Field Detail

• scalingFactorRegularizerWeight

  public Double scalingFactorRegularizerWeight

• coordinateUpdateRegularizerWeight

  public Double coordinateUpdateRegularizerWeight

• shiftProportion

  public Double shiftProportion

• nIterations

  public Integer nIterations

• comparisonRange

  public Integer comparisonRange

• minimumSectionThickness

  public Double minimumSectionThickness

• regularizationType

  public InferFromMatrix.RegularizationType regularizationType

• scalingFactorEstimationIterations

  public Integer scalingFactorEstimationIterations

• withReorder

  public Boolean withReorder

• forceMonotonicity

  public Boolean forceMonotonicity

• estimateWindowRadius

  public Integer estimateWindowRadius

• minimumCorrelationValue

  public Double minimumCorrelationValue

Constructor Detail

• Options

  public Options()

Method Detail

• generateDefaultOptions

  public static Options generateDefaultOptions()

• read

  public static Options read(String filename)
                      throws com.google.gson.JsonSyntaxException,
                             com.google.gson.JsonIOException,
                             FileNotFoundException

  Throws:

  com.google.gson.JsonSyntaxException

  com.google.gson.JsonIOException

  FileNotFoundException

• clone

  public Options clone()

  Overrides:

  clone in class Object

• toString

  public String toString()

  Overrides:

  toString in class Object

• toFile

  public void toFile(String filename)
              throws IOException

  Throws:

  IOException

• equals

  public boolean equals(Object other)

  Overrides:

  equals in class Object