ThresholdDetector (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- fiji.plugin.trackmate.detection.ThresholdDetector<T>

All Implemented Interfaces:: SpotDetector<T>, Algorithm, Benchmark, MultiThreaded, OutputAlgorithm<List<Spot>>

public class ThresholdDetector<T extends RealType<T> & NativeType<T>>
extends Object
implements SpotDetector<T>, MultiThreaded

Field Summary

Fields
Modifier and Type	Field and Description
`protected String`	`baseErrorMessage`
`protected double[]`	`calibration`
`protected String`	`errorMessage`
`protected RandomAccessible<T>`	`input` The mask.
`protected Interval`	`interval`
`protected int`	`numThreads`
`protected long`	`processingTime` The processing time in ms.
`protected boolean`	`simplify` If `true`, the contours will be smoothed and simplified.
`protected List<Spot>`	`spots` The list of `Spot` that will be populated by this detector.
`protected double`	`threshold`

Constructor Summary

Constructors
Constructor and Description
`ThresholdDetector(RandomAccessible<T> input, Interval interval, double[] calibration, double threshold, boolean simplify)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`boolean`	`checkInput()`
`String`	`getErrorMessage()`
`int`	`getNumThreads()`
`long`	`getProcessingTime()`
`List<Spot>`	`getResult()`
`boolean`	`process()`
`void`	`setNumThreads()`
`void`	`setNumThreads(int numThreads)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

input

protected RandomAccessible<T extends RealType<T> & NativeType<T>> input

The mask.

baseErrorMessage
```
protected String baseErrorMessage
```

errorMessage
```
protected String errorMessage
```

spots
```
protected List<Spot> spots
```
The list of Spot that will be populated by this detector.

processingTime
```
protected long processingTime
```
The processing time in ms.

numThreads
```
protected int numThreads
```

interval
```
protected final Interval interval
```

calibration
```
protected final double[] calibration
```

threshold
```
protected final double threshold
```

simplify
```
protected final boolean simplify
```
If true, the contours will be smoothed and simplified.

Constructor Detail

ThresholdDetector

public ThresholdDetector(RandomAccessible<T> input,
                         Interval interval,
                         double[] calibration,
                         double threshold,
                         boolean simplify)

Method Detail
- getResult
```
public List<Spot> getResult()
```
  Specified by:
  
  getResult in interface OutputAlgorithm<List<Spot>>
- checkInput
```
public boolean checkInput()
```
  Specified by:
  
  checkInput in interface Algorithm
- process
```
public boolean process()
```
  Specified by:
  
  process in interface Algorithm
- getErrorMessage
```
public String getErrorMessage()
```
  Specified by:
  
  getErrorMessage in interface Algorithm
- getProcessingTime
```
public long getProcessingTime()
```
  Specified by:
  
  getProcessingTime in interface Benchmark
- setNumThreads
```
public void setNumThreads()
```
  Specified by:
  
  setNumThreads in interface MultiThreaded
- setNumThreads
```
public void setNumThreads(int numThreads)
```
  Specified by:
  
  setNumThreads in interface MultiThreaded
- getNumThreads
```
public int getNumThreads()
```
  Specified by:
  
  getNumThreads in interface MultiThreaded

Class ThresholdDetector<T extends RealType<T> & NativeType<T>>

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

input

baseErrorMessage

errorMessage

spots

processingTime

numThreads

interval

calibration

threshold

simplify

Constructor Detail

ThresholdDetector

Method Detail

getResult

checkInput

process

getErrorMessage

getProcessingTime

setNumThreads

setNumThreads

getNumThreads