Stitch_Multiple_Series_File (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- Stitch_Multiple_Series_File

All Implemented Interfaces:

ij.plugin.PlugIn
```
public class Stitch_Multiple_Series_File
extends Object
implements ij.plugin.PlugIn
```
Author:

Stephan Preibisch (stephan.preibisch@gmx.de)

Field Summary

Fields
Modifier and Type	Field and Description
`double`	`alpha`
`static double`	`alphaStatic`
`static boolean`	`computeOverlapStatic`
`static String`	`fileNameStatic`
`static String`	`fusionMethodStatic`
`static boolean`	`ignoreCalibrationStatic`
`static boolean`	`ignoreZStageStatic`
`static boolean`	`invertXStatic`
`static boolean`	`invertYStatic`
`static double`	`overlapStatic`
`static boolean`	`previewOnlyStatic`
`double`	`thresholdDisplacementAbsolute`
`static double`	`thresholdDisplacementAbsoluteStatic`
`double`	`thresholdDisplacementRelative`
`static double`	`thresholdDisplacementRelativeStatic`
`double`	`thresholdR`
`static double`	`thresholdRStatic`

Constructor Summary

Constructors
Constructor and Description

Stitch_Multiple_Series_File()

Constructors
Constructor and Description
`Stitch_Multiple_Series_File()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`protected ArrayList<ImageInformation>`	`parseMultiSeriesFile(String filename, double increaseOverlap, boolean ignoreCalibration, boolean invertX, boolean invertY, boolean ignoreZStage)`
`void`	`run(String arg0)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

alpha
```
public double alpha
```

thresholdR
```
public double thresholdR
```

thresholdDisplacementRelative

public double thresholdDisplacementRelative

thresholdDisplacementAbsolute

public double thresholdDisplacementAbsolute

fileNameStatic
```
public static String fileNameStatic
```

computeOverlapStatic

public static boolean computeOverlapStatic

overlapStatic
```
public static double overlapStatic
```

invertXStatic
```
public static boolean invertXStatic
```

invertYStatic
```
public static boolean invertYStatic
```

ignoreZStageStatic

public static boolean ignoreZStageStatic

fusionMethodStatic

public static String fusionMethodStatic

alphaStatic
```
public static double alphaStatic
```

thresholdRStatic
```
public static double thresholdRStatic
```

thresholdDisplacementRelativeStatic

public static double thresholdDisplacementRelativeStatic

thresholdDisplacementAbsoluteStatic

public static double thresholdDisplacementAbsoluteStatic

previewOnlyStatic

public static boolean previewOnlyStatic

ignoreCalibrationStatic

public static boolean ignoreCalibrationStatic

Constructor Detail
- Stitch_Multiple_Series_File
```
public Stitch_Multiple_Series_File()
```

Method Detail

run
```
public void run(String arg0)
```
Specified by:

run in interface ij.plugin.PlugIn

parseMultiSeriesFile

protected ArrayList<ImageInformation> parseMultiSeriesFile(String filename,
                                                           double increaseOverlap,
                                                           boolean ignoreCalibration,
                                                           boolean invertX,
                                                           boolean invertY,
                                                           boolean ignoreZStage)

Class Stitch_Multiple_Series_File

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

alpha

thresholdR

thresholdDisplacementRelative

thresholdDisplacementAbsolute

fileNameStatic

computeOverlapStatic

overlapStatic

invertXStatic

invertYStatic

ignoreZStageStatic

fusionMethodStatic

alphaStatic

thresholdRStatic

thresholdDisplacementRelativeStatic

thresholdDisplacementAbsoluteStatic

previewOnlyStatic

ignoreCalibrationStatic

Constructor Detail

Stitch_Multiple_Series_File

Method Detail

run

parseMultiSeriesFile