Field Detail

• benchmark

  public final SegmentationBenchmark benchmark

Constructor Detail

• InterestPointDetection

  public InterestPointDetection(SpimData2 spimData,
                                List<ViewId> viewIdsToProcess)

  Parameters:

  spimData -

  viewIdsToProcess - - which view id's to segment

Method Detail

• getViewIdsToProcess

  public List<ViewId> getViewIdsToProcess()

• getBenchmark

  public SegmentationBenchmark getBenchmark()

• findInterestPoints

  public abstract HashMap<ViewId,List<InterestPoint>> findInterestPoints(TimePoint tp)

  Perform the interestpoint detection for one timepoint

  Returns:

• queryParameters

  public abstract boolean queryParameters(boolean downsample,
                                          boolean defineAnisotropy,
                                          boolean additionalSmoothing,
                                          boolean setMinMax,
                                          boolean limitDetections)

  Query the necessary parameters for the interestpoint detection

  Parameters:

  downsample - - whether to downsample the images before performing the blob detection

  defineAnisotropy - - whether to use/query for anisotropy in resolution of the data

  additionalSmoothing - - smooth in certain dimensions before computing the segmentation

  setMinMax - - whether to define minimal and maximal intensity relative to whom everything is normalized to [0...1]

  Returns:

• newInstance

  public abstract InterestPointDetection newInstance(SpimData2 spimData,
                                                     List<ViewId> viewIdsToProcess)

  Parameters:

  spimData -

  viewIdsToProcess - - which view id's to segment

  Returns:

  - a new instance without any special properties

• getDescription

  public abstract String getDescription()

  Returns:

  - to be displayed in the generic dialog

• getParameters

  public abstract String getParameters(int channelId)

  Returns:

  - stored in the XML so that it is reproducible how the points were segmented