DifferenceOfGaussian (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- spim.fiji.plugin.interestpointdetection.InterestPointDetection
- - spim.fiji.plugin.interestpointdetection.DifferenceOf
  - - spim.fiji.plugin.interestpointdetection.DifferenceOfGaussian

All Implemented Interfaces:: GenericDialogAppender

public class DifferenceOfGaussian
extends DifferenceOf
implements GenericDialogAppender

Field Summary

Fields
Modifier and Type	Field and Description
`static String[]`	`computationOnChoice`
`static int`	`defaultComputationChoiceIndex`
`static boolean[]`	`defaultFindMax`
`static boolean[]`	`defaultFindMin`
`static double`	`defaultS`
`static double[]`	`defaultSigma`
`static double`	`defaultT`
`static double[]`	`defaultThreshold`
`static double`	`defaultUseGPUMem`

Fields inherited from class spim.fiji.plugin.interestpointdetection.InterestPointDetection
benchmark

Constructor Summary

Constructors
Constructor and Description

DifferenceOfGaussian(SpimData2 spimData, List<ViewId> viewIdsToProcess)

Constructors
Constructor and Description
`DifferenceOfGaussian(SpimData2 spimData, List<ViewId> viewIdsToProcess)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`protected void`	`addAddtionalParameters(GenericDialog gd)`
`void`	`addQuery(GenericDialog gd)` adds the questions this registration wants to ask
`HashMap<ViewId,List<InterestPoint>>`	`findInterestPoints(TimePoint t)` Perform the interestpoint detection for one timepoint
`String`	`getDescription()`
`String`	`getParameters(int channelId)`
`protected void`	`init(int numChannels)` This is only necessary to make static objects so that the ImageJ dialog remembers choices for the right channel
`DifferenceOfGaussian`	`newInstance(SpimData2 spimData, List<ViewId> viewIdsToProcess)`
`boolean`	`parseDialog(GenericDialog gd)` queries the questions asked before
`protected boolean`	`queryAdditionalParameters(GenericDialog gd)`
`protected boolean`	`setAdvancedValues(Channel channel)`
`protected boolean`	`setDefaultValues(Channel channel, int brightness)`
`protected boolean`	`setInteractiveValues(Channel channel)`

Methods inherited from class spim.fiji.plugin.interestpointdetection.DifferenceOf
correctForDownsampling, downsampleFactor, getViewSelection, limitList, openAndDownsample, preSmooth, queryParameters

Methods inherited from class spim.fiji.plugin.interestpointdetection.InterestPointDetection
getBenchmark, getViewIdsToProcess

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - defaultUseGPUMem
```
public static double defaultUseGPUMem
```
  - defaultS
```
public static double defaultS
```
  - defaultT
```
public static double defaultT
```
  - defaultSigma
```
public static double[] defaultSigma
```
  - defaultThreshold
```
public static double[] defaultThreshold
```
  - defaultFindMin
```
public static boolean[] defaultFindMin
```
  - defaultFindMax
```
public static boolean[] defaultFindMax
```
  - computationOnChoice
```
public static String[] computationOnChoice
```
  - defaultComputationChoiceIndex
```
public static int defaultComputationChoiceIndex
```
- Constructor Detail
  - DifferenceOfGaussian
```
public DifferenceOfGaussian(SpimData2 spimData,
                            List<ViewId> viewIdsToProcess)
```
- Method Detail
  - getDescription
```
public String getDescription()
```
    Specified by:
    
    getDescription in class InterestPointDetection
    
    Returns:
    
    - to be displayed in the generic dialog
  - newInstance
```
public DifferenceOfGaussian newInstance(SpimData2 spimData,
                                        List<ViewId> viewIdsToProcess)
```
    Specified by:
    
    newInstance in class InterestPointDetection
    
    viewIdsToProcess - - which view id's to segment
    
    Returns:
    
    - a new instance without any special properties
  - findInterestPoints
```
public HashMap<ViewId,List<InterestPoint>> findInterestPoints(TimePoint t)
```
    Description copied from class: InterestPointDetection
    
    Perform the interestpoint detection for one timepoint
    
    Specified by:
    
    findInterestPoints in class InterestPointDetection
    
    Returns:
  - setDefaultValues
```
protected boolean setDefaultValues(Channel channel,
                                   int brightness)
```
    Specified by:
    
    setDefaultValues in class DifferenceOf
  - setAdvancedValues
```
protected boolean setAdvancedValues(Channel channel)
```
    Specified by:
    
    setAdvancedValues in class DifferenceOf
  - setInteractiveValues
```
protected boolean setInteractiveValues(Channel channel)
```
    Specified by:
    
    setInteractiveValues in class DifferenceOf
  - init
```
protected void init(int numChannels)
```
    This is only necessary to make static objects so that the ImageJ dialog remembers choices for the right channel
    
    Specified by:
    
    init in class DifferenceOf
    
    Parameters:
    
    numChannels - - the TOTAL number of channels (not only the ones to process)
  - getParameters
```
public String getParameters(int channelId)
```
    Specified by:
    
    getParameters in class InterestPointDetection
    
    Returns:
    
    - stored in the XML so that it is reproducible how the points were segmented
  - addAddtionalParameters
```
protected void addAddtionalParameters(GenericDialog gd)
```
    Specified by:
    
    addAddtionalParameters in class DifferenceOf
  - queryAdditionalParameters
```
protected boolean queryAdditionalParameters(GenericDialog gd)
```
    Specified by:
    
    queryAdditionalParameters in class DifferenceOf
  - addQuery
```
public void addQuery(GenericDialog gd)
```
    Description copied from interface: GenericDialogAppender
    
    adds the questions this registration wants to ask
    
    Specified by:
    
    addQuery in interface GenericDialogAppender
  - parseDialog
```
public boolean parseDialog(GenericDialog gd)
```
    Description copied from interface: GenericDialogAppender
    
    queries the questions asked before
    
    Specified by:
    
    parseDialog in interface GenericDialogAppender
    
    Returns:

Class DifferenceOfGaussian

Field Summary

Fields inherited from class spim.fiji.plugin.interestpointdetection.DifferenceOf

Fields inherited from class spim.fiji.plugin.interestpointdetection.InterestPointDetection

Constructor Summary

Method Summary

Methods inherited from class spim.fiji.plugin.interestpointdetection.DifferenceOf

Methods inherited from class spim.fiji.plugin.interestpointdetection.InterestPointDetection

Methods inherited from class java.lang.Object

Field Detail

defaultUseGPUMem

defaultS

defaultT

defaultSigma

defaultThreshold

defaultFindMin

defaultFindMax

computationOnChoice

defaultComputationChoiceIndex

Constructor Detail

DifferenceOfGaussian

Method Detail

getDescription

newInstance

findInterestPoints

setDefaultValues

setAdvancedValues

setInteractiveValues

init

getParameters

addAddtionalParameters

queryAdditionalParameters

addQuery

parseDialog