DescriptorParameters (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- plugin.DescriptorParameters

public class DescriptorParameters
extends Object

Field Summary

Fields
Modifier and Type	Field and Description
`static int`	`brightestNPoints` Just keep the brightest N points of all detections
`int`	`channel1`
`int`	`channel2`
`static String`	`correspondenceDirectory` Writes out all corresponding points of all pairs if this is set to a directory
`int`	`dimensionality`
`String`	`directory`
`static boolean`	`filterRANSAC` if true we use filterRANSAC, otherwise only RANSAC
`boolean`	`fixFirstTile`
`int`	`fuse`
`int`	`globalOpt`
`protected AbstractModel<?>`	`initialModel`
`ArrayList<PointMatch>`	`inliers`
`int`	`interpolation`
`int`	`iterations`
`double`	`lambda`
`int`	`localization`
`boolean`	`lookForMaxima`
`boolean`	`lookForMinima`
`static double`	`max`
`static int`	`maxIterations` if there is a ROI designed, how many iterations
`static float`	`maxTrust` Max trust: reject candidates with a cost larger than maxTrust * median cost
`static double`	`min`
`static float`	`minInlierFactor` How many times more inliers are required than the minimum number of correspondences required for the model.
`static float`	`minInlierRatio` minimal number of inliers to number of candidates in RANSAC
`static int`	`minMaxType` 0 == compute per image (per timepoint/channel individually) 1 == compute global min/max 2 == define min/max
`static double`	`minSimilarity` How similar two descriptors at least have to be
`AbstractModel<?>`	`model`
`InvertibleBoundable`	`model1`
`InvertibleBoundable`	`model2`
`int`	`numNeighbors`
`static boolean`	`printAllSimilarities`
`int`	`range`
`static int`	`ransacIterations` How many iterations for a RANSAC
`double`	`ransacThreshold`
`boolean`	`reApply`
`int`	`redundancy`
`int[]`	`region`
`boolean`	`regularize`
`Roi`	`roi1`
`Roi`	`roi2`
`boolean`	`setPointsRois`
`double[]`	`sigma`
`double`	`sigma1`
`double`	`sigma2`
`double`	`significance`
`boolean`	`silent`
`boolean`	`similarOrientation`
`boolean`	`storeModels`
`boolean`	`storePoints`
`double`	`threshold`

Constructor Summary

Constructors
Constructor and Description

DescriptorParameters()

Constructors
Constructor and Description
`DescriptorParameters()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type Method and Description

AbstractModel<?> getInitialModel()
- Methods inherited from class java.lang.Object
  clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`AbstractModel<?>`	`getInitialModel()`

Field Detail

ransacIterations
```
public static int ransacIterations
```
How many iterations for a RANSAC

minInlierRatio
```
public static float minInlierRatio
```
minimal number of inliers to number of candidates in RANSAC

maxIterations
```
public static int maxIterations
```
if there is a ROI designed, how many iterations

maxTrust
```
public static float maxTrust
```
Max trust: reject candidates with a cost larger than maxTrust * median cost

minInlierFactor
```
public static float minInlierFactor
```
How many times more inliers are required than the minimum number of correspondences required for the model. E.g. AffineModel3d needs at least 4 corresponences, so we reject if the number of inliers is smaller than minInlierFactor*4

filterRANSAC
```
public static boolean filterRANSAC
```
if true we use filterRANSAC, otherwise only RANSAC

minSimilarity
```
public static double minSimilarity
```
How similar two descriptors at least have to be

correspondenceDirectory
```
public static String correspondenceDirectory
```
Writes out all corresponding points of all pairs if this is set to a directory

brightestNPoints
```
public static int brightestNPoints
```
Just keep the brightest N points of all detections

minMaxType
```
public static int minMaxType
```
0 == compute per image (per timepoint/channel individually) 1 == compute global min/max 2 == define min/max

min
```
public static double min
```

max
```
public static double max
```

printAllSimilarities

public static boolean printAllSimilarities

dimensionality
```
public int dimensionality
```

sigma1
```
public double sigma1
```

sigma2
```
public double sigma2
```

threshold
```
public double threshold
```

localization
```
public int localization
```

lookForMaxima
```
public boolean lookForMaxima
```

lookForMinima
```
public boolean lookForMinima
```

model
```
public AbstractModel<?> model
```

similarOrientation
```
public boolean similarOrientation
```

numNeighbors
```
public int numNeighbors
```

redundancy
```
public int redundancy
```

significance
```
public double significance
```

ransacThreshold
```
public double ransacThreshold
```

channel1
```
public int channel1
```

channel2
```
public int channel2
```

regularize
```
public boolean regularize
```

fixFirstTile
```
public boolean fixFirstTile
```

lambda
```
public double lambda
```

globalOpt
```
public int globalOpt
```

range
```
public int range
```

directory
```
public String directory
```

reApply
```
public boolean reApply
```

roi1
```
public Roi roi1
```

roi2
```
public Roi roi2
```

setPointsRois
```
public boolean setPointsRois
```

silent
```
public boolean silent
```

fuse
```
public int fuse
```

interpolation
```
public int interpolation
```

initialModel

protected AbstractModel<?> initialModel

storePoints
```
public boolean storePoints
```

storeModels
```
public boolean storeModels
```

inliers
```
public ArrayList<PointMatch> inliers
```

model1
```
public InvertibleBoundable model1
```

model2
```
public InvertibleBoundable model2
```

sigma
```
public double[] sigma
```

region
```
public int[] region
```

iterations
```
public int iterations
```

Constructor Detail
- DescriptorParameters
```
public DescriptorParameters()
```

Method Detail

getInitialModel

public AbstractModel<?> getInitialModel()

Class DescriptorParameters

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

ransacIterations

minInlierRatio

maxIterations

maxTrust

minInlierFactor

filterRANSAC

minSimilarity

correspondenceDirectory

brightestNPoints

minMaxType

min

max

printAllSimilarities

dimensionality

sigma1

sigma2

threshold

localization

lookForMaxima

lookForMinima

model

similarOrientation

numNeighbors

redundancy

significance

ransacThreshold

channel1

channel2

regularize

fixFirstTile

lambda

globalOpt

range

directory

reApply

roi1

roi2

setPointsRois

silent

fuse

interpolation

initialModel

storePoints

storeModels

inliers

model1

model2

sigma

region

iterations

Constructor Detail

DescriptorParameters

Method Detail

getInitialModel