Constructor Detail

• Trainable_Segmentation

  public Trainable_Segmentation()

  Deprecated. 
  Basic constructor

• Trainable_Segmentation

  public Trainable_Segmentation(ij.ImagePlus trainingImage)

  Deprecated. 
  No GUI constructor

  Parameters:

  trainingImage - input image

Method Detail

• run

  public void run(String arg)

  Deprecated. 
  Plugin run method

  Specified by:

  run in interface ij.plugin.PlugIn

• writeDataToARFF

  public void writeDataToARFF(Instances data,
                              String filename)

  Deprecated. 
  Write current instances into an ARFF file

  Parameters:

  data - set of instances

  filename - ARFF file name

• readDataFromARFF

  public Instances readDataFromARFF(String filename)

  Deprecated. 
  Read ARFF file

  Parameters:

  filename - ARFF file name

  Returns:

  set of instances read from the file

• createTrainingInstances

  public Instances createTrainingInstances()

  Deprecated. 
  Create training instances out of the user markings

  Returns:

  set of instances

• trainClassifier

  public void trainClassifier()

  Deprecated. 
  Train classifier with the current instances

• applyClassifier

  public ij.ImagePlus applyClassifier(Instances data,
                                      int w,
                                      int h,
                                      int numThreads)

  Deprecated. 
  Apply current classifier to set of instances

  Parameters:

  data - set of instances

  w - image width

  h - image height

  numThreads - number of threads to create

  Returns:

  result image

• getClassifierDistribution

  public ij.ImagePlus[] getClassifierDistribution(Instances data,
                                                  int w,
                                                  int h,
                                                  int numThreads)

  Deprecated. 
  Apply current classifier to set of instances to get a probability distribution.

  Parameters:

  data - set of instances

  w - image width

  h - image height

  numThreads - number of threads to be used

  Returns:

  result image

• applyClassifierToTestData

  public void applyClassifierToTestData()

  Deprecated. 
  Apply classifier to test data

• createProbImgFromTestData

  public void createProbImgFromTestData()

  Deprecated. 
  Apply classifier to a set of images and create a multi-channel probability distribution image.

• applyClassifierToTestImage

  public ij.ImagePlus applyClassifierToTestImage(ij.ImagePlus testImage,
                                                 int numThreads)

  Deprecated. 
  Apply current classifier to image

  Parameters:

  testImage - test image (2D single image or stack)

  Returns:

  result image (classification)

• createProbImgFromTestData

  public ij.ImagePlus createProbImgFromTestData(ij.ImagePlus testImage,
                                                int numThreads)

  Deprecated. 
  Create multi-channel probability distribution image from image

  Parameters:

  testImage - test image (2D single image or stack)

  numThreads - number of threads to be used

  Returns:

  result image (probability distribution)

• loadTrainingData

  public void loadTrainingData()

  Deprecated. 
  Load previously saved data

• saveTrainingData

  public void saveTrainingData()

  Deprecated. 
  Save training model into a file

• showSettingsDialog

  public boolean showSettingsDialog()

  Deprecated. 
  Show advanced settings dialog

  Returns:

  false when canceled

• loadTrainingData

  public boolean loadTrainingData(String pathname)

  Deprecated. 
  Load training data (no GUI)

  Parameters:

  pathname - complete path name of the training data file (.arff)

  Returns:

  false if error

• getClassifiedImage

  public ij.ImagePlus getClassifiedImage()

  Deprecated. 
  Get current classification result

  Returns:

  classified image