Constructor Detail

• InitializeViewerState

  public InitializeViewerState()

Method Detail

• initTransform

  public static void initTransform(ViewerPanel viewer)

  Set a "good" initial viewer transform. The viewer transform is chosen such that for the first source,

  • the XY plane is aligned with the screen plane,
  • the z = dim_z / 2 slice is shown,
  • centered and scaled such that the full dim_x by dim_y is visible.

  This calls initTransform(int, int, boolean, ViewerState), using the size of the viewer's display component.

  Parameters:

  viewer - the viewer (containing at least one source) to have its transform set.

• initTransform

  public static AffineTransform3D initTransform(int viewerWidth,
                                                int viewerHeight,
                                                boolean zoomedIn,
                                                ViewerState state)

  Get a "good" initial viewer transform. The viewer transform is chosen such that for the first source,

  • the XY plane is aligned with the screen plane,
  • the z = dim_z / 2 slice is shown,
  • centered and scaled such that the full dim_x by dim_y is visible.

  Parameters:

  viewerWidth - width of the viewer display

  viewerHeight - height of the viewer display

  state - the ViewerState containing at least one source.

  Returns:

  proposed initial viewer transform.

• initBrightness

  public static void initBrightness(double cumulativeMinCutoff,
                                    double cumulativeMaxCutoff,
                                    ViewerFrame viewerFrame)

• initBrightness

  public static void initBrightness(double cumulativeMinCutoff,
                                    double cumulativeMaxCutoff,
                                    ViewerState state,
                                    ConverterSetups converterSetups)

• estimateSourceRange

  public static Bounds estimateSourceRange(Source<?> source,
                                           int timepoint,
                                           double cumulativeMinCutoff,
                                           double cumulativeMaxCutoff)

  Parameters:

  cumulativeMinCutoff - fraction of pixels that are allowed to be saturated at the lower end of the range.

  cumulativeMaxCutoff - fraction of pixels that are allowed to be saturated at the upper end of the range.

• initTransform

  @Deprecated
  public static AffineTransform3D initTransform(int viewerWidth,
                                                            int viewerHeight,
                                                            boolean zoomedIn,
                                                            ViewerState state)

  Deprecated. 

• initBrightness

  @Deprecated
  public static void initBrightness(double cumulativeMinCutoff,
                                                double cumulativeMaxCutoff,
                                                ViewerState state,
                                                SetupAssignments setupAssignments)

  Deprecated. 

• initBrightness

  @Deprecated
  public static void initBrightness(double cumulativeMinCutoff,
                                                double cumulativeMaxCutoff,
                                                ViewerPanel viewer,
                                                SetupAssignments setupAssignments)

  Deprecated. 

• initBrightness

  @Deprecated
  public static void initBrightness(double cumulativeMinCutoff,
                                                double cumulativeMaxCutoff,
                                                ViewerState state,
                                                SetupAssignments setupAssignments)

  Deprecated.