public class DifferenceOfGaussian extends DifferenceOf implements GenericDialogAppender
Modifier and Type | Field and Description |
---|---|
static String[] |
computationOnChoice |
static int |
defaultComputationChoiceIndex |
static boolean[] |
defaultFindMax |
static boolean[] |
defaultFindMin |
static double |
defaultS |
static double[] |
defaultSigma |
static double |
defaultT |
static double[] |
defaultThreshold |
static double |
defaultUseGPUMem |
additionalSigmaX, additionalSigmaY, additionalSigmaZ, brightnessChoice, defaultAdditionalSigmaX, defaultAdditionalSigmaY, defaultAdditionalSigmaZ, defaultBrightness, defaultDownsampleXYIndex, defaultDownsampleZIndex, defaultImageSigmaX, defaultImageSigmaY, defaultImageSigmaZ, defaultLocalization, defaultMaxDetections, defaultMaxDetectionsTypeIndex, defaultMaxIntensity, defaultMinIntensity, defaultViewChoice, downsampleChoiceXY, downsampleChoiceZ, downsampleXY, downsampleZ, ds, imageSigmaX, imageSigmaY, imageSigmaZ, limitDetectionChoice, limitDetections, localization, localizationChoice, maxDetections, maxDetectionsTypeIndex, maxIntensity, minIntensity
benchmark
Constructor and Description |
---|
DifferenceOfGaussian(SpimData2 spimData,
List<ViewId> viewIdsToProcess) |
Modifier and Type | Method and Description |
---|---|
protected void |
addAddtionalParameters(GenericDialog gd) |
void |
addQuery(GenericDialog gd)
adds the questions this registration wants to ask
|
HashMap<ViewId,List<InterestPoint>> |
findInterestPoints(TimePoint t)
Perform the interestpoint detection for one timepoint
|
String |
getDescription() |
String |
getParameters(int channelId) |
protected void |
init(int numChannels)
This is only necessary to make static objects so that the ImageJ dialog remembers choices
for the right channel
|
DifferenceOfGaussian |
newInstance(SpimData2 spimData,
List<ViewId> viewIdsToProcess) |
boolean |
parseDialog(GenericDialog gd)
queries the questions asked before
|
protected boolean |
queryAdditionalParameters(GenericDialog gd) |
protected boolean |
setAdvancedValues(Channel channel) |
protected boolean |
setDefaultValues(Channel channel,
int brightness) |
protected boolean |
setInteractiveValues(Channel channel) |
correctForDownsampling, downsampleFactor, getViewSelection, limitList, openAndDownsample, preSmooth, queryParameters
getBenchmark, getViewIdsToProcess
public static double defaultUseGPUMem
public static double defaultS
public static double defaultT
public static double[] defaultSigma
public static double[] defaultThreshold
public static boolean[] defaultFindMin
public static boolean[] defaultFindMax
public static String[] computationOnChoice
public static int defaultComputationChoiceIndex
public String getDescription()
getDescription
in class InterestPointDetection
public DifferenceOfGaussian newInstance(SpimData2 spimData, List<ViewId> viewIdsToProcess)
newInstance
in class InterestPointDetection
viewIdsToProcess
- - which view id's to segmentpublic HashMap<ViewId,List<InterestPoint>> findInterestPoints(TimePoint t)
InterestPointDetection
findInterestPoints
in class InterestPointDetection
protected boolean setDefaultValues(Channel channel, int brightness)
setDefaultValues
in class DifferenceOf
protected boolean setAdvancedValues(Channel channel)
setAdvancedValues
in class DifferenceOf
protected boolean setInteractiveValues(Channel channel)
setInteractiveValues
in class DifferenceOf
protected void init(int numChannels)
init
in class DifferenceOf
numChannels
- - the TOTAL number of channels (not only the ones to process)public String getParameters(int channelId)
getParameters
in class InterestPointDetection
protected void addAddtionalParameters(GenericDialog gd)
addAddtionalParameters
in class DifferenceOf
protected boolean queryAdditionalParameters(GenericDialog gd)
queryAdditionalParameters
in class DifferenceOf
public void addQuery(GenericDialog gd)
GenericDialogAppender
addQuery
in interface GenericDialogAppender
public boolean parseDialog(GenericDialog gd)
GenericDialogAppender
parseDialog
in interface GenericDialogAppender
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