public class ImageParser2D extends ImageParser
| Modifier and Type | Field and Description |
|---|---|
int |
MAX_N_SPANS |
static int |
MEAN
Flag for integration of repeated measures: average
|
static int |
MEDIAN
Flag for integration of repeated measures: median
|
static int |
MODE
Flag for integration of repeated measures: mode
|
cal, center, channel, frame, imp, lowerT, maxX, maxY, maxZ, minX, minY, minZ, profile, properties, radii, running, start, statusService, upperT, voxelSize, xc, yc, zcHEMI_EAST, HEMI_NONE, HEMI_NORTH, HEMI_SOUTH, HEMI_WEST, INTG_MEAN, INTG_MEDIAN, INTG_MODE, KEY_2D3D, KEY_CALIBRATION, KEY_CENTER, KEY_CHANNEL_POS, KEY_FRAME_POS, KEY_HEMISHELLS, KEY_ID, KEY_NSAMPLES, KEY_NSAMPLES_INTG, KEY_SLICE_POS, KEY_SOURCE, KEY_THRESHOLD_RANGE, SRC_IMG, SRC_TABLE, SRC_TRACES, UNSET| Constructor and Description |
|---|
ImageParser2D(ij.ImagePlus imp) |
ImageParser2D(ij.ImagePlus imp,
Context context) |
| Modifier and Type | Method and Description |
|---|---|
protected int[] |
getPixels(int[][] points) |
protected Set<ShollPoint> |
groupPositions(int[][] points) |
void |
parse() |
void |
setCenter(double x,
double y) |
void |
setCenterPx(int x,
int y) |
void |
setPosition(int channel,
int slice,
int frame) |
void |
setRadii(double startRadius,
double step,
double endRadius) |
void |
setRadii(double startRadius,
double step,
double endRadius,
int span,
int integrationFlag) |
void |
setRadiiSpan(int nSamples,
int integrationFlag) |
protected Set<ShollPoint> |
targetGroupsPositions(int[] pixels,
int[][] rawpoints) |
protected boolean |
withinBoundsAndThreshold(int x,
int y) |
checkUnsetFields, checkUnsetFields, clearStatus, getCircumferencePoints, getIsotropicVoxelSize, getMask, getMaskProcessor, getProfile, isRetrieveIntDensitiesSet, maxPossibleRadius, reset, run, setCenter, setCenterFromROI, setCenterPx, setHemiShells, setPosition, setRadii, setRetrieveIntDensities, setThreshold, successful, terminate, withinBounds, withinThreshold, withinXYbounds, withinZboundscancel, getCancelReason, isCanceledcontext, getContextclone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitsetContextpublic static final int MEAN
public static final int MEDIAN
public static final int MODE
public final int MAX_N_SPANS
public ImageParser2D(ij.ImagePlus imp)
public ImageParser2D(ij.ImagePlus imp,
Context context)
public void setCenterPx(int x,
int y)
public void setCenter(double x,
double y)
public void setRadii(double startRadius,
double step,
double endRadius)
setRadii in class ImageParserpublic void setRadii(double startRadius,
double step,
double endRadius,
int span,
int integrationFlag)
public void setRadiiSpan(int nSamples,
int integrationFlag)
public void parse()
parse in interface Parserparse in class ImageParserprotected Set<ShollPoint> targetGroupsPositions(int[] pixels, int[][] rawpoints)
protected Set<ShollPoint> groupPositions(int[][] points)
protected int[] getPixels(int[][] points)
protected boolean withinBoundsAndThreshold(int x,
int y)
public void setPosition(int channel,
int slice,
int frame)
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