Compare.CATAParameters (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- ini.trakem2.analysis.Compare.CATAParameters

Enclosing class:: Compare

public static class Compare.CATAParameters
extends Object

Compare all to all parameters.

Field Summary

Fields
Modifier and Type	Field and Description
`boolean`	`chain_branches`
`boolean`	`cut_uneven_ends`
`double`	`delta`
`double`	`delta_envelope`
`boolean`	`direct`
`int`	`distance_type`
`int`	`distance_type_2`
`int`	`envelope_type`
`String`	`format`
`String[]`	`formats`
`int`	`max_mut`
`float`	`min_chunk`
`int`	`min_matches`
`boolean`	`normalize`
`int`	`plot_height`
`double`	`plot_max_x`
`double`	`plot_max_y`
`int`	`plot_width`
`String[]`	`preset`
`String[]`	`preset_names`
`String[][]`	`presets`
`String`	`regex`
`boolean`	`score_mut_only`
`boolean`	`skip_ends`
`boolean`	`substring_matching`
`int`	`transform_type`
`boolean`	`with_source`

Constructor Summary

Constructors
Constructor and Description

CATAParameters()

Constructors
Constructor and Description
`CATAParameters()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type Method and Description

boolean setup(boolean to_file, String regex, boolean plot, boolean condense)
- Methods inherited from class java.lang.Object
  clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`boolean`	`setup(boolean to_file, String regex, boolean plot, boolean condense)`

Field Detail

delta
```
public double delta
```

skip_ends
```
public boolean skip_ends
```

max_mut
```
public int max_mut
```

min_chunk
```
public float min_chunk
```

score_mut_only
```
public boolean score_mut_only
```

transform_type
```
public int transform_type
```

chain_branches
```
public boolean chain_branches
```

presets
```
public final String[][] presets
```

preset
```
public String[] preset
```

preset_names
```
public final String[] preset_names
```

formats
```
public final String[] formats
```

format
```
public String format
```

distance_type
```
public int distance_type
```

distance_type_2
```
public int distance_type_2
```

min_matches
```
public int min_matches
```

normalize
```
public boolean normalize
```

direct
```
public boolean direct
```

substring_matching
```
public boolean substring_matching
```

regex
```
public String regex
```

with_source
```
public boolean with_source
```

plot_max_x
```
public double plot_max_x
```

plot_max_y
```
public double plot_max_y
```

plot_width
```
public int plot_width
```

plot_height
```
public int plot_height
```

cut_uneven_ends
```
public boolean cut_uneven_ends
```

envelope_type
```
public int envelope_type
```

delta_envelope
```
public double delta_envelope
```

Constructor Detail
- CATAParameters
```
public CATAParameters()
```

Method Detail

setup

public boolean setup(boolean to_file,
                     String regex,
                     boolean plot,
                     boolean condense)

Class Compare.CATAParameters

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

delta

skip_ends

max_mut

min_chunk

score_mut_only

transform_type

chain_branches

presets

preset

preset_names

formats

format

distance_type

distance_type_2

min_matches

normalize

direct

substring_matching

regex

with_source

plot_max_x

plot_max_y

plot_width

plot_height

cut_uneven_ends

envelope_type

delta_envelope

Constructor Detail

CATAParameters

Method Detail

setup