MatchIntensities (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- org.janelia.intensity.MatchIntensities

All Implemented Interfaces:

TPlugIn
```
public class MatchIntensities
extends Object
implements TPlugIn
```
Author:

Stephan Saalfeld saalfelds@janelia.hhmi.org, Philipp Hanslovsky

Field Summary

Fields
Modifier and Type	Field and Description
`protected static int`	`iterations`
`protected static double`	`lambda1`
`protected static double`	`lambda2`
`protected LayerSet`	`layerset`
`protected static double`	`neighborWeight`
`protected static int`	`numCoefficients`
`protected static int`	`radius`
`protected static double`	`scale`

Constructor Summary

Constructors
Constructor and Description

MatchIntensities()

Constructors
Constructor and Description
`MatchIntensities()`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`boolean`	`applies(Object ob)` Returns true if this plugin can be applied to an Object like @param ob.
`protected static <T extends Model<T> & Affine1D<T>> HashMap<Patch,ArrayList<Tile<T>>>`	`generateCoefficientsTiles(Collection<Patch> patches, T template, int nCoefficients)`
`protected static void`	`identityConnect(Tile<?> t1, Tile<?> t2, double weight)`
`Object`	`invoke(Object... params)` Run the plugin directly.
`static void`	`main(String... args)`
`<M extends Model<M> & Affine1D<M>> void`	`run(List<Layer> layers, int radius, double scale, int numCoefficients, double lambda1, double lambda2, double neighborWeight, Rectangle roi)`
`boolean`	`setup(Object... params)` Setup with optional parameters (may be null).

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

layerset
```
protected LayerSet layerset
```

numCoefficients
```
protected static int numCoefficients
```

lambda1
```
protected static double lambda1
```

lambda2
```
protected static double lambda2
```

neighborWeight
```
protected static double neighborWeight
```

radius
```
protected static int radius
```

iterations
```
protected static int iterations
```

scale
```
protected static double scale
```

Constructor Detail
- MatchIntensities
```
public MatchIntensities()
```

Method Detail

setup
```
public boolean setup(Object... params)
```
Description copied from interface: TPlugIn

Setup with optional parameters (may be null). Returns true of the setup was successful or not interrupted (like by clicking cancel on a dialog).

Specified by:

setup in interface TPlugIn

generateCoefficientsTiles

protected static final <T extends Model<T> & Affine1D<T>> HashMap<Patch,ArrayList<Tile<T>>> generateCoefficientsTiles(Collection<Patch> patches,
                                                                                                                      T template,
                                                                                                                      int nCoefficients)

identityConnect

protected static final void identityConnect(Tile<?> t1,
                                            Tile<?> t2,
                                            double weight)

invoke
```
public Object invoke(Object... params)
```
Description copied from interface: TPlugIn

Run the plugin directly.

Specified by:

invoke in interface TPlugIn

applies
```
public boolean applies(Object ob)
```
Description copied from interface: TPlugIn

Returns true if this plugin can be applied to an Object like @param ob. This may or may not be a Displayable object.

Specified by:

applies in interface TPlugIn

run

public <M extends Model<M> & Affine1D<M>> void run(List<Layer> layers,
                                                   int radius,
                                                   double scale,
                                                   int numCoefficients,
                                                   double lambda1,
                                                   double lambda2,
                                                   double neighborWeight,
                                                   Rectangle roi)
                                            throws InterruptedException,
                                                   ExecutionException

Parameters:: layers -; radius -; scale -; numCoefficients -; lambda1 -; lambda2 -; neighborWeight -; roi -
Throws:: InterruptedException; ExecutionException

main

public static final void main(String... args)

Class MatchIntensities

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

layerset

numCoefficients

lambda1

lambda2

neighborWeight

radius

iterations

scale

Constructor Detail

MatchIntensities

Method Detail

setup

generateCoefficientsTiles

identityConnect

invoke

applies

run

main