NearestNeighborTrackerFactory (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- fiji.plugin.trackmate.tracking.kdtree.NearestNeighborTrackerFactory

All Implemented Interfaces:: SpotTrackerFactory, TrackMateModule, SciJavaPlugin

public class NearestNeighborTrackerFactory
extends Object
implements SpotTrackerFactory

Field Summary

Fields
Modifier and Type Field and Description

static String INFO_TEXT

static String NAME

static String TRACKER_KEY

Fields
Modifier and Type	Field and Description
`static String`	`INFO_TEXT`
`static String`	`NAME`
`static String`	`TRACKER_KEY`

Constructor Summary

Constructors
Constructor and Description

NearestNeighborTrackerFactory()

Constructors
Constructor and Description
`NearestNeighborTrackerFactory()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`boolean`	`checkSettingsValidity(Map<String,Object> settings)` Checks the validity of the given settings map for the tracker.
`SpotTracker`	`create(SpotCollection spots, Map<String,Object> settings)` Instantiates and returns a new `SpotTracker` configured to operate on the specified `SpotCollection`, using the specified settins map.
`Map<String,Object>`	`getDefaultSettings()` Returns a new default settings map suitable for the tracker Settings are instantiated with default values.
`String`	`getErrorMessage()` Returns a meaningful error message for the last action on this factory.
`ImageIcon`	`getIcon()` Returns the icon for this action.
`String`	`getInfoText()` Returns a html string containing a descriptive information about this module.
`String`	`getKey()` Returns a unique identifier of this module.
`String`	`getName()` Returns the human-compliant name of this module.
`ConfigurationPanel`	`getTrackerConfigurationPanel(Model model)` Returns a new GUI panel able to configure the settings suitable for the target tracker identified by the key parameter.
`boolean`	`marshall(Map<String,Object> settings, org.jdom2.Element element)` Marshalls a settings map to a JDom element, ready for saving to XML.
`String`	`toString(Map<String,Object> sm)` A utility method that builds a string representation of a settings map owing to the currently selected tracker in this provider.
`boolean`	`unmarshall(org.jdom2.Element element, Map<String,Object> settings)` Un-marshall a JDom element to update a settings map, and sets the target tracker of this provider from the element.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface fiji.plugin.trackmate.TrackMateModule
forbidMultithreading

- Field Detail
  - TRACKER_KEY
```
public static final String TRACKER_KEY
```
    See Also:
    
    Constant Field Values
  - NAME
```
public static final String NAME
```
    See Also:
    
    Constant Field Values
  - INFO_TEXT
```
public static final String INFO_TEXT
```
    See Also:
    
    Constant Field Values
- Constructor Detail
  - NearestNeighborTrackerFactory
```
public NearestNeighborTrackerFactory()
```
- Method Detail
  - getInfoText
```
public String getInfoText()
```
    Description copied from interface: TrackMateModule
    
    Returns a html string containing a descriptive information about this module.
    
    Specified by:
    
    getInfoText in interface TrackMateModule
    
    Returns:
    
    a html string.
  - getIcon
```
public ImageIcon getIcon()
```
    Description copied from interface: TrackMateModule
    
    Returns the icon for this action. Can be null.
    
    Specified by:
    
    getIcon in interface TrackMateModule
    
    Returns:
    
    the icon. Returns null to be safely ignored.
  - getKey
```
public String getKey()
```
    Description copied from interface: TrackMateModule
    
    Returns a unique identifier of this module.
    
    Specified by:
    
    getKey in interface TrackMateModule
    
    Returns:
    
    the action key, as a string.
  - getName
```
public String getName()
```
    Description copied from interface: TrackMateModule
    
    Returns the human-compliant name of this module.
    
    Specified by:
    
    getName in interface TrackMateModule
    
    Returns:
    
    the name, as a String.
  - create
```
public SpotTracker create(SpotCollection spots,
                          Map<String,Object> settings)
```
    Description copied from interface: SpotTrackerFactory
    
    Instantiates and returns a new SpotTracker configured to operate on the specified SpotCollection, using the specified settins map.
    
    Specified by:
    
    create in interface SpotTrackerFactory
    
    Parameters:
    
    spots - the SpotCollection containing the spots to track.
    
    settings - the settings map configuring the tracker.
    
    Returns:
    
    a new SpotTracker instance.
  - getTrackerConfigurationPanel
```
public ConfigurationPanel getTrackerConfigurationPanel(Model model)
```
    Description copied from interface: SpotTrackerFactory
    
    Returns a new GUI panel able to configure the settings suitable for the target tracker identified by the key parameter.
    
    Specified by:
    
    getTrackerConfigurationPanel in interface SpotTrackerFactory
    
    Parameters:
    
    model - the model that will be modified by the target tracker.
    
    Returns:
    
    a new configuration panel.
  - marshall
```
public boolean marshall(Map<String,Object> settings,
                        org.jdom2.Element element)
```
    Description copied from interface: SpotTrackerFactory
    
    Marshalls a settings map to a JDom element, ready for saving to XML. The element is updated with new attributes.
    Only parameters specific to the concrete tracker factory are marshalled. The element also always receive an attribute named that saves the target SpotTracker key.
    
    Specified by:
    
    marshall in interface SpotTrackerFactory
    
    Returns:
    
    true if marshalling was successful. If not, check SpotTrackerFactory.getErrorMessage()
  - unmarshall
```
public boolean unmarshall(org.jdom2.Element element,
                          Map<String,Object> settings)
```
    Description copied from interface: SpotTrackerFactory
    
    Un-marshall a JDom element to update a settings map, and sets the target tracker of this provider from the element.
    Concretely: the the specific settings map for the targeted tracker is updated from the element.
    
    Specified by:
    
    unmarshall in interface SpotTrackerFactory
    
    Parameters:
    
    element - the JDom element to read from.
    
    settings - the map to update. Is cleared prior to updating, so that it contains only the parameters specific to the target tracker.
    
    Returns:
    
    true if unmarshalling was successful. If not, check SpotTrackerFactory.getErrorMessage()
  - toString
```
public String toString(Map<String,Object> sm)
```
    Description copied from interface: SpotTrackerFactory
    
    A utility method that builds a string representation of a settings map owing to the currently selected tracker in this provider.
    
    Specified by:
    
    toString in interface SpotTrackerFactory
    
    Parameters:
    
    sm - the map to echo.
    
    Returns:
    
    a string representation of the map.
  - getDefaultSettings
```
public Map<String,Object> getDefaultSettings()
```
    Description copied from interface: SpotTrackerFactory
    
    Returns a new default settings map suitable for the tracker Settings are instantiated with default values. is returned.
    
    Specified by:
    
    getDefaultSettings in interface SpotTrackerFactory
    
    Returns:
    
    a settings map.
  - checkSettingsValidity
```
public boolean checkSettingsValidity(Map<String,Object> settings)
```
    Description copied from interface: SpotTrackerFactory
    
    Checks the validity of the given settings map for the tracker. The validity check is strict: we check that all needed parameters are here and are of the right class, and that there is no extra unwanted parameters.
    
    Specified by:
    
    checkSettingsValidity in interface SpotTrackerFactory
    
    Returns:
    
    true if the settings map can be used with the target factory. If not, check SpotTrackerFactory.getErrorMessage()
  - getErrorMessage
```
public String getErrorMessage()
```
    Description copied from interface: SpotTrackerFactory
    
    Returns a meaningful error message for the last action on this factory.
    
    Specified by:
    
    getErrorMessage in interface SpotTrackerFactory
    
    Returns:
    
    an error message.
    
    See Also:
    
    SpotTrackerFactory.marshall(Map, Element), SpotTrackerFactory.unmarshall(Element, Map), SpotTrackerFactory.checkSettingsValidity(Map)

Class NearestNeighborTrackerFactory

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Methods inherited from interface fiji.plugin.trackmate.TrackMateModule

Field Detail

TRACKER_KEY

NAME

INFO_TEXT

Constructor Detail

NearestNeighborTrackerFactory

Method Detail

getInfoText

getIcon

getKey

getName

create

getTrackerConfigurationPanel

marshall

unmarshall

toString

getDefaultSettings

checkSettingsValidity

getErrorMessage