LegacyStackImgLoader (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- spim.fiji.spimdata.imgloaders.AbstractImgLoader
- - spim.fiji.spimdata.imgloaders.AbstractImgFactoryImgLoader
  - - spim.fiji.spimdata.imgloaders.LegacyStackImgLoader

All Implemented Interfaces:

LegacyBasicImgLoader<UnsignedShortType>, LegacyImgLoader<UnsignedShortType>

Direct Known Subclasses:

LegacyStackImgLoaderIJ, LegacyStackImgLoaderLOCI
```
public abstract class LegacyStackImgLoader
extends AbstractImgFactoryImgLoader
```

Field Summary

Fields
Modifier and Type	Field and Description
`protected String`	`fileNamePattern`
`protected int`	`layoutAngles`
`protected int`	`layoutChannels`
`protected int`	`layoutIllum`
`protected int`	`layoutTP`
`protected int`	`numDigitsAngles`
`protected int`	`numDigitsChannels`
`protected int`	`numDigitsIlluminations`
`protected int`	`numDigitsTimepoints`
`protected File`	`path`
`protected String`	`replaceAngles`
`protected String`	`replaceChannels`
`protected String`	`replaceIlluminations`
`protected String`	`replaceTimepoints`
`protected AbstractSequenceDescription<?,?,?>`	`sequenceDescription`

Fields inherited from class spim.fiji.spimdata.imgloaders.AbstractImgFactoryImgLoader
imgFactory

Constructor Summary

Constructors
Constructor and Description
`LegacyStackImgLoader(File path, String fileNamePattern, ImgFactory<? extends NativeType<?>> imgFactory, int layoutTP, int layoutChannels, int layoutIllum, int layoutAngles, AbstractSequenceDescription<?,?,?> sequenceDescription)` For a local initialization without the XML

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`protected File`	`getFile(ViewId view)`
`String`	`getFileNamePattern()`
`int`	`getLayoutAngles()`
`int`	`getLayoutChannels()`
`int`	`getLayoutIlluminations()`
`int`	`getLayoutTimePoints()`
`File`	`getPath()`
`protected void`	`init(ImgFactory<? extends NativeType<?>> imgFactory)`
`protected <T extends NativeType<T>> Img<T>`	`instantiateImg(long[] dim, T type)`

Methods inherited from class spim.fiji.spimdata.imgloaders.AbstractImgFactoryImgLoader
getImgFactory, setImgFactory

Methods inherited from class spim.fiji.spimdata.imgloaders.AbstractImgLoader
getImageSize, getImageType, getVoxelSize, loadMetaData, normalize, updateMetaDataCache, updateXMLMetaData, updateXMLMetaData, updateXMLMetaData

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface mpicbg.spim.data.legacy.LegacyImgLoader
getFloatImage

Methods inherited from interface mpicbg.spim.data.legacy.LegacyBasicImgLoader
getImage

Field Detail

path
```
protected File path
```

fileNamePattern
```
protected String fileNamePattern
```

replaceTimepoints
```
protected String replaceTimepoints
```

replaceChannels
```
protected String replaceChannels
```

replaceIlluminations
```
protected String replaceIlluminations
```

replaceAngles
```
protected String replaceAngles
```

numDigitsTimepoints
```
protected int numDigitsTimepoints
```

numDigitsChannels
```
protected int numDigitsChannels
```

numDigitsIlluminations
```
protected int numDigitsIlluminations
```

numDigitsAngles
```
protected int numDigitsAngles
```

layoutTP
```
protected int layoutTP
```

layoutChannels
```
protected int layoutChannels
```

layoutIllum
```
protected int layoutIllum
```

layoutAngles
```
protected int layoutAngles
```

sequenceDescription

protected AbstractSequenceDescription<?,?,?> sequenceDescription

Constructor Detail

LegacyStackImgLoader

public LegacyStackImgLoader(File path,
                            String fileNamePattern,
                            ImgFactory<? extends NativeType<?>> imgFactory,
                            int layoutTP,
                            int layoutChannels,
                            int layoutIllum,
                            int layoutAngles,
                            AbstractSequenceDescription<?,?,?> sequenceDescription)

For a local initialization without the XML

Parameters:: path -; fileNamePattern -; imgFactory -; layoutTP - - 0 == one, 1 == one per file, 2 == all in one file; layoutChannels - - 0 == one, 1 == one per file, 2 == all in one file; layoutIllum - - 0 == one, 1 == one per file, 2 == all in one file; layoutAngles - - 0 == one, 1 == one per file, 2 == all in one file

Method Detail

getPath
```
public File getPath()
```

getFileNamePattern
```
public String getFileNamePattern()
```

getLayoutTimePoints
```
public int getLayoutTimePoints()
```

getLayoutChannels
```
public int getLayoutChannels()
```

getLayoutIlluminations
```
public int getLayoutIlluminations()
```

getLayoutAngles
```
public int getLayoutAngles()
```

instantiateImg

protected <T extends NativeType<T>> Img<T> instantiateImg(long[] dim,
                                                          T type)

getFile
```
protected File getFile(ViewId view)
```

init

protected void init(ImgFactory<? extends NativeType<?>> imgFactory)

Class LegacyStackImgLoader

Field Summary

Fields inherited from class spim.fiji.spimdata.imgloaders.AbstractImgFactoryImgLoader

Constructor Summary

Method Summary

Methods inherited from class spim.fiji.spimdata.imgloaders.AbstractImgFactoryImgLoader

Methods inherited from class spim.fiji.spimdata.imgloaders.AbstractImgLoader

Methods inherited from class java.lang.Object

Methods inherited from interface mpicbg.spim.data.legacy.LegacyImgLoader

Methods inherited from interface mpicbg.spim.data.legacy.LegacyBasicImgLoader

Field Detail

path

fileNamePattern

replaceTimepoints

replaceChannels

replaceIlluminations

replaceAngles

numDigitsTimepoints

numDigitsChannels

numDigitsIlluminations

numDigitsAngles

layoutTP

layoutChannels

layoutIllum

layoutAngles

sequenceDescription

Constructor Detail

LegacyStackImgLoader

Method Detail

getPath

getFileNamePattern

getLayoutTimePoints

getLayoutChannels

getLayoutIlluminations

getLayoutAngles

instantiateImg

getFile

init