CustomMesh (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- org.scijava.java3d.SceneGraphObject
- - org.scijava.java3d.Node
  - - org.scijava.java3d.Leaf
    - - org.scijava.java3d.Shape3D
      - customnode.CustomMesh

Direct Known Subclasses:

CustomIndexedTriangleMesh, CustomLineMesh, CustomPointMesh, CustomTriangleMesh
```
public abstract class CustomMesh
extends Shape3D
```

Field Summary

Fields
Modifier and Type	Field and Description
`protected boolean`	`changed`
`protected Color3f`	`color`
`static Color3f`	`DEFAULT_COLOR`
`protected String`	`loadedFromFile`
`protected String`	`loadedFromName`
`protected List<Point3f>`	`mesh`
`protected boolean`	`shaded`
`protected float`	`transparency`

Fields inherited from class org.scijava.java3d.Shape3D
ALLOW_APPEARANCE_OVERRIDE_READ, ALLOW_APPEARANCE_OVERRIDE_WRITE, ALLOW_APPEARANCE_READ, ALLOW_APPEARANCE_WRITE, ALLOW_COLLISION_BOUNDS_READ, ALLOW_COLLISION_BOUNDS_WRITE, ALLOW_GEOMETRY_READ, ALLOW_GEOMETRY_WRITE

Fields inherited from class org.scijava.java3d.Node
ALLOW_AUTO_COMPUTE_BOUNDS_READ, ALLOW_AUTO_COMPUTE_BOUNDS_WRITE, ALLOW_BOUNDS_READ, ALLOW_BOUNDS_WRITE, ALLOW_COLLIDABLE_READ, ALLOW_COLLIDABLE_WRITE, ALLOW_LOCAL_TO_VWORLD_READ, ALLOW_LOCALE_READ, ALLOW_PARENT_READ, ALLOW_PICKABLE_READ, ALLOW_PICKABLE_WRITE, ENABLE_COLLISION_REPORTING, ENABLE_PICK_REPORTING

Constructor Summary

Constructors
Modifier	Constructor and Description
`protected`	`CustomMesh()`
`protected`	`CustomMesh(List<Point3f> mesh)`
`protected`	`CustomMesh(List<Point3f> mesh, Color3f color, float transp)`

Method Summary

All Methods Instance Methods Abstract Methods Concrete Methods
Modifier and Type	Method and Description
`protected void`	`addVertices(Point3f[] v)`
`protected void`	`addVerticesToGeometryArray(Point3f[] v)`
`protected void`	`addVerticesToGeometryStripArray(Point3f[] v)`
`void`	`calculateMinMaxCenterPoint(Point3f min, Point3f max, Point3f center)`
`void`	`clearDisplayedData()`
`protected Appearance`	`createAppearance()`
`protected abstract GeometryArray`	`createGeometry()`
`Color3f`	`getColor()`
`String`	`getFile()`
`List`	`getMesh()`
`String`	`getName()`
`float`	`getTransparency()`
`abstract float`	`getVolume()`
`boolean`	`hasChanged()`
`boolean`	`isShaded()`
`void`	`loadSurfaceColorsFromImage(ij.ImagePlus imp)`
`void`	`recalculateNormals(GeometryArray ga)`
`protected void`	`removeVertices(int[] indices)`
`void`	`restoreDisplayedData(String path, String name)`
`void`	`setColor(Color3f color)`
`void`	`setColor(int vtxIndex, Color3f color)`
`void`	`setColor(List<Color3f> color)`
`void`	`setCoordinate(int i, Point3f p)`
`void`	`setCoordinates(int[] indices, Point3f p)`
`void`	`setShaded(boolean b)`
`void`	`setTransparency(float transparency)`
`void`	`swapDisplayedData(String path, String name)`
`void`	`update()`
`int[]`	`vertexIndicesOfPoint(Point3f p)`

Methods inherited from class org.scijava.java3d.Shape3D
addGeometry, cloneNode, duplicateNode, getAllGeometries, getAppearance, getAppearanceOverrideEnable, getBounds, getCollisionBounds, getGeometry, getGeometry, indexOfGeometry, insertGeometry, intersect, intersect, intersect, numGeometries, removeAllGeometries, removeGeometry, removeGeometry, setAppearance, setAppearanceOverrideEnable, setCollisionBounds, setGeometry, setGeometry

Methods inherited from class org.scijava.java3d.Node
cloneTree, cloneTree, cloneTree, cloneTree, cloneTree, cloneTree, getBoundsAutoCompute, getCollidable, getLocale, getLocalToVworld, getLocalToVworld, getParent, getPickable, setBounds, setBoundsAutoCompute, setCollidable, setPickable

Methods inherited from class org.scijava.java3d.SceneGraphObject
clearCapability, clearCapabilityIsFrequent, duplicateSceneGraphObject, getCapability, getCapabilityIsFrequent, getUserData, isCompiled, isLive, setCapability, setCapabilityIsFrequent, setName, setUserData, toString, updateNodeReferences

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

DEFAULT_COLOR

public static final Color3f DEFAULT_COLOR

color
```
protected Color3f color
```

mesh
```
protected List<Point3f> mesh
```

transparency
```
protected float transparency
```

shaded
```
protected boolean shaded
```

loadedFromName
```
protected String loadedFromName
```

loadedFromFile
```
protected String loadedFromFile
```

changed
```
protected boolean changed
```

Constructor Detail

CustomMesh
```
protected CustomMesh()
```

CustomMesh

protected CustomMesh(List<Point3f> mesh)

CustomMesh

protected CustomMesh(List<Point3f> mesh,
                     Color3f color,
                     float transp)

Method Detail

getFile
```
public String getFile()
```

getName
```
public String getName()
```
Overrides:

getName in class SceneGraphObject

hasChanged
```
public boolean hasChanged()
```

update
```
public void update()
```

getMesh
```
public List getMesh()
```

getColor
```
public Color3f getColor()
```

getTransparency
```
public float getTransparency()
```

isShaded
```
public boolean isShaded()
```

setShaded
```
public void setShaded(boolean b)
```

calculateMinMaxCenterPoint

public void calculateMinMaxCenterPoint(Point3f min,
                                       Point3f max,
                                       Point3f center)

getVolume
```
public abstract float getVolume()
```

addVerticesToGeometryStripArray

protected void addVerticesToGeometryStripArray(Point3f[] v)

addVerticesToGeometryArray

protected void addVerticesToGeometryArray(Point3f[] v)

vertexIndicesOfPoint

public int[] vertexIndicesOfPoint(Point3f p)

setCoordinate

public void setCoordinate(int i,
                          Point3f p)

setCoordinates

public void setCoordinates(int[] indices,
                           Point3f p)

recalculateNormals

public void recalculateNormals(GeometryArray ga)

addVertices

protected void addVertices(Point3f[] v)

removeVertices

protected void removeVertices(int[] indices)

setColor
```
public void setColor(Color3f color)
```

setColor

public void setColor(List<Color3f> color)

setColor

public void setColor(int vtxIndex,
                     Color3f color)

loadSurfaceColorsFromImage

public void loadSurfaceColorsFromImage(ij.ImagePlus imp)

setTransparency

public void setTransparency(float transparency)

createAppearance

protected Appearance createAppearance()

restoreDisplayedData

public void restoreDisplayedData(String path,
                                 String name)

swapDisplayedData

public void swapDisplayedData(String path,
                              String name)

clearDisplayedData
```
public void clearDisplayedData()
```

createGeometry

protected abstract GeometryArray createGeometry()

Class CustomMesh

Field Summary

Fields inherited from class org.scijava.java3d.Shape3D

Fields inherited from class org.scijava.java3d.Node

Constructor Summary

Method Summary

Methods inherited from class org.scijava.java3d.Shape3D

Methods inherited from class org.scijava.java3d.Node

Methods inherited from class org.scijava.java3d.SceneGraphObject

Methods inherited from class java.lang.Object

Field Detail

DEFAULT_COLOR

color

mesh

transparency

shaded

loadedFromName

loadedFromFile

changed

Constructor Detail

CustomMesh

CustomMesh

CustomMesh

Method Detail

getFile

getName

hasChanged

update

getMesh

getColor

getTransparency

isShaded

setShaded

calculateMinMaxCenterPoint

getVolume

addVerticesToGeometryStripArray

addVerticesToGeometryArray

vertexIndicesOfPoint

setCoordinate

setCoordinates

recalculateNormals

addVertices

removeVertices

setColor

setColor

setColor

loadSurfaceColorsFromImage

setTransparency

createAppearance

restoreDisplayedData

swapDisplayedData

clearDisplayedData

createGeometry