Constructor Detail

• BatchConverter

  public BatchConverter(MasterModel masterModel)

Method Detail

• convertFile

  public void convertFile(String file,
                          String outputDir,
                          String format,
                          boolean verbose,
                          boolean sepDir)

• convertBatchFile

  public void convertBatchFile(String fileName)

  Provide a tab delimited "csv" file Format for each row: LSM_FILE\tOUTPUT_DIR\tFORMAT\tVERBOSE\tCREATE_SEPARATE_DIR

• process

  public ij.ImagePlus process(ij.ImagePlus imp)

  This is the place to add code to process each image. The image is not written if this method returns null.

• save

  public void save(ij.ImagePlus img,
                   String dir,
                   String format,
                   String fileName)

  method : save, saves the image with an appropriate file name