GraphColorMapper (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- sc.fiji.snt.analysis.ColorMapper
- - sc.fiji.snt.analysis.graph.GraphColorMapper<V,E>

public class GraphColorMapper<V,E extends org.jgrapht.graph.DefaultWeightedEdge>
extends ColorMapper

Field Summary

Fields
Modifier and Type	Field and Description
`static String`	`BETWEENNESS_CENTRALITY` Flag for "Betweenness centrality" mapping.
`static String`	`CONNECTIVITY` Flag for "Connected components" mapping.
`static String`	`ECCENTRICITY` Flag for "Eccentricity" mapping.
`static String`	`EDGE_WEIGHT` Flag for "Edge weight" mapping.
`static int`	`EDGES`
`protected SNTGraph<V,E>`	`graph`
`static String`	`HEAVY_PATH_DECOMPOSITION` Flag for "Heavy path decomposition" mapping.
`static String`	`IN_DEGREE` Flag for "In degree" mapping.
`static String`	`INCOMING_WEIGHT` Flag for "Incoming weight" mapping.
`static String`	`OUT_DEGREE` Flag for "Out degree" mapping.
`static String`	`OUTGOING_WEIGHT` Flag for "Outgoing weight" mapping.
`static String`	`PAGE_RANK` Flag for "Page rank" mapping.
`protected org.jgrapht.graph.AsSubgraph<V,E>`	`subgraph`
`static int`	`VERTICES`
`static int`	`VERTICES_AND_EDGES`

Fields inherited from class sc.fiji.snt.analysis.ColorMapper
colorTable, integerScale, max, min

Constructor Summary

Constructors
Constructor and Description

GraphColorMapper()

GraphColorMapper(Context context)

Constructors
Constructor and Description
`GraphColorMapper()`
`GraphColorMapper(Context context)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`Set<String>`	`getAvailableLuts()` Gets the available LUTs.
`ColorTable`	`getColorTable(String lut)`
`static List<String>`	`getMetrics()` Gets the list of supported mapping metrics.
`int`	`map(SNTGraph<V,E> graph, org.jgrapht.graph.AsSubgraph<V,E> subgraph, String measurement, ColorTable colorTable)`
`int`	`map(SNTGraph<V,E> graph, String measurement, ColorTable colorTable)`
`int`	`map(SNTGraph<V,E> graph, String measurement, String lut)`
`protected void`	`mapToBetweennessCentrality(ColorTable colorTable)`
`protected void`	`mapToConnectivity(ColorTable colorTable)`
`protected void`	`mapToEccentricity(ColorTable colorTable)`
`protected void`	`mapToEdgeWeight(ColorTable colorTable)`
`protected void`	`mapToHeavyPathDecomposition(ColorTable colorTable)`
`protected void`	`mapToIncomingWeight(ColorTable colorTable)`
`protected void`	`mapToInDegree(ColorTable colorTable)`
`protected void`	`mapToOutDegree(ColorTable colorTable)`
`protected void`	`mapToOutgoingWeight(ColorTable colorTable)`
`protected void`	`mapToPageRank(ColorTable colorTable)`
`protected void`	`mapToProperty(String measurement, ColorTable colorTable)`
`void`	`resetMinMax()`
`void`	`setMinMax(double min, double max)` Sets the LUT mapping bounds.

Methods inherited from class sc.fiji.snt.analysis.ColorMapper
getColor, getColorRGB, getColorTable, getMinMax, map

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail
- BETWEENNESS_CENTRALITY
```
public static final String BETWEENNESS_CENTRALITY
```
  Flag for "Betweenness centrality" mapping.
  
  See Also:
  
  Constant Field Values
- ECCENTRICITY
```
public static final String ECCENTRICITY
```
  Flag for "Eccentricity" mapping.
  
  See Also:
  
  Constant Field Values
- CONNECTIVITY
```
public static final String CONNECTIVITY
```
  Flag for "Connected components" mapping.
  
  See Also:
  
  Constant Field Values
- EDGE_WEIGHT
```
public static final String EDGE_WEIGHT
```
  Flag for "Edge weight" mapping.
  
  See Also:
  
  Constant Field Values
- PAGE_RANK
```
public static final String PAGE_RANK
```
  Flag for "Page rank" mapping.
  
  See Also:
  
  Constant Field Values
- IN_DEGREE
```
public static final String IN_DEGREE
```
  Flag for "In degree" mapping.
  
  See Also:
  
  Constant Field Values
- OUT_DEGREE
```
public static final String OUT_DEGREE
```
  Flag for "Out degree" mapping.
  
  See Also:
  
  Constant Field Values
- INCOMING_WEIGHT
```
public static final String INCOMING_WEIGHT
```
  Flag for "Incoming weight" mapping.
  
  See Also:
  
  Constant Field Values
- OUTGOING_WEIGHT
```
public static final String OUTGOING_WEIGHT
```
  Flag for "Outgoing weight" mapping.
  
  See Also:
  
  Constant Field Values
- HEAVY_PATH_DECOMPOSITION
```
public static final String HEAVY_PATH_DECOMPOSITION
```
  Flag for "Heavy path decomposition" mapping.
  
  See Also:
  
  Constant Field Values
- VERTICES
```
public static final int VERTICES
```
  See Also:
  
  Constant Field Values
- EDGES
```
public static final int EDGES
```
  See Also:
  
  Constant Field Values
- VERTICES_AND_EDGES
```
public static final int VERTICES_AND_EDGES
```
  See Also:
  
  Constant Field Values
- graph
```
protected SNTGraph<V,E extends org.jgrapht.graph.DefaultWeightedEdge> graph
```
- subgraph
```
protected org.jgrapht.graph.AsSubgraph<V,E extends org.jgrapht.graph.DefaultWeightedEdge> subgraph
```

Constructor Detail

GraphColorMapper

public GraphColorMapper(Context context)

GraphColorMapper
```
public GraphColorMapper()
```

Method Detail

getMetrics
```
public static List<String> getMetrics()
```
Gets the list of supported mapping metrics.

Returns:

the list of mapping metrics.

getAvailableLuts
```
public Set<String> getAvailableLuts()
```
Gets the available LUTs.

Returns:

the set of keys, corresponding to the set of LUTs available

getColorTable

public ColorTable getColorTable(String lut)

map

public int map(SNTGraph<V,E> graph,
               String measurement,
               String lut)

map

public int map(SNTGraph<V,E> graph,
               String measurement,
               ColorTable colorTable)

map

public int map(SNTGraph<V,E> graph,
               org.jgrapht.graph.AsSubgraph<V,E> subgraph,
               String measurement,
               ColorTable colorTable)

mapToProperty

protected void mapToProperty(String measurement,
                             ColorTable colorTable)

mapToConnectivity

protected void mapToConnectivity(ColorTable colorTable)

mapToEdgeWeight

protected void mapToEdgeWeight(ColorTable colorTable)

mapToBetweennessCentrality

protected void mapToBetweennessCentrality(ColorTable colorTable)

mapToEccentricity

protected void mapToEccentricity(ColorTable colorTable)

mapToPageRank

protected void mapToPageRank(ColorTable colorTable)

mapToInDegree

protected void mapToInDegree(ColorTable colorTable)

mapToOutDegree

protected void mapToOutDegree(ColorTable colorTable)

mapToIncomingWeight

protected void mapToIncomingWeight(ColorTable colorTable)

mapToOutgoingWeight

protected void mapToOutgoingWeight(ColorTable colorTable)

mapToHeavyPathDecomposition

protected void mapToHeavyPathDecomposition(ColorTable colorTable)

setMinMax
```
public void setMinMax(double min,
                      double max)
```
Description copied from class: ColorMapper

Sets the LUT mapping bounds.

Overrides:

setMinMax in class ColorMapper

Parameters:

min - the mapping lower bound (i.e., the highest measurement value for the LUT scale). It is automatically calculated (the default) when set to Double.NaN

max - the mapping upper bound (i.e., the highest measurement value for the LUT scale).It is automatically calculated (the default) when set to Double.NaN.

resetMinMax
```
public void resetMinMax()
```

Class GraphColorMapper<V,E extends org.jgrapht.graph.DefaultWeightedEdge>

Field Summary

Fields inherited from class sc.fiji.snt.analysis.ColorMapper

Constructor Summary

Method Summary

Methods inherited from class sc.fiji.snt.analysis.ColorMapper

Methods inherited from class java.lang.Object

Field Detail

BETWEENNESS_CENTRALITY

ECCENTRICITY

CONNECTIVITY

EDGE_WEIGHT

PAGE_RANK

IN_DEGREE

OUT_DEGREE

INCOMING_WEIGHT

OUTGOING_WEIGHT

HEAVY_PATH_DECOMPOSITION

VERTICES

EDGES

VERTICES_AND_EDGES

graph

subgraph

Constructor Detail

GraphColorMapper

GraphColorMapper

Method Detail

getMetrics

getAvailableLuts

getColorTable

map

map

map

mapToProperty

mapToConnectivity

mapToEdgeWeight

mapToBetweennessCentrality

mapToEccentricity

mapToPageRank

mapToInDegree

mapToOutDegree

mapToIncomingWeight

mapToOutgoingWeight

mapToHeavyPathDecomposition

setMinMax

resetMinMax