Constructor Detail

• MinFilterThreshold

  public MinFilterThreshold(SpimData2 spimData,
                            List<ViewId> viewIdsToProcess,
                            Channel channel,
                            TimePoint timepoint,
                            BoundingBoxGUI bb,
                            double background,
                            int discardedObjectSize,
                            boolean loadSequentially,
                            boolean displaySegmentationImage)

Method Detail

• getMin

  public int[] getMin()

• getMax

  public int[] getMax()

• run

  public boolean run()

• computeBoundingBox

  public static final <T extends RealType<T>> boolean computeBoundingBox(Img<T> img,
                                                                         double threshold,
                                                                         int[] min,
                                                                         int[] max)

• computeLazyMinFilter

  public static final <T extends RealType<T>> Img<T> computeLazyMinFilter(Img<T> tmp1,
                                                                          int radius)

  By lazy I mean I was lazy to use a second image, one could of course implement it on a n-d line by line basis @TODO

  Parameters:

  tmp1 - - input image (overwritten, not necessarily the result, depends if number of dimensions is even or odd)

  radius - - the integer radius of the min filter

• main

  public static void main(String[] args)