BigWarpViewerPanel (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - javax.swing.JComponent
    - - javax.swing.JPanel
      - bdv.viewer.ViewerPanel
        
        bdv.viewer.BigWarpViewerPanel

All Implemented Interfaces:

OverlayRenderer, PainterThread.Paintable, RequestRepaint, ViewerStateChangeListener, ImageObserver, MenuContainer, Serializable, Accessible
```
public class BigWarpViewerPanel
extends ViewerPanel
```
See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class bdv.viewer.ViewerPanel
  ViewerPanel.AlignPlane, ViewerPanel.MouseCoordinateListener, ViewerPanel.RenderThreadFactory
- Nested classes/interfaces inherited from class javax.swing.JPanel
  JPanel.AccessibleJPanel
- Nested classes/interfaces inherited from class javax.swing.JComponent
  JComponent.AccessibleJComponent
- Nested classes/interfaces inherited from class java.awt.Container
  Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field and Description
`protected boolean`	`boxOverlayVisible`
`protected BigWarpDragOverlay`	`dragOverlay`
`protected boolean`	`isMoving`
`protected MessageOverlayAnimator`	`message`
`static int`	`MOVING_GROUP_INDEX`
`protected int[]`	`movingSourceIndexList`
`protected int`	`ndims`
`protected ArrayList<AffineTransform3D>`	`orthoTransforms`
`protected BigWarpOverlay`	`overlay`
`static double`	`R2o2`
`protected List<SourceAndConverter<?>>`	`sources`
`static int`	`TARGET_GROUP_INDEX`
`protected int[]`	`targetSourceIndexList`
`protected boolean`	`textOverlayVisible`
`protected boolean`	`transformEnabled`
`protected boolean`	`updateOnDrag`
`protected BigWarpViewerSettings`	`viewerSettings`

Fields inherited from class javax.swing.JComponent
listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component
accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors
Constructor and Description
`BigWarpViewerPanel(List<SourceAndConverter<?>> sources, BigWarpViewerSettings viewerSettings, CacheControl cache, BigWarpViewerOptions optional, boolean isMoving, int[] movingSourceIndexList, int[] targetSourceIndexList)`
`BigWarpViewerPanel(List<SourceAndConverter<?>> sources, BigWarpViewerSettings viewerSettings, CacheControl cache, boolean isMoving, int[] movingSourceIndexList, int[] targetSourceIndexList)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`addDragOverlay(BigWarpDragOverlay dragOverlay)`
`void`	`addOverlay(BigWarpOverlay overlay)`
`void`	`align(ViewerPanel.AlignPlane plane)` Align the XY, ZY, or XZ plane of the local coordinate system of the currently active source with the viewer coordinate system.
`void`	`animateTransformation(AffineTransform3D destinationXfm)`
`void`	`animateTransformation(AffineTransform3D destinationXfm, int millis)`
`void`	`displayViewerTransforms()`
`boolean`	`doUpdateOnDrag()`
`void`	`drawOverlays(Graphics g)` Render overlays.
`BigWarpDragOverlay`	`getDragOverlay()`
`boolean`	`getIsMoving()`
`ViewerOptions.Values`	`getOptionValues()`
`BigWarpOverlay`	`getOverlay()`
`BigWarpViewerSettings`	`getSettings()`
`boolean`	`getTransformEnabled()`
`boolean`	`isInFixedImageSpace()`
`void`	`precomputeRotations2d(AffineTransform3D initialViewTransform)`
`void`	`rotateView2d(boolean isClockwise)`
`void`	`setHoveredIndex(int index)`
`void`	`setNumDim(int ndim)`
`void`	`setTransformEnabled(boolean enabled)`
`void`	`setUpdateOnDrag(boolean updateOnDrag)`
`void`	`showMessage(String msg)` Display the specified message in a text overlay for a short time.
`void`	`toggleBoxOverlayVisible()`
`void`	`toggleTextOverlayVisible()`
`void`	`toggleUpdateOnDrag()`
`int`	`updateGrouping()` Makes the first group contain all the moving images and the second group contain all the fixed images

Methods inherited from class bdv.viewer.ViewerPanel
addGroup, addInterpolationModeListener, addOverlayAnimator, addRenderTransformListener, addRenderTransformListener, addSource, addSources, addTimePointListener, addTimePointListener, addTransformListener, addTransformListener, displayToGlobalCoordinates, displayToGlobalCoordinates, displayToGlobalCoordinates, getDisplay, getGlobalMouseCoordinates, getMouseCoordinates, getSourceInfoOverlayRenderer, getState, getTransformEventHandler, getVisibilityAndGrouping, nextTimePoint, paint, previousTimePoint, removeAllSources, removeGroup, removeInterpolationModeListener, removeSource, removeSources, removeTimePointListener, removeTransformListener, renderTransformListeners, requestFocusInWindow, requestRepaint, requestRepaint, setCanvasSize, setCurrentViewerTransform, setDisplayMode, setInterpolation, setNumTimepoints, setTimepoint, setTransformAnimator, state, stateFromXml, stateToXml, stop, toggleInterpolation, viewerStateChanged

Methods inherited from class javax.swing.JPanel
getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

MOVING_GROUP_INDEX
```
public static final int MOVING_GROUP_INDEX
```
See Also:

Constant Field Values

TARGET_GROUP_INDEX
```
public static final int TARGET_GROUP_INDEX
```
See Also:

Constant Field Values

sources

protected List<SourceAndConverter<?>> sources

viewerSettings

protected BigWarpViewerSettings viewerSettings

overlay
```
protected BigWarpOverlay overlay
```

dragOverlay

protected BigWarpDragOverlay dragOverlay

message

protected final MessageOverlayAnimator message

isMoving
```
protected boolean isMoving
```

updateOnDrag
```
protected boolean updateOnDrag
```

transformEnabled
```
protected boolean transformEnabled
```

ndims
```
protected int ndims
```

movingSourceIndexList

protected final int[] movingSourceIndexList

targetSourceIndexList

protected final int[] targetSourceIndexList

boxOverlayVisible
```
protected boolean boxOverlayVisible
```

textOverlayVisible
```
protected boolean textOverlayVisible
```

orthoTransforms

protected ArrayList<AffineTransform3D> orthoTransforms

R2o2
```
public static final double R2o2
```

Constructor Detail

BigWarpViewerPanel

public BigWarpViewerPanel(List<SourceAndConverter<?>> sources,
                          BigWarpViewerSettings viewerSettings,
                          CacheControl cache,
                          boolean isMoving,
                          int[] movingSourceIndexList,
                          int[] targetSourceIndexList)

BigWarpViewerPanel

public BigWarpViewerPanel(List<SourceAndConverter<?>> sources,
                          BigWarpViewerSettings viewerSettings,
                          CacheControl cache,
                          BigWarpViewerOptions optional,
                          boolean isMoving,
                          int[] movingSourceIndexList,
                          int[] targetSourceIndexList)

Method Detail

getOptionValues
```
public ViewerOptions.Values getOptionValues()
```
Overrides:

getOptionValues in class ViewerPanel

precomputeRotations2d

public void precomputeRotations2d(AffineTransform3D initialViewTransform)

toggleTextOverlayVisible

public void toggleTextOverlayVisible()

toggleBoxOverlayVisible
```
public void toggleBoxOverlayVisible()
```

showMessage
```
public void showMessage(String msg)
```
Description copied from class: ViewerPanel

Display the specified message in a text overlay for a short time.

Overrides:

showMessage in class ViewerPanel

Parameters:

msg - String to display. Should be just one line of text.

setHoveredIndex

public void setHoveredIndex(int index)

updateGrouping
```
public int updateGrouping()
```
Makes the first group contain all the moving images and the second group contain all the fixed images

Returns:

the number sources in the moving group

isInFixedImageSpace
```
public boolean isInFixedImageSpace()
```

doUpdateOnDrag
```
public boolean doUpdateOnDrag()
```

setUpdateOnDrag

public void setUpdateOnDrag(boolean updateOnDrag)

toggleUpdateOnDrag
```
public void toggleUpdateOnDrag()
```

addOverlay

public void addOverlay(BigWarpOverlay overlay)

getOverlay
```
public BigWarpOverlay getOverlay()
```

addDragOverlay

public void addDragOverlay(BigWarpDragOverlay dragOverlay)

getDragOverlay

public BigWarpDragOverlay getDragOverlay()

getIsMoving
```
public boolean getIsMoving()
```

setNumDim
```
public void setNumDim(int ndim)
```

drawOverlays
```
public void drawOverlays(Graphics g)
```
Description copied from interface: OverlayRenderer

Render overlays.

Specified by:

drawOverlays in interface OverlayRenderer

Overrides:

drawOverlays in class ViewerPanel

getSettings

public BigWarpViewerSettings getSettings()

displayViewerTransforms
```
public void displayViewerTransforms()
```

rotateView2d

public void rotateView2d(boolean isClockwise)

align
```
public void align(ViewerPanel.AlignPlane plane)
```
Description copied from class: ViewerPanel

Align the XY, ZY, or XZ plane of the local coordinate system of the currently active source with the viewer coordinate system.

Overrides:

align in class ViewerPanel

Parameters:

plane - to which plane to align.

animateTransformation

public void animateTransformation(AffineTransform3D destinationXfm,
                                  int millis)

animateTransformation

public void animateTransformation(AffineTransform3D destinationXfm)

setTransformEnabled

public void setTransformEnabled(boolean enabled)

getTransformEnabled
```
public boolean getTransformEnabled()
```

Class BigWarpViewerPanel

Nested Class Summary

Nested classes/interfaces inherited from class bdv.viewer.ViewerPanel

Nested classes/interfaces inherited from class javax.swing.JPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class bdv.viewer.ViewerPanel

Fields inherited from class javax.swing.JComponent

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Constructor Summary

Method Summary

Methods inherited from class bdv.viewer.ViewerPanel

Methods inherited from class javax.swing.JPanel

Methods inherited from class javax.swing.JComponent

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Field Detail

MOVING_GROUP_INDEX

TARGET_GROUP_INDEX

sources

viewerSettings

overlay

dragOverlay

message

isMoving

updateOnDrag

transformEnabled

ndims

movingSourceIndexList

targetSourceIndexList

boxOverlayVisible

textOverlayVisible

orthoTransforms

R2o2

Constructor Detail

BigWarpViewerPanel

BigWarpViewerPanel

Method Detail

getOptionValues

precomputeRotations2d

toggleTextOverlayVisible

toggleBoxOverlayVisible

showMessage

setHoveredIndex

updateGrouping

isInFixedImageSpace

doUpdateOnDrag

setUpdateOnDrag

toggleUpdateOnDrag

addOverlay

getOverlay

addDragOverlay

getDragOverlay

getIsMoving

setNumDim

drawOverlays

getSettings

displayViewerTransforms

rotateView2d

align

animateTransformation

animateTransformation

setTransformEnabled

getTransformEnabled