AreaList (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- ini.trakem2.persistence.DBObject
- - ini.trakem2.display.Displayable
  - - ini.trakem2.display.ZDisplayable
    - - ini.trakem2.display.AreaList

All Implemented Interfaces:

AreaContainer, Paintable, VectorData
```
public class AreaList
extends ZDisplayable
implements AreaContainer, VectorData
```
A list of brush painted areas similar to a set of labelfields in Amira. For each layer where painting has been done, there is an entry in the ht_areas HashMap that contains the layer's id as a Long, and a java.awt.geom.Area object. All Area objects are local to this AreaList's AffineTransform.

Nested Class Summary
- Nested classes/interfaces inherited from class ini.trakem2.display.Displayable
  Displayable.DataPackage, Displayable.DoEdit, Displayable.DoEdits, Displayable.DoTransforms, Displayable.SliderListener

Field Summary
- Fields inherited from class ini.trakem2.display.ZDisplayable
  layer_set
- Fields inherited from class ini.trakem2.display.Displayable
  alpha, annotation, at, color, COMPOSITE_ADD, COMPOSITE_COLOR_YCBCR, COMPOSITE_DIFFERENCE, COMPOSITE_MULTIPLY, COMPOSITE_NORMAL, COMPOSITE_SUBTRACT, compositeModes, height, hs_linked, last_color, layer, linked_props, linked_props_origins, locked, props, TAG_ATTR1, TAG_ATTR2, title, visible, width
- Fields inherited from class ini.trakem2.persistence.DBObject
  id, project

Constructor Summary

Constructors
Constructor and Description
`AreaList(Project project, long id, HashMap<String,String> ht_attributes, HashMap<Displayable,String> ht_links)` Reconstruct from XML.
`AreaList(Project project, long id, String title, float width, float height, float alpha, boolean visible, Color color, boolean locked, ArrayList<Long> al_ul, AffineTransform at)` Reconstruct from the database.
`AreaList(Project project, String title, double x, double y)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`add(long layer_id, ShapeRoi roi)` Adds the given ROI, which is expected in world/LayerSet coordinates, to the area present at Layer with id layer_id, or set it if none present yet.
`void`	`addArea(long layer_id, Area area)` Add a copy of an Area object to the existing, if any, area object at Layer with layer_id as given, or if not existing, just set the copy as it.
`void`	`adjustProperties()` Shows a dialog to adjust properties of this object.
`boolean`	`apply(Layer la, Area roi, CoordinateTransform ct)` Applies the 2D transform @ict (which is expected to operate on the world coordinates version of the data contained here) only to the data that falls within the @param roi (in world coords), and then recomputes the bounding box and affine transform (to a translation or identity).
`boolean`	`apply(VectorDataTransform vdt)`
`boolean`	`calculateBoundingBox(Layer la)` Calculate box, make this width,height be that of the box, and translate all areas to fit in.
`Displayable`	`clone(Project pr, boolean copy_id)` Performs a deep copy of this object, without the links.
`boolean`	`contains(Layer layer, double x, double y)` Returns whether the point x,y is contained in this object at the given Layer.
`boolean`	`crop(List<Layer> range)` Retain the data within the layer range, and through out all the rest.
`static void`	`exportAsLabels(List<Displayable> listToPaint, Roi roi, float scale, int first_layer, int last_layer, boolean visible_only, boolean to_file, boolean as_amira_labels)` Export all given AreaLists as one per pixel value, what is called a "labels" file; a file dialog is offered to save the image as a tiff stack.
`static void`	`exportDTD(StringBuilder sb_header, HashSet<String> hs, String indent)`
`void`	`exportXML(StringBuilder sb_body, String indent, XMLOptions options)` The oid is this objects' id, whereas the 'id' tag will be the id of the wrapper Thing object.
`void`	`fillHoles(Layer la)`
`List<Point3f>`	`generateTriangles(double scale, int resample)`
`HashMap<Long,ArrayList<ArrayList<Point>>>`	`getAllPaths()` Returns a table of Long layer ids versus the ArrayList that getPaths(long) returns for it.
`Area`	`getArea(Layer la)`
`Area`	`getArea(long layer_id)`
`Area`	`getAreaAt(Layer layer)` In world coordinates, a copy of the area at `layer`.
`List<Area>`	`getAreas(Layer layer, Rectangle box)`
`Rectangle`	`getBounds(Rectangle r, Layer layer)` Returns the bounds of this object as it shows in the given layer.
`Layer`	`getFirstLayer()` Returns the layer of lowest Z coordinate Layer where this ZDisplayable has a point in.
`String`	`getInfo()` Measure the volume (in voxels) of this AreaList, and the surface area, the latter estimated as the number of voxels that make the outline.
`Layer`	`getLastLayer()` Returns the layer of highest Z coordinate Layer where this ZDisplayable has a point in.
`Collection<Long>`	`getLayerIds()` Get the list of Layer ids on which this ZDisplayable has data on.
`List<Layer>`	`getLayerRange()` Get the range of layers between the first and last layers in which this AreaList paints to.
`int`	`getNAreas()` How many layers does this object paint to.
`ArrayList<ArrayList<Point>>`	`getPaths(long layer_id)` Returns an ArrayList of ArrayList of Point as value with all paths for the Area of the given layer_id.
`ij.ImagePlus`	`getStack(int type, double scale)` Returns a stack of images representing the pixel data of this LayerSet inside this AreaList.
`boolean`	`interpolate(Layer first, Layer last, boolean always_use_distance_map)` Interpolate areas between the given first and last layers, both of which must contain an area.
`boolean`	`intersects(Area area, double z_first, double z_last)`
`boolean`	`intersects(Layer layer, Area area)` Calls intersects(area) unless overriden -- intended for ZDisplayable objects to return whether they intersect the given area at the given layer.
`boolean`	`intersects(Layer layer, Rectangle r)`
`boolean`	`isDeletable()`
`boolean`	`isFillPaint()`
`boolean`	`isRoughlyInside(Layer layer, Rectangle box)` If this Displayable intersects with @param r or almost intersects, then returns true.
`void`	`keyPressed(KeyEvent ke)`
`protected boolean`	`layerRemoved(Layer la)` Update internal datastructures to reflect the fact that @param layer has been removed from the containing LayerSet.
`boolean`	`linkPatches()` Link the Patch objects that lay underneath the part of the bounding box of this profile that shows in the current layer, so that they cannot be dragged independently.
`double[]`	`measure()` Returns a double array with 0=volume, 1=lower_bound_surface, 2=upper_bound_surface_smoothed, 3=upper_bound_surface, 4=max_diameter, 5=all_tops_and_bottoms All measures are approximate.
`ij.measure.ResultsTable`	`measure(ij.measure.ResultsTable rt)` Does nothing unless overriden.
`ij.measure.ResultsTable`	`measureAreas(ij.measure.ResultsTable rt)`
`static AreaList`	`merge(ArrayList<Displayable> al)` Merge all arealists contained in the ArrayList to the first one found, and remove the others from the project, and only if they belong to the same LayerSet.
`void`	`mouseDragged(MouseEvent me, Layer la, int x_p, int y_p, int x_d, int y_d, int x_d_old, int y_d_old)`
`void`	`mousePressed(MouseEvent me, Layer la, int x_p_w, int y_p_w, double mag)`
`void`	`mouseReleased(MouseEvent me, Layer la, int x_p, int y_p, int x_d, int y_d, int x_r, int y_r)`
`void`	`paint(Graphics2D g, Rectangle srcRect, double magnification, boolean active, int channels, Layer active_layer, List<Layer> layers)`
`boolean`	`paintsAt(Layer layer)` Check if this instance will paint anything at the level of the given Layer.
`AreaList`	`part(long layer_id, ShapeRoi sroi)` Subtracts the given ROI, and then creates a new AreaList with identical properties and the content of the subtracted part.
`void`	`setArea(long layer_id, Area area)` Directly place an Area for the specified layer.
`static ArrayList<AreaList>`	`split(List<Displayable> al)` For each AreaList in the list, find disconnected volumes within each and make an AreaList out of each.
`void`	`subtract(long layer_id, ShapeRoi roi)` Subtracts the given ROI, which is expected in world/LayerSet coordinates, to the area present at Layer with id layer_id, or set it if none present yet.
`void`	`transformPoints(Layer layer, double dx, double dy, double rot, double xo, double yo)` Transform points falling within the given layer; translate by dx,dy and rotate by rot relative to origin xo,yo

Methods inherited from class ini.trakem2.display.ZDisplayable
exportDTD, getBucketable, getLayerSet, remove, remove2, setColor, setLayer, setLayerSet, setLayerSet, setVisible, softRemove, updateBucket, updateBucket

Methods inherited from class ini.trakem2.display.Displayable
areThereLayerCrossLinks, canSendTo, clone, clone, commonDTDChildren, contains, deselect, destroy, displacePoints, exportSVG, findById, findNearestPoint, findNearestPoint, getAffineTransform, getAffineTransformCopy, getAlpha, getAnnotation, getArea, getAreaForBucket, getBoundingBox, getBoundingBox, getBoundingBox, getBounds, getColor, getComposite, getComposite, getCompositeMode, getHeight, getIntersection, getLayer, getLayersWithData, getLinked, getLinked, getLinkedBox, getLinkedGroup, getLinkedProperties, getLinkedProperties, getLinkedProperty, getLinkedProperty, getMinimalBoundingBox, getNameId, getPerimeter, getPerimeter, getProperties, getProperty, getProperty, getShortTitle, getTitle, getWidth, getX, getXMLSafeValue, getXMLSafeValue, getY, hasLinkedGroupWithinLayer, hasProperties, intersects, intersects, inverseTransformPoint, isLinked, isLinked, isLinked, isLocked, isLocked2, isOnlyLinkedTo, isOnlyLinkedTo, isOutOfRepaintingClip, isOutOfRepaintingClip, isVisible, link, link, makeAdjustPropertiesDialog, mouseWheelMoved, paintAsBox, paintOffscreen, paintSnapshot, preConcatenate, prePaint, preTransform, processAdjustPropertiesDialog, removeLinkedProperties, removeLinkedPropertiesFromOrigins, repaint, restXML, rotate, rotate, rotatePoints, scale, scale, scalePoints, setAffineTransform, setAlpha, setAlpha, setAnnotation, setCompositeMode, setDimensions, setDimensions, setLayer, setLinkedProperties, setLinkedProperty, setLocation, setLocked, setProperty, setTitle, setVisible, snapTo, toString, transform, transformPoint, transformPoint, transformPoints, transformPoints, transformPoints, transformPoints, transformPoints, transformPoints, transformPoints, transformPoints, transformPoints, transformRectangle, translate, translate, unlink, unlink, unlinkAll, updateInDatabase, xmlError, xmlError

Methods inherited from class ini.trakem2.persistence.DBObject
addToDatabase, getId, getProject, getUniqueIdentifier, removeFromDatabase, updateInDatabase

Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - AreaList
```
public AreaList(Project project,
                String title,
                double x,
                double y)
```
  - AreaList
```
public AreaList(Project project,
                long id,
                HashMap<String,String> ht_attributes,
                HashMap<Displayable,String> ht_links)
```
    Reconstruct from XML.
  - AreaList
```
public AreaList(Project project,
                long id,
                String title,
                float width,
                float height,
                float alpha,
                boolean visible,
                Color color,
                boolean locked,
                ArrayList<Long> al_ul,
                AffineTransform at)
```
    Reconstruct from the database.
- Method Detail
  - paint
```
public void paint(Graphics2D g,
                  Rectangle srcRect,
                  double magnification,
                  boolean active,
                  int channels,
                  Layer active_layer,
                  List<Layer> layers)
```
    Specified by:
    
    paint in interface Paintable
    
    Overrides:
    
    paint in class Displayable
  - transformPoints
```
public void transformPoints(Layer layer,
                            double dx,
                            double dy,
                            double rot,
                            double xo,
                            double yo)
```
    Description copied from class: ZDisplayable
    
    Transform points falling within the given layer; translate by dx,dy and rotate by rot relative to origin xo,yo
    
    Overrides:
    
    transformPoints in class ZDisplayable
  - getFirstLayer
```
public Layer getFirstLayer()
```
    Returns the layer of lowest Z coordinate Layer where this ZDisplayable has a point in.
    
    Specified by:
    
    getFirstLayer in class ZDisplayable
  - getLastLayer
```
public Layer getLastLayer()
```
    Returns the layer of highest Z coordinate Layer where this ZDisplayable has a point in.
  - getLayerRange
```
public List<Layer> getLayerRange()
```
    Get the range of layers between the first and last layers in which this AreaList paints to.
  - linkPatches
```
public boolean linkPatches()
```
    Description copied from class: ZDisplayable
    
    Link the Patch objects that lay underneath the part of the bounding box of this profile that shows in the current layer, so that they cannot be dragged independently.
    
    Specified by:
    
    linkPatches in class ZDisplayable
    
    Returns:
    
    whether the locking state changed.
  - contains
```
public boolean contains(Layer layer,
                        double x,
                        double y)
```
    Returns whether the point x,y is contained in this object at the given Layer.
    
    Overrides:
    
    contains in class Displayable
  - intersects
```
public boolean intersects(Layer layer,
                          Rectangle r)
```
    Overrides:
    
    intersects in class Displayable
  - intersects
```
public boolean intersects(Layer layer,
                          Area area)
```
    Description copied from class: Displayable
    
    Calls intersects(area) unless overriden -- intended for ZDisplayable objects to return whether they intersect the given area at the given layer.
    
    Overrides:
    
    intersects in class Displayable
  - getBounds
```
public Rectangle getBounds(Rectangle r,
                           Layer layer)
```
    Returns the bounds of this object as it shows in the given layer.
    
    Overrides:
    
    getBounds in class Displayable
  - isDeletable
```
public boolean isDeletable()
```
    Specified by:
    
    isDeletable in class Displayable
  - mousePressed
```
public void mousePressed(MouseEvent me,
                         Layer la,
                         int x_p_w,
                         int y_p_w,
                         double mag)
```
    Overrides:
    
    mousePressed in class Displayable
  - mouseDragged
```
public void mouseDragged(MouseEvent me,
                         Layer la,
                         int x_p,
                         int y_p,
                         int x_d,
                         int y_d,
                         int x_d_old,
                         int y_d_old)
```
    Overrides:
    
    mouseDragged in class Displayable
  - mouseReleased
```
public void mouseReleased(MouseEvent me,
                          Layer la,
                          int x_p,
                          int y_p,
                          int x_d,
                          int y_d,
                          int x_r,
                          int y_r)
```
    Overrides:
    
    mouseReleased in class Displayable
  - calculateBoundingBox
```
public boolean calculateBoundingBox(Layer la)
```
    Calculate box, make this width,height be that of the box, and translate all areas to fit in.
    
    Specified by:
    
    calculateBoundingBox in interface AreaContainer
    
    Specified by:
    
    calculateBoundingBox in class ZDisplayable
    
    Parameters:
    
    la - is the currently active Layer.
    
    Returns:
    
    Whether this Displayable's bounding box was modified.
  - exportDTD
```
public static void exportDTD(StringBuilder sb_header,
                             HashSet<String> hs,
                             String indent)
```
  - exportXML
```
public void exportXML(StringBuilder sb_body,
                      String indent,
                      XMLOptions options)
```
    Description copied from class: Displayable
    
    The oid is this objects' id, whereas the 'id' tag will be the id of the wrapper Thing object.
    
    Overrides:
    
    exportXML in class ZDisplayable
  - getPaths
```
public ArrayList<ArrayList<Point>> getPaths(long layer_id)
```
    Returns an ArrayList of ArrayList of Point as value with all paths for the Area of the given layer_id.
  - getAllPaths
```
public HashMap<Long,ArrayList<ArrayList<Point>>> getAllPaths()
```
    Returns a table of Long layer ids versus the ArrayList that getPaths(long) returns for it.
  - fillHoles
```
public void fillHoles(Layer la)
```
  - paintsAt
```
public boolean paintsAt(Layer layer)
```
    Description copied from class: ZDisplayable
    
    Check if this instance will paint anything at the level of the given Layer.
    
    Overrides:
    
    paintsAt in class ZDisplayable
  - adjustProperties
```
public void adjustProperties()
```
    Description copied from class: Displayable
    
    Shows a dialog to adjust properties of this object.
    
    Overrides:
    
    adjustProperties in class Displayable
  - isFillPaint
```
public boolean isFillPaint()
```
  - merge
```
public static AreaList merge(ArrayList<Displayable> al)
```
    Merge all arealists contained in the ArrayList to the first one found, and remove the others from the project, and only if they belong to the same LayerSet. Returns the merged AreaList object.
  - split
```
public static ArrayList<AreaList> split(List<Displayable> al)
                                 throws Exception
```
    For each AreaList in the list, find disconnected volumes within each and make an AreaList out of each. If so, remove the original AreaList, and place the new ones under the same ProjectThing parent, with the same name
    
    Parameters:
    
    al - The list of AreaList to split.
    
    Returns:
    
    The list of AreaList that remain after potentially splitting the given ones.
    
    Throws:
    
    Exception
  - getNAreas
```
public int getNAreas()
```
    How many layers does this object paint to.
  - getArea
```
public Area getArea(Layer la)
```
  - getArea
```
public Area getArea(long layer_id)
```
  - clone
```
public Displayable clone(Project pr,
                         boolean copy_id)
```
    Performs a deep copy of this object, without the links.
    
    Specified by:
    
    clone in class Displayable
  - generateTriangles
```
public List<Point3f> generateTriangles(double scale,
                                       int resample)
```
  - setArea
```
public void setArea(long layer_id,
                    Area area)
```
    Directly place an Area for the specified layer. Keep in mind it will be added in this AreaList coordinate space, not the overall LayerSet coordinate space. Does not make it local, you should call calculateBoundingBox() after setting an area.
  - addArea
```
public void addArea(long layer_id,
                    Area area)
```
    Add a copy of an Area object to the existing, if any, area object at Layer with layer_id as given, or if not existing, just set the copy as it. The area is expected in this AreaList coordinate space. Does not make it local, you should call calculateBoundingBox when done.
  - add
```
public void add(long layer_id,
                ShapeRoi roi)
         throws NoninvertibleTransformException
```
    Adds the given ROI, which is expected in world/LayerSet coordinates, to the area present at Layer with id layer_id, or set it if none present yet.
    
    Throws:
    
    NoninvertibleTransformException
  - subtract
```
public void subtract(long layer_id,
                     ShapeRoi roi)
              throws NoninvertibleTransformException
```
    Subtracts the given ROI, which is expected in world/LayerSet coordinates, to the area present at Layer with id layer_id, or set it if none present yet.
    
    Throws:
    
    NoninvertibleTransformException
  - part
```
public AreaList part(long layer_id,
                     ShapeRoi sroi)
              throws NoninvertibleTransformException
```
    Subtracts the given ROI, and then creates a new AreaList with identical properties and the content of the subtracted part. Returns null if there is no intersection between sroi and the Area for layer_id.
    
    Throws:
    
    NoninvertibleTransformException
  - keyPressed
```
public void keyPressed(KeyEvent ke)
```
    Overrides:
    
    keyPressed in class Displayable
  - getInfo
```
public String getInfo()
```
    Measure the volume (in voxels) of this AreaList, and the surface area, the latter estimated as the number of voxels that make the outline. If the width and height of this AreaList cannot be fit in memory, scaled down versions will be used, and thus the results will be approximate.
    
    Overrides:
    
    getInfo in class DBObject
  - intersects
```
public boolean intersects(Area area,
                          double z_first,
                          double z_last)
```
    Specified by:
    
    intersects in class ZDisplayable
    
    Parameters:
    
    area - is expected in world coordinates.
  - exportAsLabels
```
public static void exportAsLabels(List<Displayable> listToPaint,
                                  Roi roi,
                                  float scale,
                                  int first_layer,
                                  int last_layer,
                                  boolean visible_only,
                                  boolean to_file,
                                  boolean as_amira_labels)
```
    Export all given AreaLists as one per pixel value, what is called a "labels" file; a file dialog is offered to save the image as a tiff stack.
  - measure
```
public ij.measure.ResultsTable measure(ij.measure.ResultsTable rt)
```
    Description copied from class: Displayable
    
    Does nothing unless overriden.
    
    Overrides:
    
    measure in class Displayable
  - measure
```
public double[] measure()
```
    Returns a double array with 0=volume, 1=lower_bound_surface, 2=upper_bound_surface_smoothed, 3=upper_bound_surface, 4=max_diameter, 5=all_tops_and_bottoms All measures are approximate. [0] Volume: sum(area * thickness) for all sections [1] Lower Bound Surface: measure area per section, compute radius of circumference of identical area, compute then area of the sides of the truncated cone of height thickness, for each section. Plus top and bottom areas when visiting sections without a painted area. [2] Upper Bound Surface Smoothed: measure smoothed perimeter lengths per section, multiply by thickness to get lateral area. Plus tops and bottoms. [3] Upper Bound Surface: measure raw pixelated perimeter lengths per section, multiply by thickness to get lateral area. Plus top and bottoms. [4] Maximum diameter: longest distance between any two points in the contours of all painted areas. [5] All tops and bottoms: Sum of all included surface areas that are not part of side area. [6] X coordinate of the center of mass. [7] Y coordinate of the center of mass. [8] Z coordinate of the center of mass.
  - crop
```
public boolean crop(List<Layer> range)
```
    Retain the data within the layer range, and through out all the rest.
    
    Overrides:
    
    crop in class ZDisplayable
  - getStack
```
public ij.ImagePlus getStack(int type,
                             double scale)
```
    Returns a stack of images representing the pixel data of this LayerSet inside this AreaList.
  - getAreas
```
public List<Area> getAreas(Layer layer,
                           Rectangle box)
```
    Specified by:
    
    getAreas in interface AreaContainer
  - layerRemoved
```
protected boolean layerRemoved(Layer la)
```
    Description copied from class: ZDisplayable
    
    Update internal datastructures to reflect the fact that @param layer has been removed from the containing LayerSet.
    
    Overrides:
    
    layerRemoved in class ZDisplayable
  - apply
```
public boolean apply(Layer la,
                     Area roi,
                     CoordinateTransform ct)
              throws Exception
```
    Description copied from interface: VectorData
    
    Applies the 2D transform @ict (which is expected to operate on the world coordinates version of the data contained here) only to the data that falls within the @param roi (in world coords), and then recomputes the bounding box and affine transform (to a translation or identity). Does not consider links.
    
    Specified by:
    
    apply in interface VectorData
    
    Parameters:
    
    la - Only data at this Layer may be transformed.
    
    roi - Only data inside this world-coordinates Area may be transformed.
    
    ct - The transform to apply to the data that is in @param la and within @param roi.
    
    Throws:
    
    Exception
  - apply
```
public boolean apply(VectorDataTransform vdt)
              throws Exception
```
    Specified by:
    
    apply in interface VectorData
    
    Throws:
    
    Exception
  - getLayerIds
```
public Collection<Long> getLayerIds()
```
    Description copied from class: ZDisplayable
    
    Get the list of Layer ids on which this ZDisplayable has data on.
    
    Overrides:
    
    getLayerIds in class ZDisplayable
  - getAreaAt
```
public Area getAreaAt(Layer layer)
```
    In world coordinates, a copy of the area at layer. May be null.
    
    Overrides:
    
    getAreaAt in class Displayable
  - isRoughlyInside
```
public boolean isRoughlyInside(Layer layer,
                               Rectangle box)
```
    Description copied from class: Displayable
    
    If this Displayable intersects with @param r or almost intersects, then returns true. This method is meant to be very fast, and err on the "yes" and never on the "no".
    
    Overrides:
    
    isRoughlyInside in class Displayable
  - measureAreas
```
public ij.measure.ResultsTable measureAreas(ij.measure.ResultsTable rt)
```
    Specified by:
    
    measureAreas in interface AreaContainer
  - interpolate
```
public boolean interpolate(Layer first,
                           Layer last,
                           boolean always_use_distance_map)
                    throws Exception
```
    Interpolate areas between the given first and last layers, both of which must contain an area.
    
    Returns:
    
    false if the interpolation could not be done.
    
    Throws:
    
    Exception

Class AreaList

Nested Class Summary

Nested classes/interfaces inherited from class ini.trakem2.display.Displayable

Field Summary

Fields inherited from class ini.trakem2.display.ZDisplayable

Fields inherited from class ini.trakem2.display.Displayable

Fields inherited from class ini.trakem2.persistence.DBObject

Constructor Summary

Method Summary

Methods inherited from class ini.trakem2.display.ZDisplayable

Methods inherited from class ini.trakem2.display.Displayable

Methods inherited from class ini.trakem2.persistence.DBObject

Methods inherited from class java.lang.Object

Constructor Detail

AreaList

AreaList

AreaList

Method Detail

paint

transformPoints

getFirstLayer

getLastLayer

getLayerRange

linkPatches

contains

intersects

intersects

getBounds

isDeletable

mousePressed

mouseDragged

mouseReleased

calculateBoundingBox

exportDTD

exportXML

getPaths

getAllPaths

fillHoles

paintsAt

adjustProperties

isFillPaint

merge

split

getNAreas

getArea

getArea

clone

generateTriangles

setArea

addArea

add

subtract

part

keyPressed

getInfo

intersects

exportAsLabels

measure

measure

crop

getStack

getAreas

layerRemoved

apply

apply

getLayerIds

getAreaAt

isRoughlyInside

measureAreas

interpolate