Resave_TIFF (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- spim.fiji.plugin.resave.Resave_TIFF

All Implemented Interfaces:: ij.plugin.PlugIn

public class Resave_TIFF
extends Object
implements ij.plugin.PlugIn

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

static class Resave_TIFF.Parameters

Nested Classes
Modifier and Type	Class and Description
`static class`	`Resave_TIFF.Parameters`

Field Summary

Fields
Modifier and Type Field and Description

static boolean defaultCompress

static int defaultContainer

static String defaultPath

Fields
Modifier and Type	Field and Description
`static boolean`	`defaultCompress`
`static int`	`defaultContainer`
`static String`	`defaultPath`

Constructor Summary

Constructors
Constructor and Description

Resave_TIFF()

Constructors
Constructor and Description
`Resave_TIFF()`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`static SpimData2`	`assemblePartialSpimData2(SpimData2 spimData, List<ViewId> viewIds, File basePath, List<String> filesToCopy)` Assembles a new SpimData2 based on the subset of timepoints and viewsetups as selected by the user.
`static void`	`copyFolder(File src, File dest, List<String> filesToCopy)`
`static void`	`copyInterestPoints(File srcBase, File destBase, List<String> filesToCopy)`
`static Pair<SpimData2,List<String>>`	`createXMLObject(SpimData2 spimData, List<ViewId> viewIds, Resave_TIFF.Parameters params)`
`static Resave_TIFF.Parameters`	`getParameters()`
`static String`	`listAllTimePoints(List<TimePoint> timePointsToProcess)`
`static void`	`main(String[] args)`
`void`	`run(String arg0)`
`static void`	`writeTIFF(SpimData spimData, List<ViewId> viewIds, String path, boolean compress, ProgressWriter progressWriter)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

defaultPath
```
public static String defaultPath
```

defaultContainer
```
public static int defaultContainer
```

defaultCompress
```
public static boolean defaultCompress
```

Constructor Detail
- Resave_TIFF
```
public Resave_TIFF()
```

Method Detail

main

public static void main(String[] args)

run
```
public void run(String arg0)
```
Specified by:

run in interface ij.plugin.PlugIn

copyInterestPoints

public static void copyInterestPoints(File srcBase,
                                      File destBase,
                                      List<String> filesToCopy)

getParameters

public static Resave_TIFF.Parameters getParameters()

writeTIFF

public static void writeTIFF(SpimData spimData,
                             List<ViewId> viewIds,
                             String path,
                             boolean compress,
                             ProgressWriter progressWriter)

createXMLObject

public static Pair<SpimData2,List<String>> createXMLObject(SpimData2 spimData,
                                                           List<ViewId> viewIds,
                                                           Resave_TIFF.Parameters params)

listAllTimePoints

public static String listAllTimePoints(List<TimePoint> timePointsToProcess)

copyFolder

public static void copyFolder(File src,
                              File dest,
                              List<String> filesToCopy)
                       throws IOException

Throws:: IOException

assemblePartialSpimData2

public static SpimData2 assemblePartialSpimData2(SpimData2 spimData,
                                                 List<ViewId> viewIds,
                                                 File basePath,
                                                 List<String> filesToCopy)

Assembles a new SpimData2 based on the subset of timepoints and viewsetups as selected by the user. The imgloader is still not set here. It also fills up a list of filesToCopy from the interestpoints directory if it is not null.

Parameters:: filesToCopy -
Returns:

Class Resave_TIFF

Nested Class Summary

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

defaultPath

defaultContainer

defaultCompress

Constructor Detail

Resave_TIFF