AbstractSequenceDescription (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<V,D,L>

Type Parameters:

V - ViewSetup type

Direct Known Subclasses:

SequenceDescription, SequenceDescriptionMinimal
```
public abstract class AbstractSequenceDescription<V extends BasicViewSetup,D extends BasicViewDescription<V>,L extends BasicImgLoader>
extends Object
```
A SPIM sequence consisting of a list of timepoints and a list of view setups. Every (timepoint, setup) pair is a view (i.e., an image stack acquired at that time with that setup).

Author:

Tobias Pietzsch <tobias.pietzsch@gmail.com>

Constructor Summary

Constructors
Modifier	Constructor and Description
`protected`	`AbstractSequenceDescription()`
	`AbstractSequenceDescription(TimePoints timepoints, Map<Integer,? extends V> setups, L imgLoader, MissingViews missingViews)`

Method Summary

All Methods Instance Methods Abstract Methods Concrete Methods
Modifier and Type	Method and Description
`protected abstract D`	`createViewDescription(int timepointId, int setupId)`
`protected void`	`createViewDescriptions()`
`L`	`getImgLoader()`
`MissingViews`	`getMissingViews()`
`TimePoints`	`getTimePoints()`
`Map<ViewId,D>`	`getViewDescriptions()`
`Map<Integer,? extends V>`	`getViewSetups()`
`List<V>`	`getViewSetupsOrdered()`
`void`	`setImgLoader(L imgLoader)`
`protected void`	`setMissingViews(MissingViews missingViews)`
`protected void`	`setTimePoints(TimePoints timepoints)`
`protected void`	`setViewSetups(Map<Integer,? extends V> setups)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractSequenceDescription

public AbstractSequenceDescription(TimePoints timepoints,
                                   Map<Integer,? extends V> setups,
                                   L imgLoader,
                                   MissingViews missingViews)

AbstractSequenceDescription

protected AbstractSequenceDescription()

Method Detail

getTimePoints
```
public TimePoints getTimePoints()
```

getViewSetups

public Map<Integer,? extends V> getViewSetups()

getViewSetupsOrdered
```
public List<V> getViewSetupsOrdered()
```

getImgLoader
```
public L getImgLoader()
```

getMissingViews
```
public MissingViews getMissingViews()
```

getViewDescriptions

public Map<ViewId,D> getViewDescriptions()

setTimePoints

protected void setTimePoints(TimePoints timepoints)

setViewSetups

protected void setViewSetups(Map<Integer,? extends V> setups)

setImgLoader

public void setImgLoader(L imgLoader)

setMissingViews

protected void setMissingViews(MissingViews missingViews)

createViewDescriptions

protected void createViewDescriptions()

createViewDescription

protected abstract D createViewDescription(int timepointId,
                                           int setupId)

Class AbstractSequenceDescription<V extends BasicViewSetup,D extends BasicViewDescription<V>,L extends BasicImgLoader>

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

AbstractSequenceDescription

AbstractSequenceDescription

Method Detail

getTimePoints

getViewSetups

getViewSetupsOrdered

getImgLoader

getMissingViews

getViewDescriptions

setTimePoints

setViewSetups

setImgLoader

setMissingViews

createViewDescriptions

createViewDescription