WeightedAverageFusion (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- spim.fiji.plugin.fusion.Fusion
- - spim.process.fusion.weightedavg.WeightedAverageFusion

public class WeightedAverageFusion
extends Fusion

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

static class WeightedAverageFusion.WeightedAvgFusionType

Nested Classes
Modifier and Type	Class and Description
`static class`	`WeightedAverageFusion.WeightedAvgFusionType`

Field Summary

Fields
Modifier and Type Field and Description

static int defaultNumParalellViewsIndex

protected int numParalellViews

protected Choice sequentialViews
- Fields inherited from class spim.fiji.plugin.fusion.Fusion
  avgPixels, channelsToProcess, defaultInterpolation, defaultUseBlending, defaultUseContentBased, interpolation, interpolationTypes, newViewsetups, spimData, timepointsToProcess, useBlending, useContentBased, viewIdsToProcess

Fields
Modifier and Type	Field and Description
`static int`	`defaultNumParalellViewsIndex`
`protected int`	`numParalellViews`
`protected Choice`	`sequentialViews`

Constructor Summary

Constructors
Constructor and Description
`WeightedAverageFusion(SpimData2 spimData, List<ViewId> viewIdsToProcess, WeightedAverageFusion.WeightedAvgFusionType type)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`static Map<ViewSetup,ViewSetup>`	`assembleNewViewSetupsFusion(SpimData2 spimData, List<ViewId> viewIdsToProcess, BoundingBoxGUI bb, String newAngleName, String newIlluminationName)` Creates one new Angle and one new Illumination for the fused dataset.
`static Map<ViewSetup,ViewSetup>`	`assembleNewViewSetupsSequential(SpimData2 spimData, List<ViewId> viewIdsToProcess, BoundingBoxGUI bb)` Duplicates all Angles and Illuminations that are processed.
`boolean`	`compressBoundingBoxDialog()` compress the bounding box dialog as much as possible to let more space for extra parameters
`protected Map<ViewSetup,ViewSetup>`	`createNewViewSetups(BoundingBoxGUI bb)` Set up the list of new viewsetups that are created with this fusion.
`boolean`	`fuseData(BoundingBoxGUI bb, ImgExport exporter)` Fuses and saves/displays
`String`	`getDescription()`
`WeightedAverageFusion.WeightedAvgFusionType`	`getFusionType()`
`<T extends RealType<T>> InterpolatorFactory<T,RandomAccessible<T>>`	`getInterpolatorFactory(T type)`
`WeightedAverageFusion`	`newInstance(SpimData2 spimData, List<ViewId> viewIdsToProcess)`
`boolean`	`parseAdditionalParameters(GenericDialog gd)` Parse the additional parameters added before within the bounding box dialog
`void`	`queryAdditionalParameters(GenericDialog gd)` Query additional parameters within the bounding box dialog
`boolean`	`queryParameters()` Query the necessary parameters for the fusion (new dialog has to be made)
`boolean`	`supports16BitUnsigned()`
`boolean`	`supportsDownsampling()`
`long`	`totalRAM(long fusedSizeMB, int bytePerPixel)`

Methods inherited from class spim.fiji.plugin.fusion.Fusion
computeAvgImageSize, computeMaxNumViews, defineNewViewSetups, getInterpolation, getMaxNumViewsPerTimepoint, getNewViewSetups, getTimepointsToProcess, registerAdditionalListeners

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

defaultNumParalellViewsIndex

public static int defaultNumParalellViewsIndex

numParalellViews
```
protected int numParalellViews
```

sequentialViews
```
protected Choice sequentialViews
```

Constructor Detail

WeightedAverageFusion

public WeightedAverageFusion(SpimData2 spimData,
                             List<ViewId> viewIdsToProcess,
                             WeightedAverageFusion.WeightedAvgFusionType type)

Method Detail
- getFusionType
```
public WeightedAverageFusion.WeightedAvgFusionType getFusionType()
```
- getInterpolatorFactory
```
public <T extends RealType<T>> InterpolatorFactory<T,RandomAccessible<T>> getInterpolatorFactory(T type)
```
- fuseData
```
public boolean fuseData(BoundingBoxGUI bb,
                        ImgExport exporter)
```
  Description copied from class: Fusion
  
  Fuses and saves/displays
  
  Specified by:
  
  fuseData in class Fusion
  
  Returns:
- queryParameters
```
public boolean queryParameters()
```
  Description copied from class: Fusion
  
  Query the necessary parameters for the fusion (new dialog has to be made)
  
  Specified by:
  
  queryParameters in class Fusion
  
  Returns:
- newInstance
```
public WeightedAverageFusion newInstance(SpimData2 spimData,
                                         List<ViewId> viewIdsToProcess)
```
  Specified by:
  
  newInstance in class Fusion
  
  Returns:
  
  - a new instance without any special properties
- getDescription
```
public String getDescription()
```
  Specified by:
  
  getDescription in class Fusion
  
  Returns:
  
  - to be displayed in the generic dialog
- supports16BitUnsigned
```
public boolean supports16BitUnsigned()
```
  Specified by:
  
  supports16BitUnsigned in class Fusion
- supportsDownsampling
```
public boolean supportsDownsampling()
```
  Specified by:
  
  supportsDownsampling in class Fusion
- compressBoundingBoxDialog
```
public boolean compressBoundingBoxDialog()
```
  Description copied from class: Fusion
  
  compress the bounding box dialog as much as possible to let more space for extra parameters
  
  Specified by:
  
  compressBoundingBoxDialog in class Fusion
  
  Returns:
- queryAdditionalParameters
```
public void queryAdditionalParameters(GenericDialog gd)
```
  Description copied from class: Fusion
  
  Query additional parameters within the bounding box dialog
  
  Specified by:
  
  queryAdditionalParameters in class Fusion
- parseAdditionalParameters
```
public boolean parseAdditionalParameters(GenericDialog gd)
```
  Description copied from class: Fusion
  
  Parse the additional parameters added before within the bounding box dialog
  
  Specified by:
  
  parseAdditionalParameters in class Fusion
  
  Returns:
- totalRAM
```
public long totalRAM(long fusedSizeMB,
                     int bytePerPixel)
```
  Specified by:
  
  totalRAM in class Fusion
- createNewViewSetups
```
protected Map<ViewSetup,ViewSetup> createNewViewSetups(BoundingBoxGUI bb)
```
  Description copied from class: Fusion
  
  Set up the list of new viewsetups that are created with this fusion. This maybe required if the exporter needs to assemble a new XML dataset or append to the current XML dataset. It maps from an old ViewSetup to a new ViewSetup
  
  Specified by:
  
  createNewViewSetups in class Fusion
  
  Parameters:
  
  bb - - the bounding box used for fusing the data
  
  Returns:
  
  the list of new viewsetups (in the order as the viewsetups are processed)
- assembleNewViewSetupsFusion
```
public static Map<ViewSetup,ViewSetup> assembleNewViewSetupsFusion(SpimData2 spimData,
                                                                   List<ViewId> viewIdsToProcess,
                                                                   BoundingBoxGUI bb,
                                                                   String newAngleName,
                                                                   String newIlluminationName)
```
  Creates one new Angle and one new Illumination for the fused dataset. The size of the List> ViewSetup < is therefore equal to the number of channels
  
  Parameters:
  
  spimData -
  
  viewIdsToProcess -
  
  bb -
  
  newAngleName -
  
  newIlluminationName -
  
  Returns:
- assembleNewViewSetupsSequential
```
public static Map<ViewSetup,ViewSetup> assembleNewViewSetupsSequential(SpimData2 spimData,
                                                                       List<ViewId> viewIdsToProcess,
                                                                       BoundingBoxGUI bb)
```
  Duplicates all Angles and Illuminations that are processed. The size of the List> ViewSetup < is therefore equal to the number of channels * number of processed angles * number of processed illuminations
  
  Parameters:
  
  spimData -
  
  viewIdsToProcess -
  
  bb -
  
  Returns:

Class WeightedAverageFusion

Nested Class Summary

Field Summary

Fields inherited from class spim.fiji.plugin.fusion.Fusion

Constructor Summary

Method Summary

Methods inherited from class spim.fiji.plugin.fusion.Fusion

Methods inherited from class java.lang.Object

Field Detail

defaultNumParalellViewsIndex

numParalellViews

sequentialViews

Constructor Detail

WeightedAverageFusion

Method Detail

getFusionType

getInterpolatorFactory

fuseData

queryParameters

newInstance

getDescription

supports16BitUnsigned

supportsDownsampling

compressBoundingBoxDialog

queryAdditionalParameters

parseAdditionalParameters

totalRAM

createNewViewSetups

assembleNewViewSetupsFusion

assembleNewViewSetupsSequential