StatisticalOperation (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- mpicbg.imglib.algorithm.ROIAlgorithm<T,T>
- - mpicbg.imglib.algorithm.roi.StatisticalOperation<T>

Type Parameters:

T - The input- and output-Image type.

All Implemented Interfaces:

Algorithm, Benchmark, OutputAlgorithm<T>

Direct Known Subclasses:

MedianFilter, MorphDilate, MorphErode
```
public abstract class StatisticalOperation<T extends RealType<T>>
extends ROIAlgorithm<T,T>
```
StatisticalOperation provides the framework to create Order Statistic operations. It operates by cursing over the input Image, and collecting a sorted list of the pixels "covered" by a StructuringElement. This list is made available to children classes, which are responsible for setting the pixel value at the current position in the output Image.

Author:

Larry Lindsey

Nested Class Summary

Nested Classes
Modifier and Type	Class and Description
`class`	`StatisticalOperation.SimpleCollectionStrategy<R extends RealType<R>>` Simple, dumb statistics collection implementation.
`static interface`	`StatisticalOperation.StatisticsCollectionStrategy<R extends RealType<R>>` Implements a strategy for populating the sorted list associated with this StatisticalOperation.

Constructor Summary

Constructors
Constructor and Description
`StatisticalOperation(Image<T> imageIn, StructuringElement strel)`
`StatisticalOperation(Image<T> imageIn, StructuringElement inStrel, OutOfBoundsStrategyFactory<T> inOutFactory)`

Method Summary

All Methods Instance Methods Abstract Methods Concrete Methods
Modifier and Type	Method and Description
`boolean`	`checkInput()`
`void`	`close()`
`int[]`	`getLastPosition()`
`protected LinkedList<T>`	`getList()`
`StructuringElement`	`getStrel()`
`boolean`	`isInit()`
`protected boolean`	`patchOperation(int[] position, RegionOfInterestCursor<T> cursor)` Performs this algorithm's operation on the patch represented by a `RegionOfInterestCursor`
`void`	`reset()`
`protected abstract void`	`statsOp(LocalizableByDimCursor<T> cursor)` Perform the order statistic operation, then set the value of the type of the given cursor.

Methods inherited from class mpicbg.imglib.algorithm.ROIAlgorithm
getErrorMessage, getName, getOutputImage, getPatchSize, getProcessingTime, getResult, positionOffset, process, setErrorMessage, setImageFactory, setName

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - StatisticalOperation
```
public StatisticalOperation(Image<T> imageIn,
                            StructuringElement strel)
```
  - StatisticalOperation
```
public StatisticalOperation(Image<T> imageIn,
                            StructuringElement inStrel,
                            OutOfBoundsStrategyFactory<T> inOutFactory)
```
- Method Detail
  - reset
```
public void reset()
```
  - isInit
```
public boolean isInit()
```
  - getStrel
```
public StructuringElement getStrel()
```
  - getList
```
protected LinkedList<T> getList()
```
  - getLastPosition
```
public int[] getLastPosition()
```
  - close
```
public void close()
```
    Overrides:
    
    close in class ROIAlgorithm<T extends RealType<T>,T extends RealType<T>>
  - checkInput
```
public boolean checkInput()
```
    Specified by:
    
    checkInput in interface Algorithm
    
    Overrides:
    
    checkInput in class ROIAlgorithm<T extends RealType<T>,T extends RealType<T>>
  - patchOperation
```
protected boolean patchOperation(int[] position,
                                 RegionOfInterestCursor<T> cursor)
```
    Description copied from class: ROIAlgorithm
    
    Performs this algorithm's operation on the patch represented by a RegionOfInterestCursor
    
    Specified by:
    
    patchOperation in class ROIAlgorithm<T extends RealType<T>,T extends RealType<T>>
    
    Parameters:
    
    position - the position in the input image at the center of the patch represented by the RegionOfInterestCursor
    
    cursor - a RegionOfInterestCursor that iterates over the given patch-of-interest
    
    Returns:
    
    true if the operation on the given patch was successful, false otherwise. If false is returned by this method, process() will abort.
  - statsOp
```
protected abstract void statsOp(LocalizableByDimCursor<T> cursor)
```
    Perform the order statistic operation, then set the value of the type of the given cursor.
    
    Parameters:
    
    cursor -

Class StatisticalOperation<T extends RealType<T>>

Nested Class Summary

Constructor Summary

Method Summary

Methods inherited from class mpicbg.imglib.algorithm.ROIAlgorithm

Methods inherited from class java.lang.Object

Constructor Detail

StatisticalOperation

StatisticalOperation

Method Detail

reset

isInit

getStrel

getList

getLastPosition

close

checkInput

patchOperation

statsOp