NamedPointSet (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- landmarks.NamedPointSet

public class NamedPointSet
extends Object

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

static class NamedPointSet.PointsFileException

Nested Classes
Modifier and Type	Class and Description
`static class`	`NamedPointSet.PointsFileException`

Constructor Summary

Constructors
Constructor and Description

NamedPointSet()

Constructors
Constructor and Description
`NamedPointSet()`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`add(NamedPointWorld namedPointWorld)`
`NamedPointWorld`	`addNewPoint()`
`NamedPointWorld`	`delete(int i)`
`boolean`	`equals(NamedPointSet other)`
`static NamedPointSet`	`forImage(ij.ImagePlus imagePlus)`
`static NamedPointSet`	`forImage(ij.ImagePlus imagePlus, String imageFilename)`
`static NamedPointSet`	`forImage(String imageFilename)`
`static NamedPointSet`	`fromBufferedReader(BufferedReader br, ij.ImagePlus imagePlus, String imageFilename)`
`static NamedPointSet`	`fromFile(File f)`
`static NamedPointSet`	`fromFile(File f, ij.ImagePlus imagePlus, String imageFilename)`
`static NamedPointSet`	`fromFile(String pointsFilename)`
`static NamedPointSet`	`fromFile(String pointsFilename, ij.ImagePlus imagePlus, String imageFilename)`
`static NamedPointSet`	`fromString(String s)`
`static NamedPointSet`	`fromString(String s, ij.ImagePlus imagePlus, String imageFilename)`
`NamedPointWorld`	`get(int i)`
`NamedPointWorld`	`get(String name)`
`int`	`getIndexOfPoint(String name)`
`Set<String>`	`getNamesAsSet()`
`NamedPointWorld`	`getPoint(String name)`
`Point3d[]`	`getPoint3DArrayForNames(String[] names)`
`String[]`	`getPointNames()`
`ListIterator`	`listIterator()`
`ArrayList<String>`	`namesSharedWith(NamedPointSet other)`
`ArrayList<String>`	`namesSharedWith(NamedPointSet other, boolean onlySetPoints)`
`boolean`	`renamePointTo(int i, String newName)`
`boolean`	`saveIGSPointsFile(String savePath)`
`boolean`	`savePointsFile(String savePath)`
`int`	`size()`
`String`	`toString()`
`NamedPointSet`	`transformPointsWith(OrderedTransformations o)`
`byte[]`	`xmlDataAsBytes()`
`String`	`xmlDataAsString()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail
- NamedPointSet
```
public NamedPointSet()
```

Method Detail

size
```
public int size()
```

listIterator
```
public ListIterator listIterator()
```

transformPointsWith

public NamedPointSet transformPointsWith(OrderedTransformations o)

getPoint

public NamedPointWorld getPoint(String name)

delete
```
public NamedPointWorld delete(int i)
```

get
```
public NamedPointWorld get(int i)
```

get

public NamedPointWorld get(String name)

getPointNames
```
public String[] getPointNames()
```

getIndexOfPoint

public int getIndexOfPoint(String name)

savePointsFile

public boolean savePointsFile(String savePath)

xmlDataAsString
```
public String xmlDataAsString()
```

xmlDataAsBytes
```
public byte[] xmlDataAsBytes()
```

saveIGSPointsFile

public boolean saveIGSPointsFile(String savePath)

add

public void add(NamedPointWorld namedPointWorld)

forImage

public static NamedPointSet forImage(ij.ImagePlus imagePlus)
                              throws NamedPointSet.PointsFileException

Throws:: NamedPointSet.PointsFileException

forImage

public static NamedPointSet forImage(String imageFilename)
                              throws NamedPointSet.PointsFileException

Throws:: NamedPointSet.PointsFileException

forImage

public static NamedPointSet forImage(ij.ImagePlus imagePlus,
                                     String imageFilename)
                              throws NamedPointSet.PointsFileException

Throws:: NamedPointSet.PointsFileException

fromFile

public static NamedPointSet fromFile(String pointsFilename)
                              throws NamedPointSet.PointsFileException

Throws:: NamedPointSet.PointsFileException

fromFile

public static NamedPointSet fromFile(String pointsFilename,
                                     ij.ImagePlus imagePlus,
                                     String imageFilename)
                              throws NamedPointSet.PointsFileException

Throws:: NamedPointSet.PointsFileException

fromFile

public static NamedPointSet fromFile(File f)
                              throws NamedPointSet.PointsFileException

Throws:: NamedPointSet.PointsFileException

fromFile

public static NamedPointSet fromFile(File f,
                                     ij.ImagePlus imagePlus,
                                     String imageFilename)
                              throws NamedPointSet.PointsFileException

Throws:: NamedPointSet.PointsFileException

fromString

public static NamedPointSet fromString(String s)

fromString

public static NamedPointSet fromString(String s,
                                       ij.ImagePlus imagePlus,
                                       String imageFilename)
                                throws NamedPointSet.PointsFileException

Throws:: NamedPointSet.PointsFileException

fromBufferedReader

public static NamedPointSet fromBufferedReader(BufferedReader br,
                                               ij.ImagePlus imagePlus,
                                               String imageFilename)
                                        throws NamedPointSet.PointsFileException

Throws:: NamedPointSet.PointsFileException

namesSharedWith

public ArrayList<String> namesSharedWith(NamedPointSet other)

namesSharedWith

public ArrayList<String> namesSharedWith(NamedPointSet other,
                                         boolean onlySetPoints)

getPoint3DArrayForNames

public Point3d[] getPoint3DArrayForNames(String[] names)

getNamesAsSet
```
public Set<String> getNamesAsSet()
```

equals

public boolean equals(NamedPointSet other)

toString
```
public String toString()
```
Overrides:

toString in class Object

renamePointTo

public boolean renamePointTo(int i,
                             String newName)

addNewPoint
```
public NamedPointWorld addNewPoint()
```

Class NamedPointSet

Nested Class Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

NamedPointSet

Method Detail

size

listIterator

transformPointsWith

getPoint

delete

get

get

getPointNames

getIndexOfPoint

savePointsFile

xmlDataAsString

xmlDataAsBytes

saveIGSPointsFile

add

forImage

forImage

forImage

fromFile

fromFile

fromFile

fromFile

fromString

fromString

fromBufferedReader

namesSharedWith

namesSharedWith

getPoint3DArrayForNames

getNamesAsSet

equals

toString

renamePointTo

addNewPoint