Stitching_3D (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- Stitching_3D

All Implemented Interfaces:: ij.plugin.PlugIn

public class Stitching_3D
extends Object
implements ij.plugin.PlugIn

Field Summary

Fields
Modifier and Type	Field and Description
`double`	`alpha`
`static double`	`alphaStatic`
`int`	`checkPeaks`
`static int`	`checkPeaksStatic`
`boolean`	`computeOverlap`
`static boolean`	`computeOverlapStatic`
`boolean`	`coregister`
`static boolean`	`coregisterStatic`
`boolean`	`doLogging`
`String`	`fusedImageName`
`boolean`	`fuseImages`
`static boolean`	`fuseImagesStatic`
`String`	`handleRGB1`
`static String`	`handleRGB1Static`
`String`	`handleRGB2`
`static String`	`handleRGB2Static`
`String`	`imgStack1`
`String`	`imgStack2`
`ij.ImagePlus`	`imp1`
`ij.ImagePlus`	`imp2`
`String`	`method`
`static String`	`methodStatic`
`double`	`minOverlap`
`int`	`numberOfChannels`
`static int`	`numberOfChannelsStatic`
`boolean`	`wasIndexed`
`boolean`	`windowing`
`static boolean`	`windowingStatic`
`int`	`xOffset`
`static int`	`xOffsetStatic`
`int`	`yOffset`
`static int`	`yOffsetStatic`
`int`	`zOffset`
`static int`	`zOffsetStatic`

Constructor Summary

Constructors
Constructor and Description
`Stitching_3D()`
`Stitching_3D(boolean windowing1, int checkPeaks1, boolean fuseImages1, String method1, String fusedImageName1)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`static void`	`addEnablerListener(Checkbox master, Component[] enable, Component[] disable)`
`static void`	`addInverseEnablerListener(Checkbox master, Component[] enable, Component[] disable)`
`static ArrayList<Point3D>`	`findPeaks(FloatArray3D invPCM, Point3D img1, Point3D img2, Point3D ext1, Point3D ext2, int checkPeaks)`
`CrossCorrelationResult3D`	`getCrossCorrelationResult()`
`CrossCorrelationResult3D[]`	`getCrossCorrelationResults()`
`Point3D`	`getTranslation()`
`void`	`run(String args)`
`void`	`work()`
`void`	`work(FloatArray3D inputImage1, FloatArray3D inputImage2)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

imgStack1
```
public String imgStack1
```

imgStack2
```
public String imgStack2
```

fusedImageName
```
public String fusedImageName
```

methodStatic
```
public static String methodStatic
```

handleRGB1Static
```
public static String handleRGB1Static
```

handleRGB2Static
```
public static String handleRGB2Static
```

fuseImagesStatic
```
public static boolean fuseImagesStatic
```

windowingStatic
```
public static boolean windowingStatic
```

coregisterStatic
```
public static boolean coregisterStatic
```

computeOverlapStatic

public static boolean computeOverlapStatic

checkPeaksStatic
```
public static int checkPeaksStatic
```

numberOfChannelsStatic

public static int numberOfChannelsStatic

alphaStatic
```
public static double alphaStatic
```

xOffsetStatic
```
public static int xOffsetStatic
```

yOffsetStatic
```
public static int yOffsetStatic
```

zOffsetStatic
```
public static int zOffsetStatic
```

method
```
public String method
```

handleRGB1
```
public String handleRGB1
```

handleRGB2
```
public String handleRGB2
```

fuseImages
```
public boolean fuseImages
```

windowing
```
public boolean windowing
```

coregister
```
public boolean coregister
```

computeOverlap
```
public boolean computeOverlap
```

checkPeaks
```
public int checkPeaks
```

numberOfChannels
```
public int numberOfChannels
```

alpha
```
public double alpha
```

xOffset
```
public int xOffset
```

yOffset
```
public int yOffset
```

zOffset
```
public int zOffset
```

imp1
```
public ij.ImagePlus imp1
```

imp2
```
public ij.ImagePlus imp2
```

wasIndexed
```
public boolean wasIndexed
```

doLogging
```
public boolean doLogging
```

minOverlap
```
public double minOverlap
```

Constructor Detail

Stitching_3D
```
public Stitching_3D()
```

Stitching_3D

public Stitching_3D(boolean windowing1,
                    int checkPeaks1,
                    boolean fuseImages1,
                    String method1,
                    String fusedImageName1)

Method Detail

getTranslation
```
public Point3D getTranslation()
```

getCrossCorrelationResults

public CrossCorrelationResult3D[] getCrossCorrelationResults()

getCrossCorrelationResult

public CrossCorrelationResult3D getCrossCorrelationResult()

run
```
public void run(String args)
```
Specified by:

run in interface ij.plugin.PlugIn

addEnablerListener

public static final void addEnablerListener(Checkbox master,
                                            Component[] enable,
                                            Component[] disable)

addInverseEnablerListener

public static final void addInverseEnablerListener(Checkbox master,
                                                   Component[] enable,
                                                   Component[] disable)

work
```
public void work()
```

work

public void work(FloatArray3D inputImage1,
                 FloatArray3D inputImage2)

findPeaks

public static ArrayList<Point3D> findPeaks(FloatArray3D invPCM,
                                           Point3D img1,
                                           Point3D img2,
                                           Point3D ext1,
                                           Point3D ext2,
                                           int checkPeaks)

Class Stitching_3D

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

imgStack1

imgStack2

fusedImageName

methodStatic

handleRGB1Static

handleRGB2Static

fuseImagesStatic

windowingStatic

coregisterStatic

computeOverlapStatic

checkPeaksStatic

numberOfChannelsStatic

alphaStatic

xOffsetStatic

yOffsetStatic

zOffsetStatic

method

handleRGB1

handleRGB2

fuseImages

windowing

coregister

computeOverlap

checkPeaks

numberOfChannels

alpha

xOffset

yOffset

zOffset

imp1

imp2

wasIndexed

doLogging

minOverlap

Constructor Detail

Stitching_3D

Stitching_3D

Method Detail

getTranslation

getCrossCorrelationResults

getCrossCorrelationResult

run

addEnablerListener

addInverseEnablerListener

work

work

findPeaks