public class CellVoyagerDataExporter extends Object
| Modifier and Type | Class and Description |
|---|---|
static class |
CellVoyagerDataExporter.ChannelInfo |
| Constructor and Description |
|---|
CellVoyagerDataExporter(File measurementSettingFile,
File imageIndexFile)
Creates a new exporter that will browse the specified measurement folder
to build the data to export.
|
| Modifier and Type | Method and Description |
|---|---|
void |
export(File seqFile,
File hdf5File,
int[][] resolutions,
int[][] chunks,
ProgressWriter progressWriter)
Export the target dataset to a xml/hd5 file couple.
|
double |
readFrameInterval() |
List<CellVoyagerDataExporter.ChannelInfo> |
readInfo() |
TimePoints |
readTimePoints() |
public CellVoyagerDataExporter(File measurementSettingFile, File imageIndexFile)
measurementSettingFile - the CellVoyager measurement file to parse. It must be a XML
file containing the information on the acquisition to export.
This file is typically named
MeasurementSetting.xmlimageIndexFile - the CellVoyager image index file. This XML file contains the
path to and information on each individual image needed to
rebuild the whole dataset. The file is generally in the same
folder that og the measurement setting file and named
ImageIndex.xml.public List<CellVoyagerDataExporter.ChannelInfo> readInfo()
public TimePoints readTimePoints()
public double readFrameInterval()
public void export(File seqFile, File hdf5File, int[][] resolutions, int[][] chunks, ProgressWriter progressWriter)
seqFile - the path to the target XML file to write.hdf5File - the path to the target HDF5 file to write.resolutions - the resolution definition for each level.chunks - the chunck size definition for each level.progressWriter - a ProgressWriter that will advance from 0 to 1 while
this method executes.Copyright © 2015–2021 Fiji. All rights reserved.