SNTGraph (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- org.jgrapht.graph.AbstractGraph<V,E>
- - org.jgrapht.graph.AbstractBaseGraph<V,E>
  - - sc.fiji.snt.analysis.graph.SNTGraph<V,E>

All Implemented Interfaces:

Serializable, Cloneable, org.jgrapht.Graph<V,E>

Direct Known Subclasses:

AnnotationGraph, DirectedWeightedGraph, SNTPseudograph
```
public abstract class SNTGraph<V,E extends org.jgrapht.graph.DefaultWeightedEdge>
extends org.jgrapht.graph.AbstractBaseGraph<V,E>
```
See Also:

Serialized Form

Field Summary
- Fields inherited from interface org.jgrapht.Graph
  DEFAULT_EDGE_WEIGHT

Constructor Summary

Constructors
Modifier Constructor and Description

protected SNTGraph(Supplier<V> vertexSupplier, Supplier<E> edgeSupplier, org.jgrapht.GraphType type)

Constructors
Modifier	Constructor and Description
`protected`	`SNTGraph(Supplier<V> vertexSupplier, Supplier<E> edgeSupplier, org.jgrapht.GraphType type)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`applyEdges(UnaryOperator<E> operator)` Apply the given operator over the edge set.
`void`	`applyVertices(UnaryOperator<V> operator)` Apply the given operator over the vertex set.
`void`	`filterEdges(Predicate<E> predicate)` Remove edges from this graph that do not match the given predicate.
`void`	`filterVertices(Predicate<V> predicate)` Remove vertices from this graph that do not match the given predicate.
`ColorRGB`	`getEdgeColor(E edge)`
`Map<E,ColorRGB>`	`getEdgeColorRGBMap()`
`ColorRGB`	`getVertexColor(V vertex)`
`Map<V,ColorRGB>`	`getVertexColorRGBMap()`
`double`	`getVertexValue(V vertex)`
`Map<V,Double>`	`getVertexValueMap()`
`void`	`setEdgeColor(E edge, ColorRGB color)`
`void`	`setVertexColor(V vertex, ColorRGB color)`
`void`	`setVertexValue(V vertex, double value)`

Methods inherited from class org.jgrapht.graph.AbstractBaseGraph
addEdge, addEdge, addVertex, addVertex, clone, containsEdge, containsVertex, degreeOf, edgeSet, edgesOf, getAllEdges, getEdge, getEdgeSource, getEdgeSupplier, getEdgeTarget, getEdgeWeight, getType, getVertexSupplier, incomingEdgesOf, inDegreeOf, outDegreeOf, outgoingEdgesOf, removeEdge, removeEdge, removeVertex, setEdgeSupplier, setEdgeWeight, setVertexSupplier, vertexSet

Methods inherited from class org.jgrapht.graph.AbstractGraph
assertVertexExist, containsEdge, equals, hashCode, removeAllEdges, removeAllEdges, removeAllEdges, removeAllVertices, toString, toStringFromSets

Methods inherited from class java.lang.Object
finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.jgrapht.Graph
containsEdge, removeAllEdges, removeAllEdges, removeAllVertices, setEdgeWeight

- Constructor Detail
  - SNTGraph
```
protected SNTGraph(Supplier<V> vertexSupplier,
                   Supplier<E> edgeSupplier,
                   org.jgrapht.GraphType type)
```
- Method Detail
  - setVertexColor
```
public void setVertexColor(V vertex,
                           ColorRGB color)
```
  - setEdgeColor
```
public void setEdgeColor(E edge,
                         ColorRGB color)
```
  - getVertexColor
```
public ColorRGB getVertexColor(V vertex)
```
  - getEdgeColor
```
public ColorRGB getEdgeColor(E edge)
```
  - setVertexValue
```
public void setVertexValue(V vertex,
                           double value)
```
  - getVertexValue
```
public double getVertexValue(V vertex)
```
  - getVertexColorRGBMap
```
public Map<V,ColorRGB> getVertexColorRGBMap()
```
  - getEdgeColorRGBMap
```
public Map<E,ColorRGB> getEdgeColorRGBMap()
```
  - getVertexValueMap
```
public Map<V,Double> getVertexValueMap()
```
  - filterVertices
```
public void filterVertices(Predicate<V> predicate)
```
    Remove vertices from this graph that do not match the given predicate. Edges incident to removed vertices are also removed from the graph.
    
    Parameters:
    
    predicate - a non-interfering, stateless predicate to apply to each vertex to determine if it should be retained in the vertex set.
  - filterEdges
```
public void filterEdges(Predicate<E> predicate)
```
    Remove edges from this graph that do not match the given predicate. Vertices incident to removed edges are _not_ removed from the graph.
    
    Parameters:
    
    predicate - a non-interfering, stateless predicate to apply to each edge to determine if it should be retained in the edge set.
  - applyVertices
```
public void applyVertices(UnaryOperator<V> operator)
```
    Apply the given operator over the vertex set. If a vertex is changed as a result of the function (on the basis of equality, e.g., vIn.equals(vOut)), the input vertex is replaced with the output vertex and all neighboring edges of the input vertex are re-assigned to the output vertex. If the output vertex is null, the input vertex and its neighboring edges are removed from the graph.
    
    Parameters:
    
    operator - a non-interfering, stateless operator to apply to each vertex
  - applyEdges
```
public void applyEdges(UnaryOperator<E> operator)
```
    Apply the given operator over the edge set. If an edge is changed as a result of the function (on the basis of equality, e.g., edgeIn.equals(edgeOut)), the input edge between source and target is replaced with the output edge. If the output edge is null, the input edge is removed from the graph.
    
    Parameters:
    
    operator - a non-interfering, stateless operator to apply to each edge

Class SNTGraph<V,E extends org.jgrapht.graph.DefaultWeightedEdge>

Field Summary

Fields inherited from interface org.jgrapht.Graph

Constructor Summary

Method Summary

Methods inherited from class org.jgrapht.graph.AbstractBaseGraph

Methods inherited from class org.jgrapht.graph.AbstractGraph

Methods inherited from class java.lang.Object

Methods inherited from interface org.jgrapht.Graph

Constructor Detail

SNTGraph

Method Detail

setVertexColor

setEdgeColor

getVertexColor

getEdgeColor

setVertexValue

getVertexValue

getVertexColorRGBMap

getEdgeColorRGBMap

getVertexValueMap

filterVertices

filterEdges

applyVertices

applyEdges