CMTKTransformation (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- util.CMTKTransformation

public class CMTKTransformation
extends Object

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

static class CMTKTransformation.Inverse

Nested Classes
Modifier and Type	Class and Description
`static class`	`CMTKTransformation.Inverse`

Constructor Summary

Constructors
Modifier	Constructor and Description
	`CMTKTransformation()`
`protected`	`CMTKTransformation(int dimsx, int dimsy, int dimsz, double domainx, double domainy, double domainz, double originx, double originy, double originz, double[][] coeffs)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`double`	`bSpline(int l, double u)`
`static double`	`degToRad(double d)`
`CMTKTransformation.Inverse`	`inverse(ij.ImagePlus template, ij.ImagePlus model)`
`static FastMatrix`	`parseTypedStreamAffine(File f)`
`static CMTKTransformation`	`parseTypedStreamWarp(File f)`
`boolean`	`precalculatedInverseExists()`
`void`	`setOriginalFile(File originalFile)`
`ij.ImagePlus`	`transform(ij.ImagePlus templateImage, ij.ImagePlus modelImage)`
`void`	`transformPoint(double x, double y, double z, double[] result)`
`byte`	`trilinearInterpolateByte(double image_x, double image_y, double image_z, int width, int height, int depth, byte[][] v)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CMTKTransformation
```
public CMTKTransformation()
```

CMTKTransformation

protected CMTKTransformation(int dimsx,
                             int dimsy,
                             int dimsz,
                             double domainx,
                             double domainy,
                             double domainz,
                             double originx,
                             double originy,
                             double originz,
                             double[][] coeffs)

Method Detail

setOriginalFile

public void setOriginalFile(File originalFile)

degToRad

public static double degToRad(double d)

trilinearInterpolateByte

public byte trilinearInterpolateByte(double image_x,
                                     double image_y,
                                     double image_z,
                                     int width,
                                     int height,
                                     int depth,
                                     byte[][] v)

transform

public ij.ImagePlus transform(ij.ImagePlus templateImage,
                              ij.ImagePlus modelImage)

bSpline

public double bSpline(int l,
                      double u)

transformPoint

public void transformPoint(double x,
                           double y,
                           double z,
                           double[] result)

parseTypedStreamAffine

public static FastMatrix parseTypedStreamAffine(File f)

parseTypedStreamWarp

public static CMTKTransformation parseTypedStreamWarp(File f)

precalculatedInverseExists

public boolean precalculatedInverseExists()

inverse

public CMTKTransformation.Inverse inverse(ij.ImagePlus template,
                                          ij.ImagePlus model)

Class CMTKTransformation

Nested Class Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

CMTKTransformation

CMTKTransformation

Method Detail

setOriginalFile

degToRad

trilinearInterpolateByte

transform

bSpline

transformPoint

parseTypedStreamAffine

parseTypedStreamWarp

precalculatedInverseExists

inverse