Method Detail

• selectTrack

  public static void selectTrack(SelectionModel selectionModel)

  Sets the content of the specified selection model to be the whole tracks the selected spots belong to. Other selected edges are removed from the selection.

  Parameters:

  selectionModel - the SelectionModel that will be updated by this call.

• selectTrackDownward

  public static void selectTrackDownward(SelectionModel selectionModel)

  Sets the content of the specified selection model to be the whole tracks the selected spots belong to, but searched for only forward in time (downward). Other selected edges are removed from the selection.

  Parameters:

  selectionModel - the SelectionModel that will be updated by this call.

• selectTrackUpward

  public static void selectTrackUpward(SelectionModel selectionModel)

  Sets the content of the specified selection model to be the whole tracks the selected spots belong to, but searched for only backward in time (backward). Other selected edges are removed from the selection.

  Parameters:

  selectionModel - the SelectionModel that will be updated by this call.

• linkSpots

  public static void linkSpots(Model model,
                               SelectionModel selectionModel)

  Links all the spots in the selection, in time-forward order.

  Parameters:

  model - the model to modify.

  selectionModel - the selection that contains the spots to link.

• featureEdgeComparator

  public static final Comparator<org.jgrapht.graph.DefaultWeightedEdge> featureEdgeComparator(String feature,
                                                                                              FeatureModel fm)

  A comparator used to sort edges by ascending feature values.

  Parameters:

  feature - the feature to use for comparison. It is the caller responsibility to ensure that all edges have the target feature declared in the specified FeatureModel.

  fm - the FeatureModel to read feature values from.

  Returns:

  a new Comparator.

• featureTrackComparator

  public static final Comparator<Integer> featureTrackComparator(String feature,
                                                                 FeatureModel fm)

  A comparator used to sort tracks by ascending feature values.

  Parameters:

  feature - the feature to use for comparison. It is the caller responsibility to ensure that all tracks have the target feature declared in the specified FeatureModel.

  fm - the FeatureModel to read feature values from.

  Returns:

  a new Comparator.