Field Detail

• defaultR1

  public static int defaultR1

• defaultR2

  public static int defaultR2

• defaultT

  public static double defaultT

• defaultRadius1

  public static int[] defaultRadius1

• defaultRadius2

  public static int[] defaultRadius2

• defaultThreshold

  public static double[] defaultThreshold

• defaultFindMin

  public static boolean[] defaultFindMin

• defaultFindMax

  public static boolean[] defaultFindMax

Constructor Detail

• DifferenceOfMean

  public DifferenceOfMean(SpimData2 spimData,
                          List<ViewId> viewIdsToProcess)

Method Detail

• getDescription

  public String getDescription()

  Specified by:

  getDescription in class InterestPointDetection

  Returns:

  - to be displayed in the generic dialog

• newInstance

  public DifferenceOfMean newInstance(SpimData2 spimData,
                                      List<ViewId> viewIdsToProcess)

  Specified by:

  newInstance in class InterestPointDetection

  viewIdsToProcess - - which view id's to segment

  Returns:

  - a new instance without any special properties

• findInterestPoints

  public HashMap<ViewId,List<InterestPoint>> findInterestPoints(TimePoint t)

  Description copied from class: InterestPointDetection
  Perform the interestpoint detection for one timepoint

  Specified by:

  findInterestPoints in class InterestPointDetection

  Returns:

• setDefaultValues

  protected boolean setDefaultValues(Channel channel,
                                     int brightness)

  Specified by:

  setDefaultValues in class DifferenceOf

• setAdvancedValues

  protected boolean setAdvancedValues(Channel channel)

  Specified by:

  setAdvancedValues in class DifferenceOf

• setInteractiveValues

  protected boolean setInteractiveValues(Channel channel)

  Specified by:

  setInteractiveValues in class DifferenceOf

• init

  protected void init(int numChannels)

  This is only necessary to make static objects so that the ImageJ dialog remembers choices for the right channel

  Specified by:

  init in class DifferenceOf

  Parameters:

  numChannels - - the TOTAL number of channels (not only the ones to process)

• getParameters

  public String getParameters(int channelId)

  Specified by:

  getParameters in class InterestPointDetection

  Returns:

  - stored in the XML so that it is reproducible how the points were segmented

• addAddtionalParameters

  protected void addAddtionalParameters(GenericDialog gd)

  Specified by:

  addAddtionalParameters in class DifferenceOf

• queryAdditionalParameters

  protected boolean queryAdditionalParameters(GenericDialog gd)

  Specified by:

  queryAdditionalParameters in class DifferenceOf