Field Detail

• gridSizeXStatic

  public static int gridSizeXStatic

• gridSizeYStatic

  public static int gridSizeYStatic

• gridSizeZStatic

  public static int gridSizeZStatic

• overlapStatic

  public static double overlapStatic

• inputDirectoryStatic

  public static String inputDirectoryStatic

• fileNamesStatic

  public static String fileNamesStatic

• rgbOrderStatic

  public static String rgbOrderStatic

• tileConfStatic

  public static String tileConfStatic

• outputDirectoryStatic

  public static String outputDirectoryStatic

• writeOnlyTileConfStatic

  public static boolean writeOnlyTileConfStatic

• startXStatic

  public static int startXStatic

• startYStatic

  public static int startYStatic

• startZStatic

  public static int startZStatic

• startIStatic

  public static int startIStatic

• handleRGBStatic

  public static String handleRGBStatic

• fusionMethodStatic

  public static String fusionMethodStatic

• alphaStatic

  public static double alphaStatic

• thresholdRStatic

  public static double thresholdRStatic

• thresholdDisplacementRelativeStatic

  public static double thresholdDisplacementRelativeStatic

• thresholdDisplacementAbsoluteStatic

  public static double thresholdDisplacementAbsoluteStatic

• previewOnlyStatic

  public static boolean previewOnlyStatic

• computeOverlapStatic

  public static boolean computeOverlapStatic

Constructor Detail

• Stitch_Image_Grid_Sequence

  public Stitch_Image_Grid_Sequence()

Method Detail

• run

  public void run(String arg0)

  Specified by:

  run in interface ij.plugin.PlugIn

• stitchImageGridSequence

  public static void stitchImageGridSequence(int nSections,
                                             String filenames,
                                             String inputDirectory,
                                             GridLayout gridLayout,
                                             String handleRGB,
                                             String fusionMethod,
                                             String outputFileName,
                                             String outputDirectory,
                                             double overlap,
                                             int startX,
                                             int startY,
                                             int startZ,
                                             int startI,
                                             boolean writeOnlyOutput,
                                             boolean previewOnly,
                                             boolean computeOverlap)

  Stitch sequence of image grids (all grids must have the same X/Y configuration)

  Parameters:

  nSections -

  filenames -

  inputDirectory -

  gridLayout -

  handleRGB -

  fusionMethod -

  outputFileName -

  outputDirectory -

  overlap -

  startX -

  startY -

  startZ -

  startI -

  writeOnlyOutput -

  previewOnly -

  computeOverlap -