Field Detail

• conf

  protected SPIMConfiguration conf

• isolatedWeightenerFactories

  protected final ArrayList<IsolatedPixelWeightenerFactory<?>> isolatedWeightenerFactories

• combinedWeightenerFactories

  protected final ArrayList<CombinedPixelWeightenerFactory<?>> combinedWeightenerFactories

• min

  protected Point3f min

• max

  protected Point3f max

• size

  protected Point3f size

• location000

  protected Point3f location000

• cropOffsetX

  protected int cropOffsetX

• cropOffsetY

  protected int cropOffsetY

• cropOffsetZ

  protected int cropOffsetZ

• imgW

  protected int imgW

• imgH

  protected int imgH

• imgD

  protected int imgD

• scale

  protected int scale

• viewStructure

  protected final ViewStructure viewStructure

Constructor Detail

• SPIMImageFusion

  public SPIMImageFusion(ViewStructure viewStructure,
                         ViewStructure referenceViewStructure,
                         ArrayList<IsolatedPixelWeightenerFactory<?>> isolatedWeightenerFactories,
                         ArrayList<CombinedPixelWeightenerFactory<?>> combinedWeightenerFactories)

Method Detail

• fuseSPIMImages

  public abstract void fuseSPIMImages(int channelIndex)

• getFusedImage

  public abstract Image<FloatType> getFusedImage()

• getFusedImageCopy

  public ij.ImagePlus getFusedImageCopy()

• getFusedImageVirtual

  public ij.ImagePlus getFusedImageVirtual()

• closeImages

  public void closeImages()

• saveAsTiffs

  public boolean saveAsTiffs(String dir,
                             String name,
                             int channelIndex)

• getOutputImageMinCoordinate

  public Point3f getOutputImageMinCoordinate()

• getOutputImageMaxCoordinate

  public Point3f getOutputImageMaxCoordinate()

• getOutputImageSize

  public Point3f getOutputImageSize()

• initFusion

  protected void initFusion()

• computeFinalImageSize

  public void computeFinalImageSize(ArrayList<ViewDataBeads> views)

• computeImageSize

  public static void computeImageSize(ArrayList<ViewDataBeads> views,
                                      Point3f min,
                                      Point3f max,
                                      Point3f size,
                                      int scale,
                                      int cropSizeX,
                                      int cropSizeY,
                                      int cropSizeZ,
                                      int debugLevel)