Stitch_Image_Collection (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- Stitch_Image_Collection

All Implemented Interfaces:: ij.plugin.PlugIn

public class Stitch_Image_Collection
extends Object
implements ij.plugin.PlugIn

Field Summary

Fields
Modifier and Type	Field and Description
`double`	`alpha`
`static double`	`alphaStatic`
`static boolean`	`computeOverlapStatic`
`int`	`dim`
`static String`	`fileNameStatic`
`static String`	`fusionMethodStatic`
`static String`	`handleRGBStatic`
`static boolean`	`previewOnlyStatic`
`String`	`rgbOrder`
`static String`	`rgbOrderStatic`
`double`	`thresholdDisplacementAbsolute`
`static double`	`thresholdDisplacementAbsoluteStatic`
`double`	`thresholdDisplacementRelative`
`static double`	`thresholdDisplacementRelativeStatic`
`double`	`thresholdR`
`static double`	`thresholdRStatic`

Constructor Summary

Constructors
Constructor and Description

Stitch_Image_Collection()

Constructors
Constructor and Description
`Stitch_Image_Collection()`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`static ij.ImagePlus`	`fuseImages(ArrayList<ImageInformation> imageInformationList, float[] max, String name, String fusionMethod, String rgbOrder, int dim, double alpha, boolean showOutput)`
`protected static float[]`	`getAndApplyMinMax(ArrayList<ImageInformation> imageInformationList, int dim)`
`static BufferedReader`	`openFileRead(String fileName)`
`void`	`run(String arg0)`
`protected static ij.measure.Calibration`	`updateCalibration(ij.measure.Calibration cal, ij.measure.Calibration newOne)`
`ij.ImagePlus`	`work(ArrayList<ImageInformation> imageInformationList, boolean createPreview, boolean computeOverlap, String fusionMethod, String handleRGB, String fileName, boolean showImage)`
`ij.ImagePlus`	`work(GridLayout gridLayout, boolean createPreview, boolean computeOverlap, String fileName, boolean showImage)`
`ij.ImagePlus`	`work(String fileName, boolean createPreview, boolean computeOverlap, String fusionMethod, String handleRGB, boolean showImage)`
`protected void`	`writeOutputConfiguration(String fileName, ArrayList<ImageInformation> imageInformationList)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

dim
```
public int dim
```

alpha
```
public double alpha
```

thresholdR
```
public double thresholdR
```

thresholdDisplacementRelative

public double thresholdDisplacementRelative

thresholdDisplacementAbsolute

public double thresholdDisplacementAbsolute

rgbOrder
```
public String rgbOrder
```

fileNameStatic
```
public static String fileNameStatic
```

computeOverlapStatic

public static boolean computeOverlapStatic

handleRGBStatic
```
public static String handleRGBStatic
```

rgbOrderStatic
```
public static String rgbOrderStatic
```

fusionMethodStatic

public static String fusionMethodStatic

alphaStatic
```
public static double alphaStatic
```

thresholdRStatic
```
public static double thresholdRStatic
```

thresholdDisplacementRelativeStatic

public static double thresholdDisplacementRelativeStatic

thresholdDisplacementAbsoluteStatic

public static double thresholdDisplacementAbsoluteStatic

previewOnlyStatic

public static boolean previewOnlyStatic

Constructor Detail
- Stitch_Image_Collection
```
public Stitch_Image_Collection()
```

Method Detail

run
```
public void run(String arg0)
```
Specified by:

run in interface ij.plugin.PlugIn

work

public ij.ImagePlus work(String fileName,
                         boolean createPreview,
                         boolean computeOverlap,
                         String fusionMethod,
                         String handleRGB,
                         boolean showImage)

work

public ij.ImagePlus work(GridLayout gridLayout,
                         boolean createPreview,
                         boolean computeOverlap,
                         String fileName,
                         boolean showImage)

work

public ij.ImagePlus work(ArrayList<ImageInformation> imageInformationList,
                         boolean createPreview,
                         boolean computeOverlap,
                         String fusionMethod,
                         String handleRGB,
                         String fileName,
                         boolean showImage)

writeOutputConfiguration

protected void writeOutputConfiguration(String fileName,
                                        ArrayList<ImageInformation> imageInformationList)

fuseImages

public static ij.ImagePlus fuseImages(ArrayList<ImageInformation> imageInformationList,
                                      float[] max,
                                      String name,
                                      String fusionMethod,
                                      String rgbOrder,
                                      int dim,
                                      double alpha,
                                      boolean showOutput)

updateCalibration

protected static ij.measure.Calibration updateCalibration(ij.measure.Calibration cal,
                                                          ij.measure.Calibration newOne)

getAndApplyMinMax

protected static float[] getAndApplyMinMax(ArrayList<ImageInformation> imageInformationList,
                                           int dim)

openFileRead

public static BufferedReader openFileRead(String fileName)

Class Stitch_Image_Collection

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

dim

alpha

thresholdR

thresholdDisplacementRelative

thresholdDisplacementAbsolute

rgbOrder

fileNameStatic

computeOverlapStatic

handleRGBStatic

rgbOrderStatic

fusionMethodStatic

alphaStatic

thresholdRStatic

thresholdDisplacementRelativeStatic

thresholdDisplacementAbsoluteStatic

previewOnlyStatic

Constructor Detail

Stitch_Image_Collection

Method Detail

run

work

work

work

writeOutputConfiguration

fuseImages

updateCalibration

getAndApplyMinMax

openFileRead