ContentInstant (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- org.scijava.java3d.SceneGraphObject
- - org.scijava.java3d.Node
  - - org.scijava.java3d.Group
    - - org.scijava.java3d.BranchGroup
      - ij3d.ContentInstant

All Implemented Interfaces:: ContentConstants, UniverseListener

public class ContentInstant
extends BranchGroup
implements UniverseListener, ContentConstants

Field Summary

Fields
Modifier and Type	Field and Description
`protected int[]`	`aLUT`
`protected int[]`	`bLUT`
`protected boolean[]`	`channels`
`protected Color3f`	`color`
`protected int[]`	`gLUT`
`protected ij.ImagePlus`	`image`
`protected TransformGroup`	`localRotate`
`protected TransformGroup`	`localTranslate`
`protected int`	`resamplingF`
`protected int[]`	`rLUT`
`protected boolean`	`selected`
`protected boolean`	`shaded`
`protected int`	`threshold`
`protected float`	`transparency`
`protected int`	`type`

Fields inherited from class org.scijava.java3d.BranchGroup
ALLOW_DETACH

Fields inherited from class org.scijava.java3d.Group
ALLOW_CHILDREN_EXTEND, ALLOW_CHILDREN_READ, ALLOW_CHILDREN_WRITE, ALLOW_COLLISION_BOUNDS_READ, ALLOW_COLLISION_BOUNDS_WRITE

Fields inherited from class org.scijava.java3d.Node
ALLOW_AUTO_COMPUTE_BOUNDS_READ, ALLOW_AUTO_COMPUTE_BOUNDS_WRITE, ALLOW_BOUNDS_READ, ALLOW_BOUNDS_WRITE, ALLOW_COLLIDABLE_READ, ALLOW_COLLIDABLE_WRITE, ALLOW_LOCAL_TO_VWORLD_READ, ALLOW_LOCALE_READ, ALLOW_PARENT_READ, ALLOW_PICKABLE_READ, ALLOW_PICKABLE_WRITE, ENABLE_COLLISION_REPORTING, ENABLE_PICK_REPORTING

Fields inherited from interface ij3d.ContentConstants
BB, BS, CO, CS, CUSTOM, MULTIORTHO, ORTHO, PL, SURFACE, SURFACE_PLOT2D, VOLUME

Constructor Summary

Constructors
Constructor and Description

ContentInstant(String name)

Constructors
Constructor and Description
`ContentInstant(String name)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods Deprecated Methods
Modifier and Type	Method and Description
`void`	`addPointListPoint(Point3d p)` Deprecated.
`void`	`applySurfaceColors(ij.ImagePlus imp)`
`void`	`applyTransform(double[] matrix)`
`void`	`applyTransform(Transform3D transform)`
`void`	`canvasResized()`
`void`	`clearDisplayedData()`
`void`	`clearOriginalData()`
`void`	`contentAdded(Content c)`
`void`	`contentChanged(Content c)`
`void`	`contentRemoved(Content c)`
`void`	`contentSelected(Content c)`
`void`	`deletePointListPoint(int i)` Deprecated.
`void`	`display(ContentNode node)`
`void`	`displayAs(int type)`
`ij.ImagePlus`	`exportTransformed()`
`void`	`eyePtChanged(View view)`
`void`	`getAlphaLUT(int[] l)`
`void`	`getBlueLUT(int[] l)`
`boolean[]`	`getChannels()`
`Color3f`	`getColor()`
`ContentNode`	`getContent()`
`static int`	`getDefaultResamplingFactor(ij.ImagePlus imp, int type)`
`static int`	`getDefaultThreshold(ij.ImagePlus imp, int type)`
`void`	`getGreenLUT(int[] l)`
`ij.ImagePlus`	`getImage()`
`Color3f`	`getLandmarkColor()`
`float`	`getLandmarkPointSize()`
`TransformGroup`	`getLocalRotate()`
`void`	`getLocalRotate(Transform3D t)`
`TransformGroup`	`getLocalTranslate()`
`void`	`getLocalTranslate(Transform3D t)`
`String`	`getName()`
`PointList`	`getPointList()`
`void`	`getRedLUT(int[] l)`
`int`	`getResamplingFactor()`
`int`	`getThreshold()`
`int`	`getTimepoint()`
`float`	`getTransparency()`
`int`	`getType()`
`boolean`	`hasBoundingBox()`
`boolean`	`hasCoord()`
`boolean`	`isAvailable()`
`boolean`	`isLocked()`
`boolean`	`isPLVisible()`
`boolean`	`isSaturatedVolumeRendering()`
`boolean`	`isShaded()`
`boolean`	`isVisible()`
`void`	`loadPointList()`
`void`	`restoreDisplayedData()`
`void`	`savePointList()`
`void`	`savePointList(PrintStream out)`
`void`	`setChannels(boolean[] channels)`
`void`	`setColor(Color3f color)`
`void`	`setLandmarkColor(Color3f color)`
`void`	`setLandmarkPointSize(float r)`
`void`	`setListPointPos(int i, Point3d pos)` Deprecated.
`void`	`setLocked(boolean b)`
`void`	`setLUT(int[] rLUT, int[] gLUT, int[] bLUT, int[] aLUT)`
`void`	`setPointList(PointList points)`
`void`	`setPointListDialog(PointListDialog p)`
`void`	`setSaturatedVolumeRendering(boolean b)`
`void`	`setSelected(boolean selected)`
`void`	`setShaded(boolean b)`
`void`	`setThreshold(int th)`
`void`	`setTransform(double[] matrix)`
`void`	`setTransform(Transform3D transform)`
`void`	`setTransparency(float transparency)`
`void`	`setVisible(boolean b)`
`void`	`showBoundingBox(boolean b)`
`void`	`showCoordinateSystem(boolean b)`
`void`	`showPointList(boolean b)`
`void`	`swapDisplayedData()`
`void`	`toggleLock()`
`void`	`transformationFinished(View view)`
`void`	`transformationStarted(View view)`
`void`	`transformationUpdated(View view)`
`void`	`universeClosed()`

Methods inherited from class org.scijava.java3d.BranchGroup
cloneNode, compile, detach, pickAll, pickAll, pickAllSorted, pickAllSorted, pickAny, pickAny, pickClosest, pickClosest

Methods inherited from class org.scijava.java3d.Group
addChild, getAllChildren, getAlternateCollisionTarget, getChild, getCollisionBounds, indexOfChild, insertChild, moveTo, numChildren, removeAllChildren, removeChild, removeChild, setAlternateCollisionTarget, setChild, setCollisionBounds

Methods inherited from class org.scijava.java3d.Node
cloneTree, cloneTree, cloneTree, cloneTree, cloneTree, cloneTree, duplicateNode, getBounds, getBoundsAutoCompute, getCollidable, getLocale, getLocalToVworld, getLocalToVworld, getParent, getPickable, setBounds, setBoundsAutoCompute, setCollidable, setPickable

Methods inherited from class org.scijava.java3d.SceneGraphObject
clearCapability, clearCapabilityIsFrequent, duplicateSceneGraphObject, getCapability, getCapabilityIsFrequent, getUserData, isCompiled, isLive, setCapability, setCapabilityIsFrequent, setName, setUserData, toString, updateNodeReferences

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

color
```
protected Color3f color
```

image
```
protected ij.ImagePlus image
```

channels
```
protected boolean[] channels
```

rLUT
```
protected int[] rLUT
```

gLUT
```
protected int[] gLUT
```

bLUT
```
protected int[] bLUT
```

aLUT
```
protected int[] aLUT
```

transparency
```
protected float transparency
```

resamplingF
```
protected int resamplingF
```

threshold
```
protected int threshold
```

shaded
```
protected boolean shaded
```

type
```
protected int type
```

selected
```
protected boolean selected
```

localRotate
```
protected TransformGroup localRotate
```

localTranslate

protected TransformGroup localTranslate

Constructor Detail
- ContentInstant
```
public ContentInstant(String name)
```

Method Detail

displayAs
```
public void displayAs(int type)
```

getDefaultThreshold

public static int getDefaultThreshold(ij.ImagePlus imp,
                                      int type)

getDefaultResamplingFactor

public static int getDefaultResamplingFactor(ij.ImagePlus imp,
                                             int type)

display

public void display(ContentNode node)

exportTransformed

public ij.ImagePlus exportTransformed()

clearOriginalData
```
public void clearOriginalData()
```

swapDisplayedData
```
public void swapDisplayedData()
```

restoreDisplayedData
```
public void restoreDisplayedData()
```

clearDisplayedData
```
public void clearDisplayedData()
```

isAvailable
```
public boolean isAvailable()
```

setVisible
```
public void setVisible(boolean b)
```

showBoundingBox

public void showBoundingBox(boolean b)

showCoordinateSystem

public void showCoordinateSystem(boolean b)

setSelected

public void setSelected(boolean selected)

setPointListDialog

public void setPointListDialog(PointListDialog p)

showPointList
```
public void showPointList(boolean b)
```

loadPointList
```
public void loadPointList()
```

setPointList

public void setPointList(PointList points)

savePointList
```
public void savePointList()
```

savePointList

public void savePointList(PrintStream out)
                   throws IOException

Throws:: IOException

addPointListPoint

@Deprecated
public void addPointListPoint(Point3d p)

Deprecated.

Parameters:: p -

setListPointPos

@Deprecated
public void setListPointPos(int i,
                                        Point3d pos)

Deprecated.

Parameters:: i -; pos -

getLandmarkPointSize
```
public float getLandmarkPointSize()
```

setLandmarkPointSize

public void setLandmarkPointSize(float r)

getLandmarkColor
```
public Color3f getLandmarkColor()
```

setLandmarkColor

public void setLandmarkColor(Color3f color)

getPointList
```
public PointList getPointList()
```

deletePointListPoint

@Deprecated
public void deletePointListPoint(int i)

Deprecated.

Parameters:: i -

toggleLock
```
public void toggleLock()
```

setLocked
```
public void setLocked(boolean b)
```

applyTransform

public void applyTransform(double[] matrix)

applyTransform

public void applyTransform(Transform3D transform)

setTransform

public void setTransform(double[] matrix)

setTransform

public void setTransform(Transform3D transform)

setLUT

public void setLUT(int[] rLUT,
                   int[] gLUT,
                   int[] bLUT,
                   int[] aLUT)

setChannels

public void setChannels(boolean[] channels)

setThreshold
```
public void setThreshold(int th)
```

setShaded
```
public void setShaded(boolean b)
```

isShaded
```
public boolean isShaded()
```

setSaturatedVolumeRendering

public void setSaturatedVolumeRendering(boolean b)

isSaturatedVolumeRendering

public boolean isSaturatedVolumeRendering()

applySurfaceColors

public void applySurfaceColors(ij.ImagePlus imp)

setColor
```
public void setColor(Color3f color)
```

setTransparency

public void setTransparency(float transparency)

transformationStarted
```
public void transformationStarted(View view)
```
Specified by:

transformationStarted in interface UniverseListener

contentAdded
```
public void contentAdded(Content c)
```
Specified by:

contentAdded in interface UniverseListener

contentRemoved
```
public void contentRemoved(Content c)
```
Specified by:

contentRemoved in interface UniverseListener

canvasResized
```
public void canvasResized()
```
Specified by:

canvasResized in interface UniverseListener

contentSelected
```
public void contentSelected(Content c)
```
Specified by:

contentSelected in interface UniverseListener

contentChanged
```
public void contentChanged(Content c)
```
Specified by:

contentChanged in interface UniverseListener

universeClosed
```
public void universeClosed()
```
Specified by:

universeClosed in interface UniverseListener

transformationUpdated
```
public void transformationUpdated(View view)
```
Specified by:

transformationUpdated in interface UniverseListener

transformationFinished
```
public void transformationFinished(View view)
```
Specified by:

transformationFinished in interface UniverseListener

eyePtChanged
```
public void eyePtChanged(View view)
```

getName
```
public String getName()
```
Overrides:

getName in class SceneGraphObject

getTimepoint
```
public int getTimepoint()
```

getType
```
public int getType()
```

getContent
```
public ContentNode getContent()
```

getImage
```
public ij.ImagePlus getImage()
```

getChannels
```
public boolean[] getChannels()
```

getRedLUT
```
public void getRedLUT(int[] l)
```

getGreenLUT
```
public void getGreenLUT(int[] l)
```

getBlueLUT
```
public void getBlueLUT(int[] l)
```

getAlphaLUT
```
public void getAlphaLUT(int[] l)
```

getColor
```
public Color3f getColor()
```

getThreshold
```
public int getThreshold()
```

getTransparency
```
public float getTransparency()
```

getResamplingFactor
```
public int getResamplingFactor()
```

getLocalRotate

public TransformGroup getLocalRotate()

getLocalTranslate

public TransformGroup getLocalTranslate()

getLocalRotate

public void getLocalRotate(Transform3D t)

getLocalTranslate

public void getLocalTranslate(Transform3D t)

isLocked
```
public boolean isLocked()
```

isVisible
```
public boolean isVisible()
```

hasCoord
```
public boolean hasCoord()
```

hasBoundingBox
```
public boolean hasBoundingBox()
```

isPLVisible
```
public boolean isPLVisible()
```

Class ContentInstant

Field Summary

Fields inherited from class org.scijava.java3d.BranchGroup

Fields inherited from class org.scijava.java3d.Group

Fields inherited from class org.scijava.java3d.Node

Fields inherited from interface ij3d.ContentConstants

Constructor Summary

Method Summary

Methods inherited from class org.scijava.java3d.BranchGroup

Methods inherited from class org.scijava.java3d.Group

Methods inherited from class org.scijava.java3d.Node

Methods inherited from class org.scijava.java3d.SceneGraphObject

Methods inherited from class java.lang.Object

Field Detail

color

image

channels

rLUT

gLUT

bLUT

aLUT

transparency

resamplingF

threshold

shaded

type

selected

localRotate

localTranslate

Constructor Detail

ContentInstant

Method Detail

displayAs

getDefaultThreshold

getDefaultResamplingFactor

display

exportTransformed

clearOriginalData

swapDisplayedData

restoreDisplayedData

clearDisplayedData

isAvailable

setVisible

showBoundingBox

showCoordinateSystem

setSelected

setPointListDialog

showPointList

loadPointList

setPointList

savePointList

savePointList

addPointListPoint

setListPointPos

getLandmarkPointSize

setLandmarkPointSize

getLandmarkColor

setLandmarkColor

getPointList

deletePointListPoint

toggleLock

setLocked

applyTransform

applyTransform

setTransform

setTransform

setLUT

setChannels

setThreshold

setShaded

isShaded

setSaturatedVolumeRendering

isSaturatedVolumeRendering

applySurfaceColors

setColor

setTransparency

transformationStarted

contentAdded

contentRemoved

canvasResized