ThumbLoader (implements java.lang.Runnable)
  • loci.plugins.in.ThumbLoader.SeriesInfo (implements java.lang.Comparable<T>)
  • fiji.util.TicToc
  • loci.plugins.config.TiffDelegateWidgets (implements loci.plugins.config.IFormatWidgets, java.awt.event.ItemListener)
  • mpicbg.models.Tile<M> (implements java.io.Serializable)
    • mpicbg.trakem2.align.AbstractAffineTile2D<A>
      • mpicbg.trakem2.align.AffineTile2D
      • mpicbg.trakem2.align.GenericAffineTile2D<A>
      • mpicbg.trakem2.align.RigidTile2D
      • mpicbg.trakem2.align.SimilarityTile2D
      • mpicbg.trakem2.align.TranslationTile2D
    • mpicbg.stitching.ImagePlusTimePoint (implements java.lang.Comparable<T>)
    • mpicbg.spim.mpicbg.TileSPIM<M>
  • stitching.model.Tile
    • stitching.ImageInformation (implements java.lang.Comparable<T>)
  • mpicbg.models.TileConfiguration (implements java.io.Serializable)
    • mpicbg.trakem2.align.TileConfiguration
    • mpicbg.spim.mpicbg.TileConfigurationPhaseCorrelation
    • mpicbg.stitching.TileConfigurationStitching
  • stitching.model.TileConfiguration
  • mpicbg.spim.mpicbg.TileConfigurationSPIM
  • mpicbg.models.TileUtil
  • mpicbg.ij.integral.Tilt
  • Time_Stamper (implements ij.plugin.filter.ExtendedPlugInFilter)
  • fiji.plugin.timelapsedisplay.TimeLapseDisplay
  • spim.process.interestpointregistration.registrationstatistics.TimeLapseDisplay
  • view4d.Timeline
  • view4d.TimelineGUI (implements java.awt.event.ActionListener, java.awt.event.KeyListener)
  • mpicbg.spim.data.sequence.TimePoints
    • mpicbg.spim.data.sequence.TimePointsPattern
  • org.imagearchive.lsm.toolbox.info.scaninfo.Timer
  • mpicbg.util.Timer
  • java.util.TimerTask (implements java.lang.Runnable)
    • spim.fiji.plugin.apply.BigDataViewerTransformationWindow.BDVChecker
    • fsalign.FolderWatcher
  • org.imagearchive.lsm.toolbox.info.TimeStamps
  • vib.TissueStatistics_ (implements ij.plugin.filter.PlugInFilter)
  • vib.app.module.TissueStatistics.Statistics
  • fiji.plugin.trackmate.util.TMUtils
  • fiji.plugin.trackmate.io.TmXmlKeys
  • fiji.plugin.trackmate.io.TmXmlReader
  • fiji.plugin.trackmate.io.TmXmlWriter
  • ToAST25_ (implements ij.measure.Measurements, ij.plugin.filter.PlugInFilter)
  • ToAST25_.particle
  • spim.fiji.plugin.Toggle_Cluster_Options (implements ij.plugin.PlugIn)
  • bigwarp.transforms.TpsTransformSolver (implements bigwarp.transforms.TransformSolver<T>)
  • org.imagearchive.lsm.toolbox.info.scaninfo.Track
  • fiji.plugin.trackmate.action.TrackBranchAnalysis.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • fiji.plugin.trackmate.tracking.TrackerKeys
  • fiji.plugin.trackmate.features.track.TrackIndexAnalyzer (implements fiji.plugin.trackmate.features.track.TrackAnalyzer)
  • fiji.plugin.trackmate.TrackMate (implements net.imglib2.algorithm.Algorithm, net.imglib2.algorithm.Benchmark, org.scijava.Cancelable, net.imglib2.algorithm.MultiThreaded, org.scijava.Named)
  • fiji.plugin.trackmate.TrackMatePlugIn (implements ij.plugin.PlugIn)
    • fiji.plugin.trackmate.ManualTrackingPlugIn
    • fiji.plugin.trackmate.TrackMateRunner
  • fiji.plugin.trackmate.gui.wizard.TrackMateWizardSequence (implements fiji.plugin.trackmate.gui.wizard.WizardSequence)
  • fiji.plugin.trackmate.TrackModel
  • fiji.plugin.trackmate.features.track.TrackMotilityAnalyzer (implements fiji.plugin.trackmate.features.track.TrackAnalyzer)
  • fiji.plugin.trackmate.util.TrackNavigator
  • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeActions
  • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeFactory (implements fiji.plugin.trackmate.visualization.ViewFactory)
  • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeKeyboardHandler
  • fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeStylist
  • trainableSegmentation.Trainable_Segmentation (implements ij.plugin.PlugIn)
  • edu.utexas.clm.archipelago.ijsupport.TrakEM2Archipelago (implements ini.trakem2.plugin.TPlugIn)
  • ini.trakem2.tree.TrakEM2MLParser
  • edu.utexas.clm.reconstructreader.trakem2.Trakem2Translator (implements java.lang.Runnable)
  • sc.fiji.i5d.plugin.Transfer_Channel_Settings (implements ij.plugin.PlugIn)
  • ini.trakem2.tree.TransferableNode (implements java.awt.datatransfer.Transferable)
  • javax.swing.TransferHandler (implements java.io.Serializable)
    • loci.plugins.shortcut.ShortcutTransferHandler
    • bdv.ui.sourcegrouptree.SourceGroupTree.SourceGroupTreeTransferHandler
  • Transform_Roi (implements ij.plugin.PlugIn)
  • Transform_SpringMesh (implements java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, ij.plugin.PlugIn)
  • register_virtual_stack.Transform_Virtual_Stack_MT (implements ij.plugin.PlugIn)
  • spim.vecmath.Transform3D
  • bunwarpj.Transformation
  • landmarks.TransformationAttempt (implements pal.math.MultivariateFunction)
  • spim.process.interestpointregistration.TransformationModel
  • ini.trakem2.display.TransformationStep (implements ini.trakem2.utils.History.Step<T>)
  • bdv.tools.boundingbox.TransformedBoxEditor
  • bdv.tools.boundingbox.TransformedBoxOverlay (implements bdv.viewer.OverlayRenderer, bdv.viewer.TransformListener<A>)
  • bdv.tools.boundingbox.TransformedBoxOverlaySource
  • bdv.tools.boundingbox.TransformedBoxSelectionDialog.Result (implements bdv.tools.boundingbox.TransformedBox)
  • vib.TransformedImage
  • vib.TransformedImage.Iterator (implements java.util.Iterator<E>)
  • bdv.tools.boundingbox.TransformedRealBoxSelectionDialog.Result (implements bdv.tools.boundingbox.TransformedBox)
  • spim.process.fusion.weights.TransformedRealRandomAccessibleInterval<T> (implements net.imglib2.RandomAccessibleInterval<T>)
  • bdv.tools.transformation.TransformedSource<T> (implements bdv.viewer.render.MipmapOrdering, bdv.viewer.Source<T>)
  • bdv.TransformEventHandler2D (implements bdv.TransformEventHandler)
  • bdv.TransformEventHandler3D (implements bdv.TransformEventHandler)
  • spim.process.fusion.deconvolution.TransformInput (implements java.util.concurrent.Callable<V>)
  • spim.process.fusion.deconvolution.TransformInputAndWeights (implements java.util.concurrent.Callable<V>)
  • jitk.spline.TransformInverseGradientDescent
  • math3d.TransformIO
    • math3d.Transform_IO (implements ij.plugin.PlugIn)
  • mpicbg.ij.TransformMapping<T> (implements mpicbg.ij.InverseMapping<T>)
  • mpicbg.models.TransformMesh (implements mpicbg.models.InvertibleCoordinateTransform)
    • mpicbg.models.CoordinateTransformMesh
    • mpicbg.models.MovingLeastSquaresMesh<M>
      • mpicbg.models.ElasticMovingLeastSquaresMesh<M>
    • mpicbg.models.SpringMesh
    • mpicbg.trakem2.transform.TransformMesh
  • mpicbg.trakem2.transform.TransformMeshMappingWithMasks.ImageProcessorWithMasks
  • mpicbg.models.Transforms
  • mpicbg.util.TransformUtils
  • spim.process.fusion.deconvolution.TransformWeights (implements java.util.concurrent.Callable<V>)
  • sc.fiji.snt.Tree (implements sc.fiji.snt.TreeProperties)
  • ini.trakem2.display.Tree.MeasurePathDistance<I>
  • ini.trakem2.display.Tree.MeshData
  • ini.trakem2.display.Tree.Pair
    • ini.trakem2.display.Tree.NodePath
      • ini.trakem2.display.Tree.MeasurementPair
  • ini.trakem2.display.TreeConnectorsView
  • treeline.TreelineGraphEditor (implements ini.trakem2.plugin.TPlugIn)
  • sc.fiji.snt.analysis.sholl.parsers.TreeParser (implements sc.fiji.snt.analysis.sholl.parsers.Parser)
  • math3d.Triangle
  • Triangle_Algorithm (implements ij.plugin.filter.PlugInFilter)
  • delaunay.Triangulation
    • delaunay.DelaunayTriangulation
  • fiji.plugin.trackmate.action.TrimNotVisibleAction.Factory (implements fiji.plugin.trackmate.action.TrackMateActionFactory)
  • mpicbg.trakem2.util.Triple<A,B,C> (implements java.io.Serializable)
  • bdv.util.TripleBuffer<T>
  • bdv.util.TripleBuffer.ReadableBuffer<T>
  • features.Tubeness_ (implements ij.plugin.PlugIn)
  • spim.vecmath.Tuple3d (implements java.lang.Cloneable, java.io.Serializable)
    • spim.vecmath.Point3d (implements java.io.Serializable)
    • spim.vecmath.Vector3d (implements java.io.Serializable)
  • org.scijava.vecmath.Tuple3f (implements java.lang.Cloneable, java.io.Serializable)
    • org.scijava.vecmath.Point3f (implements java.io.Serializable)
      • customnode.FullInfoMesh.Vertex
  • spim.vecmath.Tuple3f (implements java.lang.Cloneable, java.io.Serializable)
    • spim.vecmath.Color3f (implements java.io.Serializable)
    • spim.vecmath.Point3f (implements java.io.Serializable)
    • spim.vecmath.Vector3f (implements java.io.Serializable)
  • spim.vecmath.Tuple3i (implements java.lang.Cloneable, java.io.Serializable)
    • spim.vecmath.Point3i (implements java.io.Serializable)
  • spim.vecmath.Tuple4d (implements java.lang.Cloneable, java.io.Serializable)
    • spim.vecmath.Point4d (implements java.io.Serializable)
    • spim.vecmath.Quat4d (implements java.io.Serializable)
    • spim.vecmath.Vector4d (implements java.io.Serializable)
  • spim.vecmath.Tuple4f (implements java.lang.Cloneable, java.io.Serializable)
    • spim.vecmath.Point4f (implements java.io.Serializable)
    • spim.vecmath.Quat4f (implements java.io.Serializable)
    • spim.vecmath.Vector4f (implements java.io.Serializable)
  • net.imglib2.TwinCursor<T> (implements net.imglib2.Cursor<T>, net.imglib2.PairIterator<T>)
  • Two_Point_Correlation (implements ij.plugin.filter.PlugInFilter)
  • distance.TwoValues (implements distance.PixelPairs)
  • mpicbg.imglib.type.TypeConverter
  • mpicbg.imglib.type.TypeImpl<T> (implements mpicbg.imglib.type.Type<T>)
    • mpicbg.imglib.type.label.BasePairBitType (implements mpicbg.imglib.type.BasePairType<T>)
    • mpicbg.imglib.type.label.BasePairCharType (implements mpicbg.imglib.type.BasePairType<T>)
    • mpicbg.imglib.type.numeric.complex.ComplexTypeImpl<T> (implements mpicbg.imglib.type.numeric.ComplexType<T>)
      • mpicbg.imglib.type.numeric.complex.ComplexDoubleType (implements mpicbg.imglib.type.numeric.ComplexType<T>)
      • mpicbg.imglib.type.numeric.complex.ComplexFloatType (implements mpicbg.imglib.type.numeric.ComplexType<T>)
      • mpicbg.imglib.type.numeric.real.RealTypeImpl<T> (implements mpicbg.imglib.type.numeric.RealType<T>)
        • mpicbg.imglib.type.numeric.real.DoubleType (implements mpicbg.imglib.type.numeric.ExponentialMathType<T>, mpicbg.imglib.type.numeric.RealType<T>)
        • mpicbg.imglib.type.numeric.real.FloatType (implements mpicbg.imglib.type.numeric.RealType<T>)
        • mpicbg.imglib.type.numeric.integer.IntegerTypeImpl<T> (implements mpicbg.imglib.type.numeric.IntegerType<T>)
          • mpicbg.imglib.type.logic.BitType (implements mpicbg.imglib.type.BooleanType<T>, mpicbg.imglib.type.numeric.RealType<T>)
          • mpicbg.imglib.type.numeric.integer.GenericByteType<T>
            • mpicbg.imglib.type.numeric.integer.ByteType
            • mpicbg.imglib.type.numeric.integer.UnsignedByteType
          • mpicbg.imglib.type.numeric.integer.GenericIntType<T>
            • mpicbg.imglib.type.numeric.integer.IntType
            • mpicbg.imglib.type.numeric.integer.UnsignedIntType
          • mpicbg.imglib.type.numeric.integer.GenericShortType<T>
            • mpicbg.imglib.type.numeric.integer.ShortType
            • mpicbg.imglib.type.numeric.integer.UnsignedShortType
          • mpicbg.imglib.type.numeric.integer.LongType
          • mpicbg.imglib.type.numeric.integer.Unsigned12BitType
    • mpicbg.imglib.type.label.FakeType
    • mpicbg.imglib.labeling.LabelingType<T> (implements mpicbg.imglib.type.Type<T>)
    • mpicbg.imglib.type.numeric.RGBALegacyType (implements mpicbg.imglib.type.numeric.NumericType<T>)
  • customnode.u3d.U3DExporter
  • customnode.u3d.U3DExporter.Mesh
  • bdv.ui.UIUtils
  • sc.fiji.snt.filter.UnaryComputerOpCellLoader<T,S,R> (implements net.imglib2.cache.img.CellLoader<T>)
  • imglib.ops.function.p1.UnaryOperatorFunction<T> (implements imglib.ops.function.RealFunction<T>)
  • fiji.plugin.trackmate.visualization.UniformSpotColorGenerator (implements fiji.plugin.trackmate.visualization.FeatureColorGenerator<K>)
  • fiji.plugin.trackmate.visualization.UniformTrackColorGenerator (implements fiji.plugin.trackmate.visualization.TrackColorGenerator)
  • pal.math.UnivariateMinimum
  • ij3d.UniverseSettings
  • ij3d.UniverseSynchronizer
  • stacks.Unpack_To_PNG (implements ij.plugin.PlugIn)
  • adt.Unsparse3DByteArray (implements adt.Byte3DArray)
  • loci.plugins.Updater (implements ij.plugin.PlugIn)
  • fiji.Upload_Image_To_Wiki (implements ij.plugin.filter.PlugInFilter)
  • pal.math.UrnModel (implements java.io.Serializable)
  • ini.trakem2.display.paint.USHORTPaint (implements java.awt.Paint)
  • histogram2.Util
  • mpicbg.util.Util
  • mpicbg.imglib.util.Util
  • script.imglib.math.fn.Util
  • mpicbg.panorama.Util
  • mpicbg.ij.util.Util
  • mpicbg.ij.clahe.Util
  • bdv.img.hdf5.Util
  • mpicbg.trakem2.align.Util
  • ini.trakem2.vector.Util
  • ini.trakem2.vector.Util.CircularSequence
  • mpicbg.trakem2.align.Util.Features (implements java.io.Serializable)
  • mpicbg.trakem2.align.Util.PointMatches (implements java.io.Serializable)
  • edu.utexas.clm.reconstructreader.Utils
  • org.siox.util.Utils
  • trainableSegmentation.utils.Utils
  • oldsegmenters.Utils
  • mpicbg.imglib.cursor.special.Utils
  • ini.trakem2.utils.Utils (implements ij.plugin.PlugIn)
  • edu.utexas.clm.reconstructreader.Utils.ReconstructSectionIndexComparator (implements java.util.Comparator<T>)
  • oldsegmenters.Utils.Spiral (implements java.util.Iterator<E>)
  • org.janelia.vaa3d.reader.V3dRawImageStream
  • Vaa3d_Writer (implements ij.plugin.PlugIn)
  • org.janelia.vaa3d.reader.Vaa3dPbdToRaw
  • imglib.ops.condition.ValueGreaterThan<T> (implements imglib.ops.condition.Condition<T>)
  • imglib.ops.condition.ValueLessThan<T> (implements imglib.ops.condition.Condition<T>)
  • sc.fiji.coloc.results.ValueResult
  • ini.trakem2.imaging.filters.ValueToNoise (implements ini.trakem2.imaging.filters.IFilter)
  • ini.trakem2.utils.Vector3
  • ini.trakem2.display.VectorDataTransform
  • ini.trakem2.display.VectorDataTransform.ROITransform
  • ini.trakem2.vector.VectorString2D (implements ini.trakem2.vector.VectorString)
  • ini.trakem2.vector.VectorString3D (implements ini.trakem2.vector.VectorString)
  • spim.Version
  • mpicbg.spim.data.Version
  • sc.fiji.analyzeSkeleton.Vertex
  • ini.trakem2.analysis.Vertex<T>
  • sc.fiji.analyzeSkeleton.ita.VertexUtils
  • sc.fiji.snt.annotation.VFBUtils
  • vib.VIB
  • VIB_Protocol (implements java.awt.event.ActionListener, ij.plugin.PlugIn)
  • sc.fiji.hdf5.Vibez_Validate (implements ij.plugin.PlugIn)
  • video.VideoStack
  • ij3d.ViewAdjuster
  • mpicbg.spim.registration.ViewDataBeads (implements java.lang.Comparable<T>)
  • sc.fiji.snt.viewer.Viewer3D
  • sc.fiji.snt.viewer.Viewer3D.Utils
  • bdv.viewer.ViewerOptions
    • bdv.gui.BigWarpViewerOptions
  • bdv.viewer.ViewerOptions.Values
  • bdv.viewer.ViewerPanel.MouseCoordinateListener (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
  • bdv.viewer.ViewerPanel.RenderThreadFactory (implements java.util.concurrent.ThreadFactory)
  • mpicbg.spim.registration.bead.error.ViewErrorPairWise
  • mpicbg.spim.registration.bead.error.ViewErrorStatistics
  • bdv.viewer.state.ViewerState
  • mpicbg.spim.data.sequence.ViewId (implements java.lang.Comparable<T>)
    • mpicbg.spim.data.generic.sequence.BasicViewDescription<V>
      • mpicbg.spim.data.sequence.ViewDescription
    • spim.fiji.spimdata.interestpoints.ViewInterestPointLists
    • mpicbg.spim.data.registration.ViewRegistration
  • mpicbg.spim.data.sequence.ViewIdUtils
    • mpicbg.spim.data.registration.ViewRegistrationsUtils
  • spim.fiji.spimdata.interestpoints.ViewInterestPoints
  • bdv.img.hdf5.ViewLevelId (implements java.lang.Comparable<T>)
  • ij3d.behaviors.ViewPlatformTransformer
    • ij3d.behaviors.InteractiveViewPlatformTransformer
  • mpicbg.spim.data.registration.ViewRegistrations
  • mpicbg.spim.data.generic.base.ViewSetupAttributes
  • spim.fiji.spimdata.explorer.ViewSetupExplorer<AS,X>
  • spim.fiji.spimdata.explorer.ViewSetupExplorerInfoBox<AS>
  • mpicbg.spim.data.sequence.ViewSetups
  • spim.fiji.spimdata.ViewSetupUtils
  • mpicbg.spim.registration.ViewStructure
  • mpicbg.spim.data.registration.ViewTransformAffine (implements mpicbg.spim.data.registration.ViewTransform)
  • fiji.plugin.trackmate.visualization.ViewUtils
  • sc.fiji.i5d.plugin.Virtual_Image5D_Opener (implements ij.plugin.PlugIn)
  • bdv.util.VirtualChannels
  • mpicbg.pointdescriptor.test.VirtualPointNode<P> (implements fiji.util.node.Leaf<N>)
  • bdv.img.virtualstack.VirtualStackImageLoader<T,V,A> (implements mpicbg.spim.data.generic.sequence.TypedBasicImgLoader<T>, bdv.ViewerImgLoader)
  • org.scijava.java3d.VirtualUniverse
    • org.scijava.java3d.utils.universe.SimpleUniverse
      • ij3d.DefaultUniverse (implements ij3d.behaviors.BehaviorCallback)
        • ij3d.DefaultAnimatableUniverse
          • ij3d.Image3DUniverse
  • bdv.viewer.VisibilityAndGrouping
  • bdv.viewer.VisibilityAndGrouping.Event
  • Visual_Grep (implements ij.plugin.filter.PlugInFilter)
  • mpicbg.spim.vis3d.VisualizationFunctions
  • mpicbg.spim.vis3d.VisualizationSketchTikZ
  • spim.fiji.plugin.Visualize_Detections (implements ij.plugin.PlugIn)
  • spim.fiji.plugin.Visualize_Detections.Params
  • mpicbg.spim.vis3d.VisualizeBeads
  • spim.fiji.spimdata.explorer.popup.VisualizeDetectionsPopup.MyActionListener (implements java.awt.event.ActionListener)
  • mpicbg.imglib.function.VoidConverter<A> (implements mpicbg.imglib.function.Converter<A,B>)
  • bdv.img.cache.VolatileGlobalCellCache (implements bdv.cache.CacheControl)
  • bdv.img.cache.VolatileGlobalCellCache.Key
  • bdv.viewer.render.VolatileHierarchyProjector<A,B> (implements bdv.viewer.render.VolatileProjector)
  • bdv.util.volatiles.VolatileRandomAccessibleView<T,V> (implements net.imglib2.RandomAccessible<T>, bdv.util.volatiles.VolatileView<T,V>)
  • bdv.util.volatiles.VolatileTypeMatcher
  • bdv.util.volatiles.VolatileViewData<T,V>
  • bdv.util.volatiles.VolatileViews
  • ij3d.Volume
    • ij3d.AreaListVolume
    • ini.trakem2.utils.ImgLibVolume<T>
    • voltex.VoltexVolume
      • voltex.Mask
  • fiji.plugin.volumeviewer.Volume
  • volumeCalculator.Volume_Calculator (implements ij.plugin.filter.PlugInFilter)
  • textureByRef.Volume_Editor (implements ij.plugin.filter.PlugInFilter)
  • Volume_Reconstructor_ (implements ij.plugin.PlugIn)
  • fiji.plugin.volumeviewer.Volume_Viewer (implements ij.plugin.PlugIn)
  • ij3d.Volume.ByteImage (implements ij3d.Volume.InputImage)
  • ij3d.Volume.ByteLoader (implements ij3d.Volume.Loader)
    • ij3d.Volume.AverageByteLoader
  • ij3d.Volume.IntImage (implements ij3d.Volume.InputImage)
  • ij3d.Volume.IntLoader (implements ij3d.Volume.Loader)
    • ij3d.Volume.SaturatedIntLoader
  • VolumeJ_ (implements ij.plugin.PlugIn)
  • octree.VolumeOctree (implements ij3d.AxisConstants, ij3d.UniverseListener)
  • voltex.VolumeRenderer (implements ij3d.AxisConstants)
    • orthoslice.MultiOrthoslice
    • orthoslice.Orthoslice
  • volumeCalculator.Volumes
  • ai.VotesCollector (implements java.util.concurrent.Callable<V>)
  • hr.irb.fastRandomForest.VotesCollector (implements java.util.concurrent.Callable<V>)
  • hr.irb.fastRandomForest.VotesCollectorDataCache (implements java.util.concurrent.Callable<V>)
  • sc.fiji.multiKymograph.WalkingAverage_ (implements ij.plugin.PlugIn)
  • sc.fiji.coloc.results.Warning
  • bdv.img.WarpedSource<T> (implements bdv.viewer.render.MipmapOrdering, bdv.viewer.Source<T>)
  • trainableSegmentation.metrics.WarpingResults
  • bigwarp.source.WarpMagnitudeSource<T> (implements bdv.viewer.Source<T>)
  • bigwarp.WarpVisFrame.MyChangeListener (implements javax.swing.event.ChangeListener)
  • sc.fiji.balloonSegmentation.utils.Watershed
  • mpicbg.imglib.algorithm.labeling.Watershed
  • mpicbg.imglib.algorithm.labeling.Watershed.PixelIntensity<T> (implements java.lang.Comparable<T>)
  • trainableSegmentation.utils.WatershedTransform2D
  • customnode.WavefrontExporter
  • customnode.WavefrontLoader
  • fiji.scripting.Weaver
  • spim.process.fusion.deconvolution.WeightNormalizer
  • trainableSegmentation.Weka_Segmentation (implements ij.plugin.PlugIn)
  • trainableSegmentation.WekaSegmentation
  • fiji.plugin.trackmate.visualization.WholeTrackFeatureColorGenerator (implements fiji.plugin.trackmate.visualization.FeatureColorGenerator<K>)
  • fiji.Wiki_Editor (implements java.awt.event.ActionListener, ij.plugin.PlugIn)
  • java.awt.event.WindowAdapter (implements java.awt.event.WindowFocusListener, java.awt.event.WindowListener, java.awt.event.WindowStateListener)
    • bigwarp.BigwarpFocusListener
    • mpicbg.spim.segmentation.InteractiveDoG.FrameListener
    • mpicbg.spim.segmentation.InteractiveIntegral.FrameListener
  • util.WindowHelpers
  • loci.plugins.util.WindowTools
  • fiji.plugin.trackmate.gui.wizard.WizardController
  • fiji.plugin.trackmate.gui.wizard.WizardPanelDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.ActionChooserDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.ChooseDetectorDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.ChooseTrackerDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.ConfigureViewsDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.ExecuteDetectionDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.ExecuteTrackingDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.GrapherDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.InitFilterDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.LogPanelDescriptor2
    • fiji.plugin.trackmate.gui.wizard.descriptors.SomeDialogDescriptor
      • fiji.plugin.trackmate.LoadTrackMatePlugIn (implements ij.plugin.PlugIn)
      • fiji.plugin.trackmate.gui.wizard.descriptors.SaveDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.SpotDetectorDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.SpotFilterDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.SpotTrackerDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.StartDialogDescriptor
    • fiji.plugin.trackmate.gui.wizard.descriptors.TrackFilterDescriptor
  • ini.trakem2.utils.Worker (implements java.lang.Runnable)
    • ini.trakem2.utils.Worker.Task
  • bdv.spimdata.WrapBasicImgLoader (implements bdv.ViewerImgLoader)
  • net.imglib2.realtransform.Wrapped2DTransformAs3D (implements net.imglib2.realtransform.InvertibleRealTransform)
  • bigwarp.transforms.WrappedCoordinateTransform (implements net.imglib2.realtransform.InvertibleRealTransform)
  • bdv.util.WrappedList<E> (implements java.util.List<E>)
  • java.io.Writer (implements java.lang.Appendable, java.io.Closeable, java.io.Flushable)
    • java.io.PrintWriter
      • fiji.plugin.trackmate.Logger
        • fiji.plugin.trackmate.Logger.SlaveLogger
        • fiji.plugin.trackmate.Logger.StringBuilderLogger
        • fiji.plugin.trackmate.util.LogRecorder
    • loci.plugins.config.TextAreaWriter
  • bdv.export.WriteSequenceToHdf5
  • bdv.export.n5.WriteSequenceToN5
  • sc.fiji.cellCounter.WriteXML
  • edu.utexas.clm.archipelago.util.XCErrorAdapter (implements edu.utexas.clm.archipelago.listen.TransceiverExceptionListener)
  • jitk.spline.XfmUtils
  • ini.trakem2.io.XMLFileFilter (implements java.io.FilenameFilter)
  • util.XMLFunctions
  • mpicbg.spim.io.XMLFunctions
  • mpicbg.spim.data.XmlHelpers
  • bdv.img.catmaid.XmlIoCatmaidImageLoader (implements mpicbg.spim.data.generic.sequence.XmlIoBasicImgLoader<T>)
  • spim.fiji.spimdata.imgloaders.XmlIoDHMImgLoader (implements mpicbg.spim.data.generic.sequence.XmlIoBasicImgLoader<T>)
  • mpicbg.spim.data.generic.base.XmlIoEntity<T>
    • mpicbg.spim.data.generic.sequence.XmlIoBasicViewSetup<T>
    • mpicbg.spim.data.generic.base.XmlIoNamedEntity<T>
      • mpicbg.spim.data.sequence.XmlIoAngle
      • mpicbg.spim.data.sequence.XmlIoChannel
      • mpicbg.spim.data.sequence.XmlIoIllumination
      • mpicbg.spim.data.sequence.XmlIoTile
  • bdv.img.hdf5.XmlIoHdf5ImageLoader (implements mpicbg.spim.data.generic.sequence.XmlIoBasicImgLoader<T>)
  • bdv.img.imaris.XmlIoImarisImageLoader (implements mpicbg.spim.data.generic.sequence.XmlIoBasicImgLoader<T>)
  • spim.fiji.spimdata.imgloaders.XmlIoLightSheetZ1ImgLoader (implements mpicbg.spim.data.generic.sequence.XmlIoBasicImgLoader<T>)
  • spim.fiji.spimdata.imgloaders.XmlIoMicroManagerImgLoader (implements mpicbg.spim.data.generic.sequence.XmlIoBasicImgLoader<T>)
  • bdv.img.n5.XmlIoN5ImageLoader (implements mpicbg.spim.data.generic.sequence.XmlIoBasicImgLoader<T>)
  • bdv.img.openconnectome.XmlIoOpenConnectomeImageLoader (implements mpicbg.spim.data.generic.sequence.XmlIoBasicImgLoader<T>)
  • bdv.img.remote.XmlIoRemoteImageLoader (implements mpicbg.spim.data.generic.sequence.XmlIoBasicImgLoader<T>)
  • mpicbg.spim.data.generic.base.XmlIoSingleton<T>
    • mpicbg.spim.data.generic.sequence.XmlIoAbstractSequenceDescription<V,T>
      • mpicbg.spim.data.sequence.XmlIoSequenceDescription
    • mpicbg.spim.data.generic.XmlIoAbstractSpimData<S,T>
      • mpicbg.spim.data.XmlIoSpimData
      • spim.fiji.spimdata.XmlIoSpimData2
      • bdv.spimdata.XmlIoSpimDataMinimal
    • spim.fiji.spimdata.boundingbox.XmlIoBoundingBoxes
    • mpicbg.spim.data.generic.base.XmlIoEntityMap<T>
      • mpicbg.spim.data.generic.sequence.XmlIoBasicViewSetups<T>
        • mpicbg.spim.data.sequence.XmlIoViewSetups
    • mpicbg.spim.data.sequence.XmlIoMissingViews
    • mpicbg.spim.data.sequence.XmlIoTimePoints
    • spim.fiji.spimdata.interestpoints.XmlIoViewInterestPoints
    • mpicbg.spim.data.registration.XmlIoViewRegistrations
  • spim.fiji.spimdata.imgloaders.XmlIoSlideBook6ImgLoader (implements mpicbg.spim.data.generic.sequence.XmlIoBasicImgLoader<T>)
  • bdv.spimdata.legacy.XmlIoSpimDataMinimalLegacy
  • spim.fiji.spimdata.imgloaders.XmlIoStackImgLoader<T> (implements mpicbg.spim.data.generic.sequence.XmlIoBasicImgLoader<T>)
    • spim.fiji.spimdata.imgloaders.XmlIoStackImgLoaderIJ
    • spim.fiji.spimdata.imgloaders.XmlIoStackImgLoaderLOCI
  • bdv.tools.transformation.XmlIoTransformedSources
  • bdv.viewer.state.XmlIoViewerState
  • mpicbg.spim.data.registration.XmlIoViewRegistration
  • mpicbg.spim.data.registration.XmlIoViewTransform
  • mpicbg.spim.data.XmlKeys
  • spim.fiji.spimdata.boundingbox.XmlKeysBoundingBox
  • spim.fiji.spimdata.interestpoints.XmlKeysInterestPoints
  • bigwarp.loader.XMLLoader (implements bigwarp.loader.Loader)
  • ini.trakem2.persistence.XMLOptions
  • spimopener.XMLReader
  • spim.process.fusion.export.XMLTIFFImgTitler (implements spim.process.fusion.export.ImgTitler)
  • imglib.ops.operator.binary.Xor (implements imglib.ops.operator.BinaryOperator)
  • imglib.ops.operator.unary.XorConstant (implements imglib.ops.operator.UnaryOperator)
  • sc.fiji.io.XPM_Writer (implements ij.plugin.PlugIn)
  • sc.fiji.i5d.plugin.z_Image5D_test (implements ij.plugin.PlugIn)
  • sc.fiji.i5d.plugin.Z_Project (implements ij.plugin.PlugIn)
  • sc.fiji.snt.annotation.ZBAtlasUtils
  • loci.plugins.config.ZeissCZIWidgets (implements loci.plugins.config.IFormatWidgets, java.awt.event.ItemListener)
  • org.janelia.thickness.plugin.ZPositionCorrection (implements ij.plugin.PlugIn)

Interface Hierarchy

• ini.trakem2.display.AbstractOffscreenThread.RepaintProperties
• bdv.tools.boundingbox.AbstractTransformedBoxModel.IntervalChangedListener
• bdv.viewer.render.AccumulateProjectorFactory<A>
• net.imglib2.algorithm.Algorithm
  • fiji.plugin.trackmate.tracking.sparselap.costmatrix.CostMatrixCreator<K,J> (also extends net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.OutputAlgorithm<F>)
  • net.imglib2.algorithm.OutputAlgorithm<F>
    • fiji.plugin.trackmate.tracking.sparselap.costmatrix.CostMatrixCreator<K,J> (also extends net.imglib2.algorithm.Benchmark)
    • fiji.plugin.trackmate.detection.SpotDetector<T> (also extends net.imglib2.algorithm.Benchmark)
    • fiji.plugin.trackmate.detection.SpotGlobalDetector<T> (also extends net.imglib2.algorithm.Benchmark)
    • fiji.plugin.trackmate.tracking.SpotTracker (also extends net.imglib2.algorithm.MultiThreaded)
  • fiji.plugin.trackmate.detection.SpotDetector<T> (also extends net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.OutputAlgorithm<F>)
  • fiji.plugin.trackmate.detection.SpotGlobalDetector<T> (also extends net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.OutputAlgorithm<F>)
  • fiji.plugin.trackmate.tracking.SpotTracker (also extends net.imglib2.algorithm.MultiThreaded, net.imglib2.algorithm.OutputAlgorithm<F>)
• mpicbg.imglib.algorithm.Algorithm
  • mpicbg.imglib.algorithm.OutputAlgorithm<T>
  • mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder<T> (also extends mpicbg.imglib.algorithm.Benchmark)
• amira.AmiraParameters.IsA
• mpicbg.imglib.algorithm.pde.AnisotropicDiffusion.DiffusionFunction
• edu.utexas.clm.archipelago.ui.ArchipelagoUI
• ini.trakem2.display.AreaContainer
• util.ArrowDisplayer
• ij3d.AxisConstants
• mpicbg.spim.data.generic.sequence.BasicImgLoader
  • mpicbg.spim.data.generic.sequence.BasicMultiResolutionImgLoader
    • mpicbg.spim.data.sequence.MultiResolutionImgLoader (also extends mpicbg.spim.data.sequence.ImgLoader)
    • bdv.ViewerImgLoader
  • mpicbg.spim.data.generic.sequence.BoundedTypeBasicImgLoader<T>
    • mpicbg.spim.data.generic.sequence.TypedBasicImgLoader<T>
  • mpicbg.spim.data.sequence.ImgLoader
    • mpicbg.spim.data.sequence.MultiResolutionImgLoader (also extends mpicbg.spim.data.generic.sequence.BasicMultiResolutionImgLoader)
  • mpicbg.spim.data.sequence.MultiResolutionImgLoader (also extends mpicbg.spim.data.generic.sequence.BasicMultiResolutionImgLoader, mpicbg.spim.data.sequence.ImgLoader)
  • mpicbg.spim.data.generic.sequence.TypedBasicImgLoader<T>
  • bdv.ViewerImgLoader
• mpicbg.spim.data.generic.sequence.BasicSetupImgLoader<T>
  • mpicbg.spim.data.generic.sequence.BasicMultiResolutionSetupImgLoader<T>
    • mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader<T> (also extends mpicbg.spim.data.sequence.SetupImgLoader<T>)
    • bdv.ViewerSetupImgLoader<T,V>
  • mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader<T> (also extends mpicbg.spim.data.generic.sequence.BasicMultiResolutionSetupImgLoader<T>, mpicbg.spim.data.sequence.SetupImgLoader<T>)
  • mpicbg.spim.data.sequence.SetupImgLoader<T>
    • mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader<T> (also extends mpicbg.spim.data.generic.sequence.BasicMultiResolutionSetupImgLoader<T>)
  • bdv.ViewerSetupImgLoader<T,V>
• bdv.util.Bdv
• ij3d.behaviors.BehaviorCallback
• net.imglib2.algorithm.Benchmark
  • fiji.plugin.trackmate.tracking.sparselap.costmatrix.CostMatrixCreator<K,J> (also extends net.imglib2.algorithm.OutputAlgorithm<F>)
  • fiji.plugin.trackmate.features.edges.EdgeAnalyzer (also extends fiji.plugin.trackmate.features.FeatureAnalyzer, net.imglib2.algorithm.MultiThreaded)
  • fiji.plugin.trackmate.detection.SpotDetector<T> (also extends net.imglib2.algorithm.OutputAlgorithm<F>)
  • fiji.plugin.trackmate.detection.SpotGlobalDetector<T> (also extends net.imglib2.algorithm.OutputAlgorithm<F>)
  • fiji.plugin.trackmate.features.track.TrackAnalyzer (also extends fiji.plugin.trackmate.features.FeatureAnalyzer, net.imglib2.algorithm.MultiThreaded)
• mpicbg.imglib.algorithm.Benchmark
  • mpicbg.imglib.algorithm.extremafinder.RegionalExtremaFinder<T> (also extends mpicbg.imglib.algorithm.Algorithm)
• imglib.ops.operator.BinaryOperator
• spim.process.cuda.BlockGenerator<T>
• fiji.plugin.trackmate.gui.displaysettings.BoundedValue.UpdateListener
• bdv.util.BoundedValue.UpdateListener
• fiji.plugin.trackmate.gui.displaysettings.BoundedValueDouble.UpdateListener
• bdv.util.BoundedValueDouble.UpdateListener
• bdv.tools.boundingbox.BoxSelectionPanel.Box
• sc.fiji.snt.annotation.BrainAnnotation
• ini.trakem2.display.Bucketable
• adt.Byte3DArray
• bdv.img.cache.CacheArrayLoader<A>
• bdv.cache.CacheControl
• java.util.concurrent.Callable<V>
  • edu.utexas.clm.archipelago.compute.SerializableCallable<T> (also extends java.io.Serializable)
• sc.fiji.coloc.algorithms.ChannelMapper
• edu.utexas.clm.archipelago.listen.ClusterStateListener
• sc.fiji.snt.gui.ColorChangedListener
• java.lang.Comparable<T>
  • mpicbg.imglib.type.BasePairType<T> (also extends mpicbg.imglib.type.Type<T>)
  • mpicbg.imglib.type.BooleanType<T> (also extends mpicbg.imglib.type.Type<T>)
  • mpicbg.imglib.type.numeric.ExponentialMathType<T>
  • net.imagej.ImageJService
    • net.imagej.ui.swing.ops.OpFinderService
  • mpicbg.imglib.type.numeric.IntegerType<T>
  • net.imagej.ui.swing.ops.OpFinderService
  • org.scijava.Prioritized
    • net.imagej.ImageJService
      • net.imagej.ui.swing.ops.OpFinderService
    • net.imagej.ui.swing.ops.OpFinderService
    • org.scijava.plugin.RichPlugin (also extends org.scijava.Contextual, org.scijava.plugin.HasPluginInfo, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.plugin.SciJavaPlugin, org.scijava.Versioned)
      • net.imagej.ImageJService
        • net.imagej.ui.swing.ops.OpFinderService
      • net.imagej.ui.swing.ops.OpFinderService
      • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable)
        • net.imagej.ImageJService
          • net.imagej.ui.swing.ops.OpFinderService
        • net.imagej.ui.swing.ops.OpFinderService
    • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable, org.scijava.plugin.RichPlugin)
      • net.imagej.ImageJService
        • net.imagej.ui.swing.ops.OpFinderService
      • net.imagej.ui.swing.ops.OpFinderService
  • mpicbg.imglib.type.numeric.RealType<T> (also extends mpicbg.imglib.type.numeric.ComplexType<T>)
    • mpicbg.imglib.type.numeric.ExponentialMathType<T>
    • mpicbg.imglib.type.numeric.IntegerType<T>
  • org.scijava.plugin.RichPlugin (also extends org.scijava.Contextual, org.scijava.plugin.HasPluginInfo, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.Prioritized, org.scijava.plugin.SciJavaPlugin, org.scijava.Versioned)
    • net.imagej.ImageJService
      • net.imagej.ui.swing.ops.OpFinderService
    • net.imagej.ui.swing.ops.OpFinderService
    • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable)
      • net.imagej.ImageJService
        • net.imagej.ui.swing.ops.OpFinderService
      • net.imagej.ui.swing.ops.OpFinderService
  • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable, org.scijava.plugin.RichPlugin)
    • net.imagej.ImageJService
      • net.imagej.ui.swing.ops.OpFinderService
    • net.imagej.ui.swing.ops.OpFinderService
• imglib.ops.condition.Condition<T>
• mmorpho.Constants
• mpicbg.imglib.container.Container<T>
  • mpicbg.imglib.container.Container3D<T>
  • mpicbg.imglib.container.DirectAccessContainer<T,A>
  • mpicbg.imglib.container.PixelGridContainer<T>
    • mpicbg.imglib.container.DirectAccessContainer<T,A>
• ij3d.ContentConstants
• org.scijava.Contextual
  • net.imagej.ImageJService
    • net.imagej.ui.swing.ops.OpFinderService
  • net.imagej.ui.swing.ops.OpFinderService
  • org.scijava.plugin.RichPlugin (also extends org.scijava.plugin.HasPluginInfo, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.Prioritized, org.scijava.plugin.SciJavaPlugin, org.scijava.Versioned)
    • net.imagej.ImageJService
      • net.imagej.ui.swing.ops.OpFinderService
    • net.imagej.ui.swing.ops.OpFinderService
    • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable)
      • net.imagej.ImageJService
        • net.imagej.ui.swing.ops.OpFinderService
      • net.imagej.ui.swing.ops.OpFinderService
  • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable, org.scijava.plugin.RichPlugin)
    • net.imagej.ImageJService
      • net.imagej.ui.swing.ops.OpFinderService
    • net.imagej.ui.swing.ops.OpFinderService
• edu.utexas.clm.reconstructreader.reconstruct.ContourSet
• mpicbg.imglib.function.Converter<A,B>
• net.imglib2.converter.Converter<A,B>
  • net.imglib2.display.RealARGBColorConverter<R> (also extends net.imglib2.display.ColorConverter)
• bdv.tools.brightness.ConverterSetup
• bdv.tools.brightness.ConverterSetup.SetupChangeListener
• stitching.model.CoordinateTransform
  • stitching.model.InvertibleCoordinateTransform
• bdv.export.CopyBlock<T>
• mpicbg.spim.registration.detection.descriptor.CorrespondenceExtraction<T>
• sc.fiji.snt.tracing.cost.Cost
• fiji.plugin.trackmate.tracking.sparselap.costfunction.CostFunction<K,J>
• vib.segment.CustomCanvas.CanvasListener
• mpicbg.imglib.container.basictypecontainer.DataAccess
  • mpicbg.imglib.container.basictypecontainer.array.ArrayDataAccess<A>
  • mpicbg.imglib.container.basictypecontainer.BitAccess
  • mpicbg.imglib.container.basictypecontainer.ByteAccess
  • mpicbg.imglib.container.basictypecontainer.CharAccess
  • mpicbg.imglib.container.basictypecontainer.DoubleAccess
  • mpicbg.imglib.container.basictypecontainer.FakeAccess
  • mpicbg.imglib.container.basictypecontainer.FloatAccess
  • mpicbg.imglib.container.basictypecontainer.IntAccess
  • mpicbg.imglib.container.basictypecontainer.LongAccess
  • mpicbg.imglib.container.basictypecontainer.ShortAccess
• mpicbg.spim.postprocessing.deconvolution2.Deconvolver
• mpicbg.imglib.cursor.vector.Dimensionality
  • mpicbg.imglib.cursor.Cursor<T> (also extends java.lang.Iterable<T>, mpicbg.imglib.cursor.Iterable, java.util.Iterator<E>)
    • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableByDim, mpicbg.imglib.cursor.LocalizableCursor<T>)
      • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
    • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
    • mpicbg.imglib.cursor.LocalizableCursor<T> (also extends mpicbg.imglib.cursor.Localizable)
      • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableByDim)
        • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
      • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
      • mpicbg.imglib.cursor.LocalizableCursor3D<T> (also extends mpicbg.imglib.cursor.Localizable3D)
    • mpicbg.imglib.cursor.LocalizableCursor3D<T> (also extends mpicbg.imglib.cursor.Localizable3D, mpicbg.imglib.cursor.LocalizableCursor<T>)
    • mpicbg.imglib.cursor.LocalizablePlaneCursor<T> (also extends mpicbg.imglib.cursor.LocalizablePlane)
  • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableByDim, mpicbg.imglib.cursor.LocalizableCursor<T>)
    • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
  • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
  • mpicbg.imglib.cursor.LocalizableCursor<T> (also extends mpicbg.imglib.cursor.Cursor<T>, mpicbg.imglib.cursor.Localizable)
    • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableByDim)
      • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
    • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
    • mpicbg.imglib.cursor.LocalizableCursor3D<T> (also extends mpicbg.imglib.cursor.Localizable3D)
  • mpicbg.imglib.cursor.LocalizableCursor3D<T> (also extends mpicbg.imglib.cursor.Localizable3D, mpicbg.imglib.cursor.LocalizableCursor<T>)
  • mpicbg.imglib.cursor.LocalizablePlaneCursor<T> (also extends mpicbg.imglib.cursor.Cursor<T>, mpicbg.imglib.cursor.LocalizablePlane)
• fiji.plugin.trackmate.gui.displaysettings.DisplaySettings.UpdateListener
• org.scijava.Disposable
  • net.imagej.ImageJService
    • net.imagej.ui.swing.ops.OpFinderService
  • net.imagej.ui.swing.ops.OpFinderService
  • org.scijava.service.Service (also extends org.scijava.Initializable, org.scijava.plugin.RichPlugin)
    • net.imagej.ImageJService
      • net.imagej.ui.swing.ops.OpFinderService
    • net.imagej.ui.swing.ops.OpFinderService
• ini.trakem2.display.DoStep
• bdv.export.DownsampleBlock<T>
• edu.utexas.clm.archipelago.util.EasyLogger
• bdv.img.cache.EmptyArrayCreator<A>
• net.imglib2.EuclideanSpace
  • mpicbg.spim.data.sequence.VoxelDimensions
• java.util.EventListener
  • DisplayChangeListener
  • fsalign.FileListener
  • fiji.plugin.trackmate.ModelChangeListener
  • fiji.plugin.trackmate.SelectionChangeListener
• bdv.export.ExportScalePyramid.AfterEachPlane
• bdv.export.ExportScalePyramid.DatasetIO<D,T>
• bdv.export.ExportScalePyramid.LoopbackHeuristic
• mpicbg.trakem2.transform.ExportUnsignedByte.ImageSource
• mpicbg.imglib.Factory
  • mpicbg.spim.fusion.CombinedPixelWeightenerFactory<I>
  • mpicbg.spim.fusion.IsolatedPixelWeightenerFactory<I>
• fiji.plugin.trackmate.gui.components.FeaturePlotSelectionPanel.PlotAction
• org.janelia.it.jacs.shared.ffmpeg.FFMPGByteAcceptor
• sc.fiji.snt.gui.FileDrop.Listener
• edu.utexas.clm.archipelago.network.translation.FileTranslator
• levelsets.filter.Filter
• landmarks.FineTuneProgressListener
• mpicbg.imglib.algorithm.peak.FitFunction
• java.util.function.Function<T,R>
  • fiji.plugin.trackmate.visualization.FeatureColorGenerator<K>
    • fiji.plugin.trackmate.visualization.TrackColorGenerator
  • fiji.plugin.trackmate.visualization.TrackColorGenerator
• mpicbg.imglib.function.Function<A,B,C>
• fiji.plugin.trackmate.graph.Function1<T1,T2>
• fiji.plugin.trackmate.graph.Function2<T1,T2>
• bdv.ij.export.imgloader.FusionImageLoader.SliceLoader<T>
• features.GaussianGenerationCallback
• spim.fiji.plugin.util.GenericDialogAppender
• mpicbg.spim.registration.bead.error.GlobalErrorStatistics
• ini.trakem2.display.graphics.GraphicsSource
• org.janelia.it.jacs.shared.ffmpeg.H5JLoader.DataAcceptor
• org.scijava.plugin.HasPluginInfo
  • net.imagej.ImageJService
    • net.imagej.ui.swing.ops.OpFinderService
  • net.imagej.ui.swing.ops.OpFinderService
  • org.scijava.plugin.RichPlugin (also extends org.scijava.Contextual, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.Prioritized, org.scijava.plugin.SciJavaPlugin, org.scijava.Versioned)
    • net.imagej.ImageJService
      • net.imagej.ui.swing.ops.OpFinderService
    • net.imagej.ui.swing.ops.OpFinderService
    • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable)
      • net.imagej.ImageJService
        • net.imagej.ui.swing.ops.OpFinderService
      • net.imagej.ui.swing.ops.OpFinderService
  • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable, org.scijava.plugin.RichPlugin)
    • net.imagej.ImageJService
      • net.imagej.ui.swing.ops.OpFinderService
    • net.imagej.ui.swing.ops.OpFinderService
• sc.fiji.snt.HessianGenerationCallback
• sc.fiji.snt.tracing.heuristic.Heuristic
• mpicbg.imglib.algorithm.histogram.HistogramBinFactory<T>
• ini.trakem2.utils.History.Step<T>
• org.scijava.Identifiable
  • net.imagej.ImageJService
    • net.imagej.ui.swing.ops.OpFinderService
  • net.imagej.ui.swing.ops.OpFinderService
  • org.scijava.plugin.RichPlugin (also extends org.scijava.Contextual, org.scijava.plugin.HasPluginInfo, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.Prioritized, org.scijava.plugin.SciJavaPlugin, org.scijava.Versioned)
    • net.imagej.ImageJService
      • net.imagej.ui.swing.ops.OpFinderService
    • net.imagej.ui.swing.ops.OpFinderService
    • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable)
      • net.imagej.ImageJService
        • net.imagej.ui.swing.ops.OpFinderService
      • net.imagej.ui.swing.ops.OpFinderService
  • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable, org.scijava.plugin.RichPlugin)
    • net.imagej.ImageJService
      • net.imagej.ui.swing.ops.OpFinderService
    • net.imagej.ui.swing.ops.OpFinderService
• ini.trakem2.imaging.filters.IFilter
• loci.plugins.config.IFormatWidgets
• script.imglib.math.fn.IFunction
• bdv.img.imaris.IHDF5Access
• script.imglib.math.fn.ImageComputation<T>
• bdv.ij.export.imgloader.ImagePlusImgLoader.ConverterFactory<T>
• ini.trakem2.imaging.ImagePreprocessor
• mpicbg.imglib.container.ImageProperties
• spim.process.fusion.export.ImgExport
  • spim.process.fusion.export.ImgExportTitle
• mpicbg.spim.data.generic.sequence.ImgLoaderHint
• spim.process.fusion.export.ImgTitler
• inference.InferenceCaller
• org.janelia.thickness.inference.InferFromMatrix.Regularizer
• org.scijava.Initializable
  • net.imagej.ImageJService
    • net.imagej.ui.swing.ops.OpFinderService
  • net.imagej.ui.swing.ops.OpFinderService
  • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.plugin.RichPlugin)
    • net.imagej.ImageJService
      • net.imagej.ui.swing.ops.OpFinderService
    • net.imagej.ui.swing.ops.OpFinderService
• sc.fiji.coloc.algorithms.IntComparator
• mpicbg.ij.integral.IntegralImage
• spim.fiji.spimdata.explorer.interestpoint.InterestPointOverlay.InterestPointSource
• vib.InterpolatedImage.Interpolate
• bdv.viewer.InterpolationModeListener
• mpicbg.imglib.interpolation.Interpolator<T>
  • mpicbg.imglib.interpolation.Interpolator1D<T>
  • mpicbg.imglib.interpolation.Interpolator2D<T>
  • mpicbg.imglib.interpolation.Interpolator3D<T>
• mpicbg.ij.InverseMapping<T>
  • mpicbg.ij.InvertibleMapping<T> (also extends mpicbg.ij.Mapping<T>)
• java.lang.Iterable<T>
  • mpicbg.imglib.cursor.Cursor<T> (also extends mpicbg.imglib.cursor.vector.Dimensionality, mpicbg.imglib.cursor.Iterable, java.util.Iterator<E>)
    • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableByDim, mpicbg.imglib.cursor.LocalizableCursor<T>)
      • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
    • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
    • mpicbg.imglib.cursor.LocalizableCursor<T> (also extends mpicbg.imglib.cursor.Localizable)
      • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableByDim)
        • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
      • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
      • mpicbg.imglib.cursor.LocalizableCursor3D<T> (also extends mpicbg.imglib.cursor.Localizable3D)
    • mpicbg.imglib.cursor.LocalizableCursor3D<T> (also extends mpicbg.imglib.cursor.Localizable3D, mpicbg.imglib.cursor.LocalizableCursor<T>)
    • mpicbg.imglib.cursor.LocalizablePlaneCursor<T> (also extends mpicbg.imglib.cursor.LocalizablePlane)
  • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableByDim, mpicbg.imglib.cursor.LocalizableCursor<T>)
    • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
  • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
  • mpicbg.imglib.cursor.LocalizableCursor<T> (also extends mpicbg.imglib.cursor.Cursor<T>, mpicbg.imglib.cursor.Localizable)
    • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableByDim)
      • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
    • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
    • mpicbg.imglib.cursor.LocalizableCursor3D<T> (also extends mpicbg.imglib.cursor.Localizable3D)
  • mpicbg.imglib.cursor.LocalizableCursor3D<T> (also extends mpicbg.imglib.cursor.Localizable3D, mpicbg.imglib.cursor.LocalizableCursor<T>)
  • mpicbg.imglib.cursor.LocalizablePlaneCursor<T> (also extends mpicbg.imglib.cursor.Cursor<T>, mpicbg.imglib.cursor.LocalizablePlane)
  • sc.fiji.snt.tracing.image.SearchImage<V>
• mpicbg.imglib.cursor.Iterable
  • mpicbg.imglib.cursor.Cursor<T> (also extends mpicbg.imglib.cursor.vector.Dimensionality, java.lang.Iterable<T>, java.util.Iterator<E>)
    • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableByDim, mpicbg.imglib.cursor.LocalizableCursor<T>)
      • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
    • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
    • mpicbg.imglib.cursor.LocalizableCursor<T> (also extends mpicbg.imglib.cursor.Localizable)
      • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableByDim)
        • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
      • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
      • mpicbg.imglib.cursor.LocalizableCursor3D<T> (also extends mpicbg.imglib.cursor.Localizable3D)
    • mpicbg.imglib.cursor.LocalizableCursor3D<T> (also extends mpicbg.imglib.cursor.Localizable3D, mpicbg.imglib.cursor.LocalizableCursor<T>)
    • mpicbg.imglib.cursor.LocalizablePlaneCursor<T> (also extends mpicbg.imglib.cursor.LocalizablePlane)
  • mpicbg.imglib.cursor.link.CursorLink
  • mpicbg.imglib.cursor.Localizable
    • mpicbg.imglib.cursor.link.CursorLink
    • mpicbg.imglib.cursor.LocalizableByDim
      • mpicbg.imglib.cursor.link.CursorLink
      • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableCursor<T>)
        • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
      • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
    • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableByDim, mpicbg.imglib.cursor.LocalizableCursor<T>)
      • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
    • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
    • mpicbg.imglib.cursor.LocalizableCursor<T> (also extends mpicbg.imglib.cursor.Cursor<T>)
      • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableByDim)
        • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
      • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
      • mpicbg.imglib.cursor.LocalizableCursor3D<T> (also extends mpicbg.imglib.cursor.Localizable3D)
    • mpicbg.imglib.cursor.LocalizableCursor3D<T> (also extends mpicbg.imglib.cursor.Localizable3D, mpicbg.imglib.cursor.LocalizableCursor<T>)
    • mpicbg.imglib.cursor.LocalizablePlane
      • mpicbg.imglib.cursor.LocalizablePlaneCursor<T> (also extends mpicbg.imglib.cursor.Cursor<T>)
    • mpicbg.imglib.cursor.LocalizablePlaneCursor<T> (also extends mpicbg.imglib.cursor.Cursor<T>, mpicbg.imglib.cursor.LocalizablePlane)
  • mpicbg.imglib.cursor.LocalizableByDim
    • mpicbg.imglib.cursor.link.CursorLink
    • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableCursor<T>)
      • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
    • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
  • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableByDim, mpicbg.imglib.cursor.LocalizableCursor<T>)
    • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
  • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
  • mpicbg.imglib.cursor.LocalizableCursor<T> (also extends mpicbg.imglib.cursor.Cursor<T>, mpicbg.imglib.cursor.Localizable)
    • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableByDim)
      • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
    • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
    • mpicbg.imglib.cursor.LocalizableCursor3D<T> (also extends mpicbg.imglib.cursor.Localizable3D)
  • mpicbg.imglib.cursor.LocalizableCursor3D<T> (also extends mpicbg.imglib.cursor.Localizable3D, mpicbg.imglib.cursor.LocalizableCursor<T>)
  • mpicbg.imglib.cursor.LocalizablePlane
    • mpicbg.imglib.cursor.LocalizablePlaneCursor<T> (also extends mpicbg.imglib.cursor.Cursor<T>)
  • mpicbg.imglib.cursor.LocalizablePlaneCursor<T> (also extends mpicbg.imglib.cursor.Cursor<T>, mpicbg.imglib.cursor.LocalizablePlane)
• imglib.ops.observer.IterationStatus
• java.util.Iterator<E>
  • mpicbg.imglib.cursor.Cursor<T> (also extends mpicbg.imglib.cursor.vector.Dimensionality, java.lang.Iterable<T>, mpicbg.imglib.cursor.Iterable)
    • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableByDim, mpicbg.imglib.cursor.LocalizableCursor<T>)
      • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
    • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
    • mpicbg.imglib.cursor.LocalizableCursor<T> (also extends mpicbg.imglib.cursor.Localizable)
      • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableByDim)
        • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
      • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
      • mpicbg.imglib.cursor.LocalizableCursor3D<T> (also extends mpicbg.imglib.cursor.Localizable3D)
    • mpicbg.imglib.cursor.LocalizableCursor3D<T> (also extends mpicbg.imglib.cursor.Localizable3D, mpicbg.imglib.cursor.LocalizableCursor<T>)
    • mpicbg.imglib.cursor.LocalizablePlaneCursor<T> (also extends mpicbg.imglib.cursor.LocalizablePlane)
  • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableByDim, mpicbg.imglib.cursor.LocalizableCursor<T>)
    • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
  • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
  • mpicbg.imglib.cursor.LocalizableCursor<T> (also extends mpicbg.imglib.cursor.Cursor<T>, mpicbg.imglib.cursor.Localizable)
    • mpicbg.imglib.cursor.LocalizableByDimCursor<T> (also extends mpicbg.imglib.cursor.LocalizableByDim)
      • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D)
    • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
    • mpicbg.imglib.cursor.LocalizableCursor3D<T> (also extends mpicbg.imglib.cursor.Localizable3D)
  • mpicbg.imglib.cursor.LocalizableCursor3D<T> (also extends mpicbg.imglib.cursor.Localizable3D, mpicbg.imglib.cursor.LocalizableCursor<T>)
  • mpicbg.imglib.cursor.LocalizablePlaneCursor<T> (also extends mpicbg.imglib.cursor.Cursor<T>, mpicbg.imglib.cursor.LocalizablePlane)
• mpicbg.imglib.labeling.LabelingCursorStrategy<T,L>
• mpicbg.imglib.labeling.LabelingCursorStrategyFactory<T,L>
• mpicbg.spim.data.legacy.LegacyBasicImgLoader<T>
  • mpicbg.spim.data.legacy.LegacyImgLoader<T>
  • bdv.spimdata.legacy.LegacyViewerImgLoader<T,V>
• com.sun.jna.Library
  • CPU_Meter.CLibrary
  • spim.process.cuda.CUDAFourierConvolution
  • spim.process.cuda.CUDASeparableConvolution
  • spim.process.cuda.CUDAStandardFunctions
    • spim.process.cuda.CUDAFourierConvolution
    • spim.process.cuda.CUDASeparableConvolution
• ini.trakem2.display.Line3D
• net.imglib2.display.LinearRange
  • net.imglib2.display.ColorConverter
    • net.imglib2.display.RealARGBColorConverter<R> (also extends net.imglib2.converter.Converter<A,B>)
  • net.imglib2.display.RealARGBColorConverter<R> (also extends net.imglib2.display.ColorConverter, net.imglib2.converter.Converter<A,B>)
• bigwarp.loader.Loader
• mpicbg.imglib.cursor.Localizable3D
  • mpicbg.imglib.cursor.LocalizableByDim3D
    • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
  • mpicbg.imglib.cursor.LocalizableByDimCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableByDim3D, mpicbg.imglib.cursor.LocalizableByDimCursor<T>)
  • mpicbg.imglib.cursor.LocalizableCursor3D<T> (also extends mpicbg.imglib.cursor.LocalizableCursor<T>)
• org.scijava.Locatable
  • net.imagej.ImageJService
    • net.imagej.ui.swing.ops.OpFinderService
  • net.imagej.ui.swing.ops.OpFinderService
  • org.scijava.plugin.RichPlugin (also extends org.scijava.Contextual, org.scijava.plugin.HasPluginInfo, org.scijava.Identifiable, org.scijava.log.Logged, org.scijava.Prioritized, org.scijava.plugin.SciJavaPlugin, org.scijava.Versioned)
    • net.imagej.ImageJService
      • net.imagej.ui.swing.ops.OpFinderService
    • net.imagej.ui.swing.ops.OpFinderService
    • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable)
      • net.imagej.ImageJService
        • net.imagej.ui.swing.ops.OpFinderService
      • net.imagej.ui.swing.ops.OpFinderService
  • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable, org.scijava.plugin.RichPlugin)
    • net.imagej.ImageJService
      • net.imagej.ui.swing.ops.OpFinderService
    • net.imagej.ui.swing.ops.OpFinderService
• org.scijava.log.Logged
  • net.imagej.ImageJService
    • net.imagej.ui.swing.ops.OpFinderService
  • net.imagej.ui.swing.ops.OpFinderService
  • org.scijava.plugin.RichPlugin (also extends org.scijava.Contextual, org.scijava.plugin.HasPluginInfo, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.Prioritized, org.scijava.plugin.SciJavaPlugin, org.scijava.Versioned)
    • net.imagej.ImageJService
      • net.imagej.ui.swing.ops.OpFinderService
    • net.imagej.ui.swing.ops.OpFinderService
    • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable)
      • net.imagej.ImageJService
        • net.imagej.ui.swing.ops.OpFinderService
      • net.imagej.ui.swing.ops.OpFinderService
  • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable, org.scijava.plugin.RichPlugin)
    • net.imagej.ImageJService
      • net.imagej.ui.swing.ops.OpFinderService
    • net.imagej.ui.swing.ops.OpFinderService
• ij3d.gui.LUTDialog.Listener
• video2.Make_Transition.Transition
• bdv.tools.transformation.ManualTransformActiveListener
• mpicbg.ij.Mapping<T>
  • mpicbg.ij.InvertibleMapping<T> (also extends mpicbg.ij.InverseMapping<T>)
• mpicbg.ij.stack.Mapping<T>
• mpicbg.pointdescriptor.matcher.Matcher
• edu.utexas.clm.archipelago.listen.MessageListener
• bdv.tools.brightness.MinMaxGroup.UpdateListener
• bdv.viewer.render.MipmapOrdering
• ini.trakem2.display.Mode
• vib.app.module.ModuleListener
• bdv.viewer.overlay.MultiBoxOverlay.IntervalAndTransform
• fiji.features.MultiTaskProgress
• net.imglib2.algorithm.MultiThreaded
  • fiji.plugin.trackmate.features.edges.EdgeAnalyzer (also extends net.imglib2.algorithm.Benchmark, fiji.plugin.trackmate.features.FeatureAnalyzer)
  • fiji.plugin.trackmate.tracking.SpotTracker (also extends net.imglib2.algorithm.OutputAlgorithm<F>)
  • fiji.plugin.trackmate.features.track.TrackAnalyzer (also extends net.imglib2.algorithm.Benchmark, fiji.plugin.trackmate.features.FeatureAnalyzer)
• mpicbg.imglib.algorithm.MultiThreaded
• pal.math.MultivariateFunction
  • pal.math.MFWithGradient
• spim.fiji.datasetmanager.MultiViewDatasetDefinition
• fiji.util.node.Node<N>
  • fiji.util.node.Leaf<N>
• mpicbg.imglib.algorithm.kdtree.node.Node<N>
  • mpicbg.imglib.algorithm.kdtree.node.Leaf<N>
• ini.trakem2.display.Node.Operation<I>
• edu.utexas.clm.archipelago.network.shell.NodeShell
• edu.utexas.clm.archipelago.listen.NodeShellListener
• edu.utexas.clm.archipelago.listen.NodeStateListener
• fiji.plugin.trackmate.util.OnRequestUpdater.Refreshable
• ini.trakem2.utils.Operation<I,O>
• fiji.plugin.trackmate.graph.OutputFunction<E>
• bdv.viewer.animate.OverlayAnimator
• fiji.util.gui.OverlayedImageCanvas.Overlay
• bdv.viewer.OverlayRenderer
• ini.trakem2.display.Paintable
  • ini.trakem2.display.ImageData
• fiji.plugin.trackmate.util.PainterThread.Paintable
• bdv.viewer.render.PainterThread.Paintable
• net.imglib2.PairIterator<T>
• stacks.PaneOwner
• sc.fiji.snt.hyperpanes.PaneOwner
• sc.fiji.snt.PathTransformer
• mpicbg.stitching.fusion.PixelFusion
• distance.PixelPairs
• bdv.util.PlaceHolderOverlayInfo.VisibilityChangeListener
• mpicbg.imglib.container.basictypecontainer.PlanarAccess<A>
• vib.PointList.PointListListener
• org.janelia.intensity.PointMatchFilter
• mpicbg.icp.PointMatchIdentification<P>
• org.nfunk.jep.function.PostfixMathCommandI
  • fiji.expressionparser.function.ImgLibFunction<T>
• mpicbg.spim.fusion.PreDeconvolutionFusionInterface
• net.imglib2.predicate.Predicate<T>
• edu.utexas.clm.archipelago.listen.ProcessListener
• sc.fiji.snt.analysis.sholl.ProfileProperties
  • sc.fiji.snt.analysis.sholl.parsers.Parser
• bdv.export.ProgressWriter
• spimopener.Projector
• edu.utexas.clm.archipelago.listen.QueueListener
• stitching.Quicksortable
• mpi.fruitfly.math.Quicksortable
• bdv.tools.boundingbox.RealBoxSelectionPanel.RealBox
• imglib.ops.function.RealFunction<T>
• edu.utexas.clm.reconstructreader.reconstruct.ReconstructTranslator.TranslationMessenger
• sc.fiji.snt.io.RemoteSWCLoader
• bdv.viewer.render.RenderResult
• bdv.viewer.render.RenderTarget<R>
• org.janelia.utility.ui.RepeatingReleasedEventsFixer.Reposted
• bdv.viewer.RequestRepaint
• sc.fiji.coloc.results.ResultHandler<T>
• mpicbg.trakem2.util.RobustNormalizeLocalContrast.PixelSetter
• events.RoiListener
• fiji.statistics.RoiStatistics.Accessor
• fiji.statistics.RoiStatistics.Accumulator
• fiji.statistics.RoiStatistics.PixelHandler
• org.scijava.plugin.SciJavaPlugin
  • fiji.plugin.trackmate.features.edges.EdgeAnalyzer (also extends net.imglib2.algorithm.Benchmark, fiji.plugin.trackmate.features.FeatureAnalyzer, net.imglib2.algorithm.MultiThreaded)
  • fiji.plugin.trackmate.features.FeatureAnalyzer
    • fiji.plugin.trackmate.features.edges.EdgeAnalyzer (also extends net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.MultiThreaded)
    • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>
    • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactoryBase<T>
      • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>
      • fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>
    • fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>
    • fiji.plugin.trackmate.features.track.TrackAnalyzer (also extends net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.MultiThreaded)
  • net.imagej.ImageJService
    • net.imagej.ui.swing.ops.OpFinderService
  • net.imagej.ui.swing.ops.OpFinderService
  • org.scijava.plugin.RichPlugin (also extends org.scijava.Contextual, org.scijava.plugin.HasPluginInfo, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.Prioritized, org.scijava.Versioned)
    • net.imagej.ImageJService
      • net.imagej.ui.swing.ops.OpFinderService
    • net.imagej.ui.swing.ops.OpFinderService
    • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable)
      • net.imagej.ImageJService
        • net.imagej.ui.swing.ops.OpFinderService
      • net.imagej.ui.swing.ops.OpFinderService
  • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable, org.scijava.plugin.RichPlugin)
    • net.imagej.ImageJService
      • net.imagej.ui.swing.ops.OpFinderService
    • net.imagej.ui.swing.ops.OpFinderService
  • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>
  • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactoryBase<T>
    • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>
    • fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>
  • fiji.plugin.trackmate.detection.SpotDetectorFactory<T>
  • fiji.plugin.trackmate.detection.SpotDetectorFactoryBase<T>
    • fiji.plugin.trackmate.detection.SpotDetectorFactory<T>
    • fiji.plugin.trackmate.detection.SpotGlobalDetectorFactory<T>
  • fiji.plugin.trackmate.detection.SpotGlobalDetectorFactory<T>
  • fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>
  • fiji.plugin.trackmate.tracking.SpotTrackerFactory
  • fiji.plugin.trackmate.features.track.TrackAnalyzer (also extends net.imglib2.algorithm.Benchmark, fiji.plugin.trackmate.features.FeatureAnalyzer, net.imglib2.algorithm.MultiThreaded)
  • fiji.plugin.trackmate.action.TrackMateActionFactory
  • fiji.plugin.trackmate.TrackMateModule
    • fiji.plugin.trackmate.features.edges.EdgeAnalyzer (also extends net.imglib2.algorithm.Benchmark, fiji.plugin.trackmate.features.FeatureAnalyzer, net.imglib2.algorithm.MultiThreaded)
    • fiji.plugin.trackmate.features.FeatureAnalyzer
      • fiji.plugin.trackmate.features.edges.EdgeAnalyzer (also extends net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.MultiThreaded)
      • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>
      • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactoryBase<T>
        • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>
        • fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>
      • fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>
      • fiji.plugin.trackmate.features.track.TrackAnalyzer (also extends net.imglib2.algorithm.Benchmark, net.imglib2.algorithm.MultiThreaded)
    • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>
    • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactoryBase<T>
      • fiji.plugin.trackmate.features.spot.SpotAnalyzerFactory<T>
      • fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>
    • fiji.plugin.trackmate.detection.SpotDetectorFactory<T>
    • fiji.plugin.trackmate.detection.SpotDetectorFactoryBase<T>
      • fiji.plugin.trackmate.detection.SpotDetectorFactory<T>
      • fiji.plugin.trackmate.detection.SpotGlobalDetectorFactory<T>
    • fiji.plugin.trackmate.detection.SpotGlobalDetectorFactory<T>
    • fiji.plugin.trackmate.features.spot.SpotMorphologyAnalyzerFactory<T>
    • fiji.plugin.trackmate.tracking.SpotTrackerFactory
    • fiji.plugin.trackmate.features.track.TrackAnalyzer (also extends net.imglib2.algorithm.Benchmark, fiji.plugin.trackmate.features.FeatureAnalyzer, net.imglib2.algorithm.MultiThreaded)
    • fiji.plugin.trackmate.action.TrackMateActionFactory
    • fiji.plugin.trackmate.visualization.ViewFactory
  • fiji.plugin.trackmate.visualization.ViewFactory
• sc.fiji.snt.tracing.artist.SearchArtist
• sc.fiji.snt.tracing.SearchInterface
• sc.fiji.snt.tracing.SearchNode
• sc.fiji.snt.SearchProgressCallback
  • sc.fiji.snt.FillerProgressCallback
• spim.fiji.spimdata.explorer.SelectedViewDescriptionListener<AS>
• java.io.Serializable
  • mpicbg.models.Affine1D<T>
  • mpicbg.models.Affine2D<T>
  • mpicbg.models.Affine3D<T>
  • edu.utexas.clm.archipelago.network.translation.Bottle<A>
  • edu.utexas.clm.archipelago.network.translation.Bottler<A>
  • mpicbg.models.Boundable
    • mpicbg.models.InvertibleBoundable (also extends mpicbg.models.InverseBoundable, mpicbg.models.InvertibleCoordinateTransform)
  • mpicbg.models.CoordinateTransform
    • mpicbg.models.Affine1D<T>
    • mpicbg.models.Affine2D<T>
    • mpicbg.models.Affine3D<T>
    • mpicbg.models.Boundable
      • mpicbg.models.InvertibleBoundable (also extends mpicbg.models.InverseBoundable, mpicbg.models.InvertibleCoordinateTransform)
    • mpicbg.trakem2.transform.CoordinateTransform
      • mpicbg.trakem2.transform.InvertibleCoordinateTransform (also extends mpicbg.models.InvertibleCoordinateTransform)
    • mpicbg.models.InvertibleBoundable (also extends mpicbg.models.Boundable, mpicbg.models.InverseBoundable, mpicbg.models.InvertibleCoordinateTransform)
    • mpicbg.models.InvertibleCoordinateTransform (also extends mpicbg.models.InverseCoordinateTransform)
      • mpicbg.models.Affine1D<T>
      • mpicbg.models.Affine2D<T>
      • mpicbg.models.Affine3D<T>
      • mpicbg.models.InvertibleBoundable (also extends mpicbg.models.Boundable, mpicbg.models.InverseBoundable)
      • mpicbg.trakem2.transform.InvertibleCoordinateTransform (also extends mpicbg.trakem2.transform.CoordinateTransform)
    • mpicbg.trakem2.transform.InvertibleCoordinateTransform (also extends mpicbg.trakem2.transform.CoordinateTransform, mpicbg.models.InvertibleCoordinateTransform)
    • mpicbg.models.Model<M>
  • mpicbg.trakem2.transform.CoordinateTransform
    • mpicbg.trakem2.transform.InvertibleCoordinateTransform (also extends mpicbg.models.InvertibleCoordinateTransform)
  • ini.trakem2.utils.Filter<T>
  • mpicbg.models.InverseBoundable
    • mpicbg.models.InvertibleBoundable (also extends mpicbg.models.Boundable, mpicbg.models.InvertibleCoordinateTransform)
  • mpicbg.models.InverseCoordinateTransform
    • mpicbg.models.Affine1D<T>
    • mpicbg.models.Affine2D<T>
    • mpicbg.models.Affine3D<T>
    • mpicbg.models.InverseBoundable
      • mpicbg.models.InvertibleBoundable (also extends mpicbg.models.Boundable, mpicbg.models.InvertibleCoordinateTransform)
    • mpicbg.models.InvertibleBoundable (also extends mpicbg.models.Boundable, mpicbg.models.InverseBoundable, mpicbg.models.InvertibleCoordinateTransform)
    • mpicbg.models.InvertibleCoordinateTransform (also extends mpicbg.models.CoordinateTransform)
      • mpicbg.models.Affine1D<T>
      • mpicbg.models.Affine2D<T>
      • mpicbg.models.Affine3D<T>
      • mpicbg.models.InvertibleBoundable (also extends mpicbg.models.Boundable, mpicbg.models.InverseBoundable)
      • mpicbg.trakem2.transform.InvertibleCoordinateTransform (also extends mpicbg.trakem2.transform.CoordinateTransform)
    • mpicbg.trakem2.transform.InvertibleCoordinateTransform (also extends mpicbg.trakem2.transform.CoordinateTransform, mpicbg.models.InvertibleCoordinateTransform)
  • mpicbg.models.InvertibleBoundable (also extends mpicbg.models.Boundable, mpicbg.models.InverseBoundable, mpicbg.models.InvertibleCoordinateTransform)
  • mpicbg.models.InvertibleCoordinateTransform (also extends mpicbg.models.CoordinateTransform, mpicbg.models.InverseCoordinateTransform)
    • mpicbg.models.Affine1D<T>
    • mpicbg.models.Affine2D<T>
    • mpicbg.models.Affine3D<T>
    • mpicbg.models.InvertibleBoundable (also extends mpicbg.models.Boundable, mpicbg.models.InverseBoundable)
    • mpicbg.trakem2.transform.InvertibleCoordinateTransform (also extends mpicbg.trakem2.transform.CoordinateTransform)
  • mpicbg.trakem2.transform.InvertibleCoordinateTransform (also extends mpicbg.trakem2.transform.CoordinateTransform, mpicbg.models.InvertibleCoordinateTransform)
  • mpicbg.models.Model<M>
  • mpicbg.models.PointFactory<P>
  • mpicbg.models.PointMatchFactory<M>
  • edu.utexas.clm.archipelago.compute.SerializableCallable<T> (also extends java.util.concurrent.Callable<V>)
  • mpicbg.models.TransformList<E>
• edu.utexas.clm.reconstructreader.trakem2.SeriesTemplate
• bdv.tools.brightness.SetupAssignments.UpdateListener
• sc.fiji.snt.analysis.sholl.math.ShollStats
• features.SigmaPalette.SigmaPaletteListener
• sc.fiji.snt.gui.SigmaPaletteListener
• mpicbg.pointdescriptor.similarity.SimilarityMeasure
• bdv.img.cache.SimpleCacheArrayLoader<A>
• events.SliceListener
• fiji.tool.SliceListener
• fiji.plugin.trackmate.gui.displaysettings.SliderPanelDouble.RangeListener
• bdv.tools.brightness.SliderPanelDouble.RangeListener
• sc.fiji.snt.event.SNTListener
• sc.fiji.snt.util.SNTPoint
• bdv.viewer.Source<T>
• bdv.viewer.SourceToConverterSetupBimap
• fiji.plugin.trackmate.features.spot.SpotAnalyzer<T>
• levelsets.algorithm.StagedAlgorithm
• ini.trakem2.persistence.StaleFiles.Path
• mpicbg.imglib.algorithm.roi.StatisticalOperation.StatisticsCollectionStrategy<R>
• mpicbg.imglib.multithreading.Stopable
• fiji.plugin.trackmate.graph.StringFormater<V>
• fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElement
• fiji.plugin.trackmate.gui.displaysettings.StyleElements.StyleElementVisitor
• ini.trakem2.display.Taggable
• ini.trakem2.tree.Thing
  • ini.trakem2.tree.TitledThing
• ij3d.TimelapseListener
• bdv.viewer.TimePointListener
• fiji.tool.ToolToggleListener
• fiji.tool.ToolWithOptions
• ini.trakem2.plugin.TPlugIn
• fiji.plugin.trackmate.action.TrackMateAction
• fiji.plugin.trackmate.visualization.TrackMateModelView
• edu.utexas.clm.archipelago.listen.TransceiverExceptionListener
• edu.utexas.clm.archipelago.listen.TransceiverListener
• vib.transforms.Transform
• bdv.tools.boundingbox.TransformedBox
• bdv.tools.boundingbox.TransformedBoxOverlay.HighlightedCornerListener
• bdv.TransformEventHandler
• bdv.TransformEventHandlerFactory
• bdv.viewer.TransformListener<A>
• bigwarp.transforms.TransformSolver<T>
• bdv.TransformState
• sc.fiji.snt.TreeProperties
• isosurface.Triangulator
• mpicbg.imglib.type.Type<T>
  • mpicbg.imglib.type.BasePairType<T> (also extends java.lang.Comparable<T>)
  • mpicbg.imglib.type.BooleanType<T> (also extends java.lang.Comparable<T>)
  • mpicbg.imglib.type.numeric.ComplexType<T>
    • mpicbg.imglib.type.numeric.ExponentialMathType<T>
    • mpicbg.imglib.type.numeric.IntegerType<T>
    • mpicbg.imglib.type.numeric.RealType<T> (also extends java.lang.Comparable<T>)
      • mpicbg.imglib.type.numeric.ExponentialMathType<T>
      • mpicbg.imglib.type.numeric.IntegerType<T>
  • mpicbg.imglib.type.numeric.ExponentialMathType<T>
  • mpicbg.imglib.type.numeric.IntegerType<T>
  • mpicbg.imglib.type.numeric.NumericType<T>
    • mpicbg.imglib.type.numeric.ComplexType<T>
      • mpicbg.imglib.type.numeric.ExponentialMathType<T>
      • mpicbg.imglib.type.numeric.IntegerType<T>
      • mpicbg.imglib.type.numeric.RealType<T> (also extends java.lang.Comparable<T>)
        • mpicbg.imglib.type.numeric.ExponentialMathType<T>
        • mpicbg.imglib.type.numeric.IntegerType<T>
    • mpicbg.imglib.type.numeric.ExponentialMathType<T>
    • mpicbg.imglib.type.numeric.IntegerType<T>
    • mpicbg.imglib.type.numeric.RealType<T> (also extends java.lang.Comparable<T>, mpicbg.imglib.type.numeric.ComplexType<T>)
      • mpicbg.imglib.type.numeric.ExponentialMathType<T>
      • mpicbg.imglib.type.numeric.IntegerType<T>
  • mpicbg.imglib.type.numeric.RealType<T> (also extends java.lang.Comparable<T>, mpicbg.imglib.type.numeric.ComplexType<T>)
    • mpicbg.imglib.type.numeric.ExponentialMathType<T>
    • mpicbg.imglib.type.numeric.IntegerType<T>
• ij3d.UIAdapter
• imglib.ops.operator.UnaryOperator
• pal.math.UnivariateFunction
• ij3d.UniverseListener
• ini.trakem2.display.VectorData
• ini.trakem2.vector.VectorString
• org.scijava.Versioned
  • net.imagej.ImageJService
    • net.imagej.ui.swing.ops.OpFinderService
  • net.imagej.ui.swing.ops.OpFinderService
  • org.scijava.plugin.RichPlugin (also extends org.scijava.Contextual, org.scijava.plugin.HasPluginInfo, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.Prioritized, org.scijava.plugin.SciJavaPlugin)
    • net.imagej.ImageJService
      • net.imagej.ui.swing.ops.OpFinderService
    • net.imagej.ui.swing.ops.OpFinderService
    • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable)
      • net.imagej.ImageJService
        • net.imagej.ui.swing.ops.OpFinderService
      • net.imagej.ui.swing.ops.OpFinderService
  • org.scijava.service.Service (also extends org.scijava.Disposable, org.scijava.Initializable, org.scijava.plugin.RichPlugin)
    • net.imagej.ImageJService
      • net.imagej.ui.swing.ops.OpFinderService
    • net.imagej.ui.swing.ops.OpFinderService
• bdv.viewer.ViewerState
• bdv.viewer.ViewerStateChangeListener
• spim.fiji.spimdata.explorer.popup.ViewExplorerSetable
• mpicbg.spim.data.registration.ViewTransform
  • mpicbg.spim.data.registration.ViewTransformGeneric
• bdv.util.VirtualChannels.VirtualChannel
• bdv.viewer.VisibilityAndGrouping.UpdateListener
• org.janelia.thickness.inference.visitor.Visitor
• bdv.img.cache.VolatileCachedCellImg.Get<T>
• bdv.viewer.render.VolatileProjector
• bdv.util.volatiles.VolatileView<T,V>
• ij3d.Volume.InputImage
• ij3d.Volume.Loader
  • voltex.VoltexVolume.VoltexLoader
• fiji.plugin.trackmate.gui.wizard.WizardSequence
• mpicbg.spim.data.generic.sequence.XmlIoBasicImgLoader<T>
• org.janelia.thickness.plugin.ZPositionCorrection.VisitorFactory

Annotation Type Hierarchy

• mpicbg.spim.data.generic.base.ViewSetupAttributeIo (implements java.lang.annotation.Annotation)
• mpicbg.spim.data.generic.sequence.ImgLoaderIo (implements java.lang.annotation.Annotation)

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • PIV_analyser.WINDOW_SIZE
    • voltex.Mask.BlendMethod
    • voltex.Mask.BlendSource
    • fiji.util.ArrowShape.ArrowStyle
    • sc.fiji.coloc.Coloc_2.RoiConfiguration
    • sc.fiji.coloc.algorithms.PearsonsCorrelation.Implementation
    • sc.fiji.coloc.algorithms.Histogram2D.DrawingFlags
    • sc.fiji.coloc.algorithms.AutoThresholdRegression.Implementation
    • sc.fiji.coloc.gadgets.ThresholdMode
    • sc.fiji.coloc.gadgets.MaskFactory.CombinationMode
    • sc.fiji.coloc.gadgets.DataContainer.MaskType
    • plugin.Lasso.Mode
    • fiji.analyze.directionality.Directionality_.AnalysisMethod
    • edu.utexas.clm.archipelago.Cluster.ClusterState
    • edu.utexas.clm.archipelago.network.node.ClusterNodeState
    • edu.utexas.clm.archipelago.listen.MessageType
    • fiji.Wiki_Editor.Mode
    • fiji.Wiki_Editor.Format
    • graphcut.Terminal
    • org.imagearchive.lsm.toolbox.info.scaninfo.DataType
    • mpicbg.spim.registration.segmentation.NucleiConfiguration.RotationAxis
    • mpicbg.spim.io.SPIMConfiguration.SegmentationTypes
    • mpicbg.spim.segmentation.InteractiveIntegral.ValueChange
    • mpicbg.spim.segmentation.InteractiveDoG.ValueChange
    • mpicbg.spim.postprocessing.deconvolution2.LRFFT.PSFTYPE
    • spim.fiji.plugin.Interest_Point_Registration.RegistrationType
    • spim.process.fusion.deconvolution.ProcessForDeconvolution.WeightType
    • spim.process.fusion.deconvolution.MVDeconFFT.PSFTYPE
    • spim.process.fusion.weightedavg.WeightedAverageFusion.WeightedAvgFusionType
    • spim.process.fusion.boundingbox.AutomaticReorientation.Reorientation
    • spim.process.cuda.CUDASeparableConvolutionFunctions.OutOfBounds
    • fiji.plugin.trackmate.Dimension
    • fiji.plugin.trackmate.util.FileChooser.DialogType
    • fiji.plugin.trackmate.util.FileChooser.SelectionMode
    • fiji.plugin.trackmate.tracking.overlap.OverlapTracker.IoUCalculation
    • fiji.plugin.trackmate.gui.wizard.TransitionAnimator.Direction
    • fiji.plugin.trackmate.gui.displaysettings.DisplaySettings.TrackDisplayMode
    • fiji.plugin.trackmate.gui.displaysettings.DisplaySettings.TrackMateObject
    • trainableSegmentation.unsupervised.ColorClustering.Channel
    • org.janelia.vaa3d.reader.V3dRawImageStream.Format
    • org.janelia.it.jacs.shared.ffmpeg.FFMpegLoader.ImageMode
    • mpicbg.imglib.type.label.BasePairBitType.Base
    • mpicbg.imglib.algorithm.fft.FourierTransform.PreProcessing
    • mpicbg.imglib.algorithm.fft.FourierTransform.Rearrangement
    • mpicbg.imglib.algorithm.fft.FourierTransform.FFTOptimization
    • mpicbg.imglib.algorithm.Precision.PrecisionReal
    • mpicbg.imglib.algorithm.Precision.PrecisionInteger
    • mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian.SpecialPoint
    • script.imglib.algorithm.fn.Morph.Shape
    • script.imglib.algorithm.fn.AbstractAffine3D.Mode
    • imglib.ops.observer.IterationStatus.Message
    • levelsets.ij.StateContainer.States
    • levelsets.ij.LevelSet.preprocessChoices
    • levelsets.algorithm.LevelSetFactory.Parameter
    • org.janelia.thickness.inference.InferFromMatrix.RegularizationType
    • sc.fiji.snt.SNT.SearchType
    • sc.fiji.snt.SNT.SearchImageType
    • sc.fiji.snt.SNT.CostType
    • sc.fiji.snt.SNT.HeuristicType
    • sc.fiji.snt.SNT.FilterType
    • sc.fiji.snt.FillManagerUI.State
    • sc.fiji.snt.FillConverter.ResultType
    • sc.fiji.snt.tracing.BiSearchNode.State
    • sc.fiji.snt.viewer.Viewer3D.ViewMode
    • sc.fiji.snt.gui.IconFactory.GLYPH
    • sc.fiji.snt.analysis.ProfileProcessor.Metric
    • sc.fiji.snt.analysis.ProfileProcessor.Shape
    • mpicbg.imagefeatures.FloatArray2DScaleOctave.State
    • loci.plugins.util.LibraryChecker.Library
    • loci.plugins.in.ImportStep
    • bdv.viewer.ViewerStateChange
    • bdv.viewer.ViewerPanel.AlignPlane
    • bdv.viewer.Interpolation
    • bdv.viewer.DisplayMode
    • bdv.viewer.WarpNavigationActions.rotationDirections2d
    • bdv.viewer.animate.TextOverlayAnimator.TextPosition
    • bigwarp.BigWarpExporter.ParallelizationPolicy
    • bigwarp.BigWarpActions.AlignViewerPanelAction.TYPE
    • bigwarp.BigWarp.WarpVisType
    • bigwarp.source.GridSource.GRID_TYPE
    • bdv.util.AxisOrder (implements net.imglib2.EuclideanSpace)
    • bdv.util.Prefs.OverlayPosition
    • bdv.tools.boundingbox.TransformedBoxOverlay.BoxDisplayMode
    • bdv.tools.boundingbox.TransformedBoxEditor.BoxSourceType
    • bdv.tools.boundingbox.BoxSelectionOptions.TimepointSelection
    • bdv.ij.export.imgloader.ImagePlusImgLoader.MinMaxOption
    • mpicbg.spim.data.generic.sequence.ImgLoaderHints (implements mpicbg.spim.data.generic.sequence.ImgLoaderHint)
    • org.janelia.intensity.LinearIntensityMap.Interpolation