NonLinearTransform (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- mpicbg.trakem2.transform.NonLinearCoordinateTransform
- - lenscorrection.NonLinearTransform

All Implemented Interfaces:

Serializable, CoordinateTransform
```
public class NonLinearTransform
extends NonLinearCoordinateTransform
```
See Also:

Serialized Form

Field Summary
- Fields inherited from class mpicbg.trakem2.transform.NonLinearCoordinateTransform
  beta, dimension, height, length, normMean, normVar, width

Constructor Summary

Constructors
Constructor and Description
`NonLinearTransform()`
`NonLinearTransform(double[][] b, double[] nm, double[] nv, int d, int w, int h)`
`NonLinearTransform(double[][] coeffMatrix, int w, int h)`
`NonLinearTransform(int d, int w, int h)`
`NonLinearTransform(String filename)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`NonLinearTransform`	`copy()` TODO Make this more efficient
`static void`	`drawGrid(GeneralPath g, double[][] points, int count, int s)`
`static void`	`drawQuiverField(GeneralPath qf, double x1, double y1, double x2, double y2)`
`void`	`estimateDistortion(double[][] hack1, double[][] hack2, double[][] transformParams, double lambda, int w, int h)`
`void`	`fit(double[][] x, double[][] y, double lambda)`
`double[][]`	`getCoefficients()`
`int`	`getDimension()`
`int`	`getHeight()`
`int`	`getMinNumMatches()`
`int`	`getWidth()`
`void`	`inverseTransform(double[][] range)`
`double[][]`	`kernelExpandMatrix(double[][] positions)`
`double[][]`	`kernelExpandMatrixNormalize(double[][] positions)`
`void`	`load(String filename)`
`void`	`print()`
`void`	`save(String filename)`
`void`	`set(NonLinearTransform nlt)`
`void`	`setBeta(double[][] b)`
`void`	`setDimension(int dimension)` Deletes all dimension dependent properties
`ij.process.ImageProcessor[]`	`transform(ij.process.ImageProcessor ip)`
`void`	`visualize()`
`void`	`visualizeSmall(double lambda)`

Methods inherited from class mpicbg.trakem2.transform.NonLinearCoordinateTransform
apply, applyInPlace, init, kernelExpand, multiply, toDataString, toString, toXML

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

NonLinearTransform

public NonLinearTransform(double[][] b,
                          double[] nm,
                          double[] nv,
                          int d,
                          int w,
                          int h)

NonLinearTransform

public NonLinearTransform(int d,
                          int w,
                          int h)

NonLinearTransform
```
public NonLinearTransform()
```

NonLinearTransform

public NonLinearTransform(String filename)

NonLinearTransform

public NonLinearTransform(double[][] coeffMatrix,
                          int w,
                          int h)

Method Detail

getDimension
```
public int getDimension()
```

setDimension
```
public void setDimension(int dimension)
```
Deletes all dimension dependent properties

getMinNumMatches
```
public int getMinNumMatches()
```

fit

public void fit(double[][] x,
                double[][] y,
                double lambda)

estimateDistortion

public void estimateDistortion(double[][] hack1,
                               double[][] hack2,
                               double[][] transformParams,
                               double lambda,
                               int w,
                               int h)

getCoefficients
```
public double[][] getCoefficients()
```

setBeta
```
public void setBeta(double[][] b)
```

print
```
public void print()
```

save
```
public void save(String filename)
```

load
```
public void load(String filename)
```

transform

public ij.process.ImageProcessor[] transform(ij.process.ImageProcessor ip)

kernelExpandMatrixNormalize

public double[][] kernelExpandMatrixNormalize(double[][] positions)

kernelExpandMatrix

public double[][] kernelExpandMatrix(double[][] positions)

inverseTransform

public void inverseTransform(double[][] range)

visualize
```
public void visualize()
```

visualizeSmall

public void visualizeSmall(double lambda)

drawGrid

public static void drawGrid(GeneralPath g,
                            double[][] points,
                            int count,
                            int s)

drawQuiverField

public static void drawQuiverField(GeneralPath qf,
                                   double x1,
                                   double y1,
                                   double x2,
                                   double y2)

getWidth
```
public int getWidth()
```

getHeight
```
public int getHeight()
```

copy
```
public final NonLinearTransform copy()
```
TODO Make this more efficient

Overrides:

copy in class NonLinearCoordinateTransform

set

public void set(NonLinearTransform nlt)

Class NonLinearTransform

Field Summary

Fields inherited from class mpicbg.trakem2.transform.NonLinearCoordinateTransform

Constructor Summary

Method Summary

Methods inherited from class mpicbg.trakem2.transform.NonLinearCoordinateTransform

Methods inherited from class java.lang.Object

Constructor Detail

NonLinearTransform

NonLinearTransform

NonLinearTransform

NonLinearTransform

NonLinearTransform

Method Detail

getDimension

setDimension

getMinNumMatches

fit

estimateDistortion

getCoefficients

setBeta

print

save

load

transform

kernelExpandMatrixNormalize

kernelExpandMatrix

inverseTransform

visualize

visualizeSmall

drawGrid

drawQuiverField

getWidth

getHeight

copy

set