Field Detail

• defaultBlendingRange

  public static float[] defaultBlendingRange

• defaultBlendingBorder

  public static float[] defaultBlendingBorder

• defaultAdjustBlendingForAnisotropy

  public static boolean defaultAdjustBlendingForAnisotropy

• defaultContentBasedSigma1

  public static double[] defaultContentBasedSigma1

• defaultContentBasedSigma2

  public static double[] defaultContentBasedSigma2

• defaultAdjustContentBasedSigmaForAnisotropy

  public static boolean defaultAdjustContentBasedSigmaForAnisotropy

• spimData

  protected final SpimData2 spimData

Constructor Detail

• ProcessFusion

  public ProcessFusion(SpimData2 spimData,
                       List<ViewId> viewIdsToProcess,
                       BoundingBoxGUI bb,
                       boolean useBlending,
                       boolean useContentBased)

Method Detail

• fuseStack

  public abstract <T extends RealType<T> & NativeType<T>> Img<T> fuseStack(T type,
                                                                           InterpolatorFactory<T,RandomAccessible<T>> interpolatorFactory,
                                                                           TimePoint timepoint,
                                                                           Channel channel)

• getBlending

  protected Blending getBlending(Interval interval,
                                 ViewDescription desc,
                                 ImgLoader imgLoader)

• getContentBased

  protected <T extends RealType<T>> ContentBased<T> getContentBased(RandomAccessibleInterval<T> img,
                                                                    ViewDescription desc,
                                                                    ImgLoader imgLoader)

• getAllWeights

  protected <T extends RealType<T>> ArrayList<RealRandomAccessible<FloatType>> getAllWeights(RandomAccessibleInterval<T> img,
                                                                                             ViewDescription desc,
                                                                                             ImgLoader imgLoader)

• getMinRes

  public static double getMinRes(ViewDescription desc,
                                 ImgLoader imgLoader)

• getTransform

  protected AffineTransform3D getTransform(ViewDescription inputData)

• getTransforms

  protected AffineTransform3D[] getTransforms(ArrayList<ViewDescription> inputData)

• getImage

  public static <T extends RealType<T>> RandomAccessibleInterval<T> getImage(T type,
                                                                             SpimData2 spimData,
                                                                             ViewId view,
                                                                             boolean normalize)

• getImage

  public static <T extends RealType<T>> RandomAccessibleInterval<T> getImage(T type,
                                                                             ImgLoader imgLoader,
                                                                             ViewId view,
                                                                             boolean normalize)