Constructor Detail

• LegacyDHMImgLoader

  public LegacyDHMImgLoader(File directory,
                            String stackDir,
                            String amplitudeDir,
                            String phaseDir,
                            List<String> timepoints,
                            List<String> zPlanes,
                            String extension,
                            int ampChannelId,
                            int phaseChannelId,
                            AbstractSequenceDescription<? extends BasicViewSetup,? extends BasicViewDescription<?>,?> sd)

Method Detail

• getStackDir

  public String getStackDir()

• getAmplitudeDir

  public String getAmplitudeDir()

• getPhaseDir

  public String getPhaseDir()

• getZPlanes

  public List<String> getZPlanes()

• getTimepoints

  public List<String> getTimepoints()

• getAmpChannelId

  public int getAmpChannelId()

• getPhaseChannelId

  public int getPhaseChannelId()

• getExt

  public String getExt()

• getFloatImage

  public RandomAccessibleInterval<FloatType> getFloatImage(ViewId view,
                                                           boolean normalize)

  Description copied from interface: LegacyImgLoader
  Get FloatType image. If requested, the image is normalized to the range [0,1].

  Parameters:

  view - timepoint and setup for which to retrieve the image.

  normalize - whether the image should be normalized to [0,1].

  Returns:

  FloatType image

• getImage

  public RandomAccessibleInterval<UnsignedShortType> getImage(ViewId view)

  Description copied from interface: LegacyBasicImgLoader
  Get the un-normalized image of the default pixel type of this BasicImgLoader.

  Parameters:

  view - timepoint and setup for which to retrieve the image.

  Returns:

  image of type T.

• loadMetaData

  protected void loadMetaData(ViewId view)

  Description copied from class: AbstractImgLoader
  Loads only the metadata from the image, should call updateMetaDataCache( ... )

  Specified by:

  loadMetaData in class AbstractImgLoader

• populateImage

  public static final <T extends RealType<T> & NativeType<T>> void populateImage(ArrayImg<T,?> img,
                                                                                 File directory,
                                                                                 String stackDir,
                                                                                 String ampOrPhaseDirectory,
                                                                                 List<String> zPlanes,
                                                                                 String timepoint,
                                                                                 String extension)