ElasticLayerAlignment.Param (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- mpicbg.trakem2.align.AbstractLayerAlignmentParam
- - mpicbg.trakem2.align.ElasticLayerAlignment.Param

All Implemented Interfaces:: Serializable

Enclosing class:: ElasticLayerAlignment

public static final class ElasticLayerAlignment.Param
extends AbstractLayerAlignmentParam
implements Serializable

See Also:: Serialized Form

Field Summary

Fields
Modifier and Type	Field and Description
`int`	`blockRadius`
`double`	`dampSpringMesh`
`boolean`	`isAligned`
`double`	`layerScale`
`int`	`localModelIndex`
`float`	`localRegionSigma`
`float`	`maxCurvatureR`
`int`	`maxIterationsSpringMesh`
`float`	`maxLocalEpsilon`
`float`	`maxLocalTrust`
`int`	`maxPlateauwidthSpringMesh`
`double`	`maxStretchSpringMesh`
`float`	`minR`
`int`	`resolutionSpringMesh`
`float`	`rodR`
`int`	`searchRadius`
`double`	`stiffnessSpringMesh`
`boolean`	`useLegacyOptimizer`
`boolean`	`useLocalSmoothnessFilter`
`boolean`	`useTps`

Fields inherited from class mpicbg.trakem2.align.AbstractLayerAlignmentParam
desiredModelIndex, expectedModelIndex, identityTolerance, maxEpsilon, maxIterationsOptimize, maxNumFailures, maxNumNeighbors, maxNumThreads, maxPlateauwidthOptimize, minInlierRatio, minNumInliers, modelStrings, multipleHypotheses, ppm, rejectIdentity, visualize, widestSetOnly

Constructor Summary

Constructors
Constructor and Description
`Param()`
Param(int SIFTfdBins, int SIFTfdSize, float SIFTinitialSigma, int SIFTmaxOctaveSize, int SIFTminOctaveSize, int SIFTsteps, boolean clearCache, int maxNumThreadsSift, float rod, int desiredModelIndex, int expectedModelIndex, float identityTolerance, boolean isAligned, float maxEpsilon, int maxIterationsOptimize, int maxNumFailures, int maxNumNeighbors, int maxNumThreads, int maxPlateauwidthOptimize, float minInlierRatio, int minNumInliers, boolean multipleHypotheses, boolean widestSetOnly, boolean rejectIdentity, boolean visualize, int blockRadius, double dampSpringMesh, double layerScale, int localModelIndex, float localRegionSigma, float maxCurvatureR, int maxIterationsSpringMesh, float maxLocalEpsilon, float maxLocalTrust, int maxPlateauwidthSpringMesh, boolean useLegacyOptimizer, double maxStretchSpringMesh, float minR, int resolutionSpringMesh, float rodR, int searchRadius, double stiffnessSpringMesh, boolean useLocalSmoothnessFilter, boolean useTps)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type Method and Description

ElasticLayerAlignment.Param clone()

boolean setup(Rectangle box)
- Methods inherited from class mpicbg.trakem2.align.AbstractLayerAlignmentParam
  setupSIFT
- Methods inherited from class java.lang.Object
  equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`ElasticLayerAlignment.Param`	`clone()`
`boolean`	`setup(Rectangle box)`

Field Detail

isAligned
```
public boolean isAligned
```

layerScale
```
public double layerScale
```

minR
```
public float minR
```

maxCurvatureR
```
public float maxCurvatureR
```

rodR
```
public float rodR
```

searchRadius
```
public int searchRadius
```

blockRadius
```
public int blockRadius
```

useLocalSmoothnessFilter

public boolean useLocalSmoothnessFilter

localModelIndex
```
public int localModelIndex
```

localRegionSigma
```
public float localRegionSigma
```

maxLocalEpsilon
```
public float maxLocalEpsilon
```

maxLocalTrust
```
public float maxLocalTrust
```

resolutionSpringMesh
```
public int resolutionSpringMesh
```

stiffnessSpringMesh
```
public double stiffnessSpringMesh
```

dampSpringMesh
```
public double dampSpringMesh
```

maxStretchSpringMesh
```
public double maxStretchSpringMesh
```

maxIterationsSpringMesh
```
public int maxIterationsSpringMesh
```

maxPlateauwidthSpringMesh
```
public int maxPlateauwidthSpringMesh
```

useLegacyOptimizer
```
public boolean useLegacyOptimizer
```

useTps
```
public boolean useTps
```

Constructor Detail

Param
```
public Param()
```

Param

public Param(int SIFTfdBins,
             int SIFTfdSize,
             float SIFTinitialSigma,
             int SIFTmaxOctaveSize,
             int SIFTminOctaveSize,
             int SIFTsteps,
             boolean clearCache,
             int maxNumThreadsSift,
             float rod,
             int desiredModelIndex,
             int expectedModelIndex,
             float identityTolerance,
             boolean isAligned,
             float maxEpsilon,
             int maxIterationsOptimize,
             int maxNumFailures,
             int maxNumNeighbors,
             int maxNumThreads,
             int maxPlateauwidthOptimize,
             float minInlierRatio,
             int minNumInliers,
             boolean multipleHypotheses,
             boolean widestSetOnly,
             boolean rejectIdentity,
             boolean visualize,
             int blockRadius,
             double dampSpringMesh,
             double layerScale,
             int localModelIndex,
             float localRegionSigma,
             float maxCurvatureR,
             int maxIterationsSpringMesh,
             float maxLocalEpsilon,
             float maxLocalTrust,
             int maxPlateauwidthSpringMesh,
             boolean useLegacyOptimizer,
             double maxStretchSpringMesh,
             float minR,
             int resolutionSpringMesh,
             float rodR,
             int searchRadius,
             double stiffnessSpringMesh,
             boolean useLocalSmoothnessFilter,
             boolean useTps)

Method Detail

setup
```
public boolean setup(Rectangle box)
```

clone
```
public ElasticLayerAlignment.Param clone()
```
Overrides:

clone in class AbstractLayerAlignmentParam

Class ElasticLayerAlignment.Param

Field Summary

Fields inherited from class mpicbg.trakem2.align.AbstractLayerAlignmentParam

Constructor Summary

Method Summary

Methods inherited from class mpicbg.trakem2.align.AbstractLayerAlignmentParam

Methods inherited from class java.lang.Object

Field Detail

isAligned

layerScale

minR

maxCurvatureR

rodR

searchRadius

blockRadius

useLocalSmoothnessFilter

localModelIndex

localRegionSigma

maxLocalEpsilon

maxLocalTrust

resolutionSpringMesh

stiffnessSpringMesh

dampSpringMesh

maxStretchSpringMesh

maxIterationsSpringMesh

maxPlateauwidthSpringMesh

useLegacyOptimizer

useTps

Constructor Detail

Param

Param

Method Detail

setup

clone