AlignLayersTask (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- mpicbg.trakem2.align.AlignLayersTask

```
public final class AlignLayersTask
extends Object
```
Register a range of layers using linear or non-linear transformations.

Version:

0.1a

Author:

Stephan Saalfeld saalfeld@mpi-cbg.de, Ignacio Arganda ignacio.arganda@gmail.com

Field Summary

Fields
Modifier and Type	Field and Description
`protected static int`	`BUNWARPJ`
`protected static int`	`ELASTIC`
`protected static Param`	`elasticParam`
`protected static int`	`LINEAR`
`protected static int`	`mode`
`protected static boolean`	`propagateTransformAfter`
`protected static boolean`	`propagateTransformBefore`

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method and Description
`static void`	`alignLayers(Layer l)`
`static void`	`alignLayers(Layer l, Rectangle fov)`
`static void`	`alignLayersLinearlyJob(LayerSet layerSet, int first, int last, boolean propagateTransform, Rectangle fov, Filter<Patch> filter)`
`static void`	`alignLayersNonLinearlyJob(LayerSet layerSet, int first, int last, boolean propagateTransform, Rectangle fov, Filter<Patch> filter)`
`static Bureaucrat`	`alignLayersTask(Layer l)`
`static Bureaucrat`	`alignLayersTask(Layer l, Rectangle fov)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

LINEAR
```
protected static int LINEAR
```

BUNWARPJ
```
protected static int BUNWARPJ
```

ELASTIC
```
protected static int ELASTIC
```

mode
```
protected static int mode
```

propagateTransformBefore

protected static boolean propagateTransformBefore

propagateTransformAfter

protected static boolean propagateTransformAfter

elasticParam
```
protected static Param elasticParam
```

Method Detail

alignLayersTask

public static final Bureaucrat alignLayersTask(Layer l)

alignLayersTask

public static final Bureaucrat alignLayersTask(Layer l,
                                               Rectangle fov)

alignLayers

public static final void alignLayers(Layer l)
                              throws Exception

Throws:: Exception

alignLayers

public static final void alignLayers(Layer l,
                                     Rectangle fov)
                              throws Exception

Throws:: Exception

alignLayersLinearlyJob

public static final void alignLayersLinearlyJob(LayerSet layerSet,
                                                int first,
                                                int last,
                                                boolean propagateTransform,
                                                Rectangle fov,
                                                Filter<Patch> filter)

alignLayersNonLinearlyJob

public static final void alignLayersNonLinearlyJob(LayerSet layerSet,
                                                   int first,
                                                   int last,
                                                   boolean propagateTransform,
                                                   Rectangle fov,
                                                   Filter<Patch> filter)

Class AlignLayersTask

Field Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

LINEAR

BUNWARPJ

ELASTIC

mode

propagateTransformBefore

propagateTransformAfter

elasticParam

Method Detail

alignLayersTask

alignLayersTask

alignLayers

alignLayers

alignLayersLinearlyJob

alignLayersNonLinearlyJob