Constructor Detail

• ElasticLayerAlignment

  public ElasticLayerAlignment()

Method Detail

• exec

  public final void exec(ElasticLayerAlignment.Param param,
                         Project project,
                         List<Layer> layerRange,
                         Set<Layer> fixedLayers,
                         Set<Layer> emptyLayers,
                         Rectangle box,
                         boolean propagateTransformBefore,
                         boolean propagateTransformAfter,
                         Filter<Patch> filter)
                  throws Exception

  Throws:

  Exception

• makeTPS

  protected static final ThinPlateSplineTransform makeTPS(Set<PointMatch> matches)
                                                   throws Exception

  Throws:

  Exception

• applyTransformToLayer

  protected static final void applyTransformToLayer(Layer layer,
                                                    CoordinateTransform mlt,
                                                    Filter<Patch> filter)
                                             throws InterruptedException

  Throws:

  InterruptedException

• exec

  public final void exec(Project project,
                         List<Layer> layerRange,
                         Set<Layer> fixedLayers,
                         boolean propagateTransformBefore,
                         boolean propagateTransformAfter,
                         Rectangle fov,
                         Filter<Patch> filter)
                  throws Exception

  Stateful. Changing the parameters of this instance. Do not use in parallel.

  Parameters:

  layerRange -

  fixedLayers -

  propagateTransformBefore -

  propagateTransformAfter -

  fov -

  filter -

  Throws:

  Exception

• exec

  public final void exec(LayerSet layerSet,
                         int firstIn,
                         int lastIn,
                         int ref,
                         boolean propagateTransformBefore,
                         boolean propagateTransformAfter,
                         Rectangle fov,
                         Filter<Patch> filter)
                  throws Exception

  Stateful. Changing the parameters of this instance. Do not use in parallel.

  Parameters:

  layerSet -

  firstIn -

  lastIn -

  propagateTransformBefore -

  propagateTransformAfter -

  fov -

  filter -

  Throws:

  Exception

• exec

  public final void exec(LayerSet layerSet,
                         int firstIn,
                         int lastIn,
                         int ref,
                         boolean propagateTransform,
                         Rectangle fov,
                         Filter<Patch> filter)
                  throws Exception

  Stateful. Changing the parameters of this instance. Do not use in parallel.

  Parameters:

  layerSet -

  firstIn -

  lastIn -

  ref -

  propagateTransform -

  fov -

  filter -

  Throws:

  Exception

• exec

  public final void exec(LayerSet layerSet,
                         int firstIn,
                         int lastIn,
                         int ref1,
                         int ref2,
                         boolean propagateTransformBefore,
                         boolean propagateTransformAfter,
                         Rectangle fov,
                         Filter<Patch> filter)
                  throws Exception

  Stateful. Changing the parameters of this instance. Do not use in parallel.

  Parameters:

  layerSet -

  firstIn -

  lastIn -

  ref1 -

  ref2 -

  propagateTransformAfter -

  fov -

  filter -

  Throws:

  Exception