ImageJFunctions (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- mpicbg.imglib.image.display.imagej.ImageJFunctions

public class ImageJFunctions
extends Object

TODO

Author:: Stephan Preibisch, Stephan Saalfeld

Field Summary

Fields
Modifier and Type Field and Description

static int COLOR_RGB

static int GRAY32

static int GRAY8

Fields
Modifier and Type	Field and Description
`static int`	`COLOR_RGB`
`static int`	`GRAY32`
`static int`	`GRAY8`

Constructor Summary

Constructors
Constructor and Description

ImageJFunctions()

Constructors
Constructor and Description
`ImageJFunctions()`

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method and Description
`static Image<FloatType>`	`convertFloat(ij.ImagePlus imp)`
`static <T extends Type<T>> ij.ImagePlus`	`copyToImagePlus(Image<T> img)`
`static <T extends Type<T>> ij.ImagePlus`	`copyToImagePlus(Image<T> img, int type)`
`static <T extends Type<T>> ij.ImagePlus`	`copyToImagePlus(Image<T> img, int[] dim)`
`static <T extends Type<T>> ij.ImagePlus`	`copyToImagePlus(Image<T> img, int type, int[] dim)`
`static <T extends Type<T>> ij.ImagePlus`	`copyToImagePlus(Image<T> img, int type, int[] dim, int[] dimensionPositions)`
`protected static <T extends Type<T>> ij.ImagePlus`	`createImagePlus(Image<T> img, String name, int type, int[] dim, int[] dimensionPositions)`
`static <T extends Type<T>> ij.ImagePlus`	`displayAsVirtualStack(Collection<InverseTransformDescription<T>> interpolators, int type, int[] dim, int[] dimensionPositions)`
`static <T extends Type<T>> ij.ImagePlus`	`displayAsVirtualStack(Collection<InverseTransformDescription<T>> interpolators, int type, int[] dim, int[] dimensionPositions, float[][] minMaxDim)`
`static <T extends Type<T>> ij.ImagePlus`	`displayAsVirtualStack(Image<T> img)`
`static <T extends Type<T>> ij.ImagePlus`	`displayAsVirtualStack(Image<T> img, int type)`
`static <T extends Type<T>> ij.ImagePlus`	`displayAsVirtualStack(Image<T> img, int[] dim)`
`static <T extends Type<T>> ij.ImagePlus`	`displayAsVirtualStack(Image<T> img, int type, int[] dim)`
`static <T extends Type<T>> ij.ImagePlus`	`displayAsVirtualStack(Image<T> img, int type, int[] dim, int[] dimensionPositions)`
`protected static <T extends Type<T>> ij.process.ImageProcessor`	`extract2DSlice(Image<T> img, Display<T> display, int type, int dimX, int dimY, int[] dimensionPositions)`
`protected static int[]`	`getDim3(int[] dim)`
`protected static int[]`	`getStandardDimensions()`
`static <T extends Type<T>> boolean`	`saveAsTiffs(Image<T> img, String directory, int type)`
`static <T extends Type<T>> boolean`	`saveAsTiffs(Image<T> img, String directory, String name, int type)`
`static <T extends Type<T>> ij.ImagePlus`	`show(Image<T> img)`
`static <T extends RealType<T>> Image<T>`	`wrap(ij.ImagePlus imp)`
`static Image<UnsignedByteType>`	`wrapByte(ij.ImagePlus imp)`
`static Image<FloatType>`	`wrapFloat(ij.ImagePlus imp)`
`static Image<RGBALegacyType>`	`wrapRGBA(ij.ImagePlus imp)`
`static Image<UnsignedShortType>`	`wrapShort(ij.ImagePlus imp)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail
- GRAY8
```
public static final int GRAY8
```
  See Also:
  
  Constant Field Values
- GRAY32
```
public static final int GRAY32
```
  See Also:
  
  Constant Field Values
- COLOR_RGB
```
public static final int COLOR_RGB
```
  See Also:
  
  Constant Field Values

Constructor Detail
- ImageJFunctions
```
public ImageJFunctions()
```

Method Detail

displayAsVirtualStack

public static <T extends Type<T>> ij.ImagePlus displayAsVirtualStack(Collection<InverseTransformDescription<T>> interpolators,
                                                                     int type,
                                                                     int[] dim,
                                                                     int[] dimensionPositions)

displayAsVirtualStack

public static <T extends Type<T>> ij.ImagePlus displayAsVirtualStack(Collection<InverseTransformDescription<T>> interpolators,
                                                                     int type,
                                                                     int[] dim,
                                                                     int[] dimensionPositions,
                                                                     float[][] minMaxDim)

wrap

public static <T extends RealType<T>> Image<T> wrap(ij.ImagePlus imp)

wrapByte

public static Image<UnsignedByteType> wrapByte(ij.ImagePlus imp)

wrapShort

public static Image<UnsignedShortType> wrapShort(ij.ImagePlus imp)

wrapRGBA

public static Image<RGBALegacyType> wrapRGBA(ij.ImagePlus imp)

wrapFloat

public static Image<FloatType> wrapFloat(ij.ImagePlus imp)

convertFloat

public static Image<FloatType> convertFloat(ij.ImagePlus imp)

displayAsVirtualStack

public static <T extends Type<T>> ij.ImagePlus displayAsVirtualStack(Image<T> img)

displayAsVirtualStack

public static <T extends Type<T>> ij.ImagePlus displayAsVirtualStack(Image<T> img,
                                                                     int type)

displayAsVirtualStack

public static <T extends Type<T>> ij.ImagePlus displayAsVirtualStack(Image<T> img,
                                                                     int type,
                                                                     int[] dim)

displayAsVirtualStack

public static <T extends Type<T>> ij.ImagePlus displayAsVirtualStack(Image<T> img,
                                                                     int[] dim)

displayAsVirtualStack

public static <T extends Type<T>> ij.ImagePlus displayAsVirtualStack(Image<T> img,
                                                                     int type,
                                                                     int[] dim,
                                                                     int[] dimensionPositions)

show

public static <T extends Type<T>> ij.ImagePlus show(Image<T> img)

copyToImagePlus

public static <T extends Type<T>> ij.ImagePlus copyToImagePlus(Image<T> img)

copyToImagePlus

public static <T extends Type<T>> ij.ImagePlus copyToImagePlus(Image<T> img,
                                                               int type)

copyToImagePlus

public static <T extends Type<T>> ij.ImagePlus copyToImagePlus(Image<T> img,
                                                               int[] dim)

copyToImagePlus

public static <T extends Type<T>> ij.ImagePlus copyToImagePlus(Image<T> img,
                                                               int type,
                                                               int[] dim)

copyToImagePlus

public static <T extends Type<T>> ij.ImagePlus copyToImagePlus(Image<T> img,
                                                               int type,
                                                               int[] dim,
                                                               int[] dimensionPositions)

getStandardDimensions

protected static int[] getStandardDimensions()

getDim3

protected static int[] getDim3(int[] dim)

saveAsTiffs

public static <T extends Type<T>> boolean saveAsTiffs(Image<T> img,
                                                      String directory,
                                                      int type)

saveAsTiffs

public static <T extends Type<T>> boolean saveAsTiffs(Image<T> img,
                                                      String directory,
                                                      String name,
                                                      int type)

extract2DSlice

protected static <T extends Type<T>> ij.process.ImageProcessor extract2DSlice(Image<T> img,
                                                                              Display<T> display,
                                                                              int type,
                                                                              int dimX,
                                                                              int dimY,
                                                                              int[] dimensionPositions)

createImagePlus

protected static <T extends Type<T>> ij.ImagePlus createImagePlus(Image<T> img,
                                                                  String name,
                                                                  int type,
                                                                  int[] dim,
                                                                  int[] dimensionPositions)

Class ImageJFunctions

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

GRAY8

GRAY32

COLOR_RGB

Constructor Detail

ImageJFunctions

Method Detail

displayAsVirtualStack

displayAsVirtualStack

wrap

wrapByte

wrapShort

wrapRGBA

wrapFloat

convertFloat

displayAsVirtualStack

displayAsVirtualStack

displayAsVirtualStack

displayAsVirtualStack

displayAsVirtualStack

show

copyToImagePlus

copyToImagePlus

copyToImagePlus

copyToImagePlus

copyToImagePlus

getStandardDimensions

getDim3

saveAsTiffs

saveAsTiffs

extract2DSlice

createImagePlus