Field Detail

• makeAllPSFSameSize

  public static boolean makeAllPSFSameSize

• psfSize

  public static int psfSize

• isotropic

  public static boolean isotropic

• psfSize3d

  public static int[] psfSize3d

• subtractBackground

  public static float subtractBackground

• defaultPSFFileField

  public static ArrayList<String> defaultPSFFileField

• defaultOnePSFForAll

  public static boolean defaultOnePSFForAll

• defaultTransformPSFs

  public static boolean defaultTransformPSFs

• defaultExtractPSF

  public static int defaultExtractPSF

• defaultLoadImagesSequentially

  public static boolean defaultLoadImagesSequentially

• defaultOutputType

  public static int defaultOutputType

• defaultOSEMspeedupIndex

  public static int defaultOSEMspeedupIndex

• defaultOSEMspeedup

  public static double defaultOSEMspeedup

• defaultNumIterations

  public static int defaultNumIterations

• defaultUseTikhonovRegularization

  public static boolean defaultUseTikhonovRegularization

• defaultLambda

  public static double defaultLambda

• defaultDisplayPSF

  public static int defaultDisplayPSF

• defaultDebugMode

  public static boolean defaultDebugMode

• defaultDebugInterval

  public static int defaultDebugInterval

• defaultIterationType

  public static int defaultIterationType

• defaultContainerInput

  public static int defaultContainerInput

• defaultContainerProcess

  public static int defaultContainerProcess

• defaultComputationIndex

  public static int defaultComputationIndex

• defaultBlockSizeIndex

  public static int defaultBlockSizeIndex

• defaultBlockSizeX

  public static int defaultBlockSizeX

• defaultBlockSizeY

  public static int defaultBlockSizeY

• defaultBlockSizeZ

  public static int defaultBlockSizeZ

• iterationTypeString

  public static String[] iterationTypeString

• imglibContainer

  public static String[] imglibContainer

• computationOn

  public static String[] computationOn

• osemspeedupChoice

  public static String[] osemspeedupChoice

• extractPSFs

  public static String[] extractPSFs

• blocks

  public static String[] blocks

• displayPSF

  public static String[] displayPSF

• deviceChoice

  public static ArrayList<Boolean> deviceChoice

  0 ... n == index for i'th CUDA device n + 1 == CPU

• standardDevice

  public static int standardDevice

Constructor Detail

• Multi_View_Deconvolution

  public Multi_View_Deconvolution()

Method Detail

• run

  public void run(String arg0)

  Specified by:

  run in interface ij.plugin.PlugIn

• deconvolve

  public void deconvolve(ViewStructure viewStructure,
                         SPIMConfiguration conf,
                         int timePoint)

• getParameters

  protected SPIMConfiguration getParameters()