TracerThread (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- sc.fiji.snt.tracing.AbstractSearch
- - sc.fiji.snt.tracing.SearchThread
  - - sc.fiji.snt.tracing.TracerThread

All Implemented Interfaces:

Runnable, SearchInterface
```
public class TracerThread
extends SearchThread
```
SNT's default tracer thread: explores between two points in an image, doing an A* search with a choice of distance measures.

Field Summary
- Fields inherited from class sc.fiji.snt.tracing.SearchThread
  CANCELLED, CLOSED_FROM_GOAL, closed_from_goal_count, CLOSED_FROM_START, closed_from_start_count, costFunction, EXIT_REASONS_STRINGS, exitReason, FREE, lastReportMilliseconds, loops, loops_at_last_report, nodes_as_image_from_goal, nodes_as_image_from_start, OPEN_FROM_GOAL, open_from_start, OPEN_FROM_START, OUT_OF_MEMORY, POINTS_EXHAUSTED, started_at, SUCCESS, TIMED_OUT, verbose
- Fields inherited from class sc.fiji.snt.tracing.AbstractSearch
  img, imgAccess, imgDepth, imgHeight, imgWidth, progressListeners, reportEveryMilliseconds, spacing_units, timeoutSeconds, xMax, xMin, xSep, yMax, yMin, ySep, zMax, zMin, zSep

Constructor Summary

Constructors
Constructor and Description
`TracerThread(Dataset dataset, int start_x, int start_y, int start_z, int goal_x, int goal_y, int goal_z, Cost costFunction)`
`TracerThread(Dataset dataset, int start_x, int start_y, int start_z, int goal_x, int goal_y, int goal_z, Cost costFunction, Heuristic heuristic)`
`TracerThread(Dataset dataset, int start_x, int start_y, int start_z, int goal_x, int goal_y, int goal_z, int timeoutSeconds, long reportEveryMilliseconds, Cost costFunction, Heuristic heuristic)`
`TracerThread(Dataset dataset, int start_x, int start_y, int start_z, int goal_x, int goal_y, int goal_z, int timeoutSeconds, long reportEveryMilliseconds, SNT.SearchImageType searchImageType, Cost costFunction, Heuristic heuristic)`
`TracerThread(RandomAccessibleInterval<? extends RealType<?>> image, ij.measure.Calibration calibration, int start_x, int start_y, int start_z, int goal_x, int goal_y, int goal_z, int timeoutSeconds, long reportEveryMilliseconds, SNT.SearchImageType searchImageType, Cost costFunction, Heuristic heuristic)`
`TracerThread(SNT snt, int start_x, int start_y, int start_z, int goal_x, int goal_y, int goal_z)`
`TracerThread(SNT snt, int start_x, int start_y, int start_z, int goal_x, int goal_y, int goal_z, Cost costFunction, Heuristic heuristic)`
`TracerThread(SNT snt, RandomAccessibleInterval<? extends RealType<?>> image, int start_x, int start_y, int start_z, int goal_x, int goal_y, int goal_z, Cost costFunction, Heuristic heuristic)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`protected boolean`	`atGoal(int x, int y, int z, boolean fromStart)`
`protected double`	`estimateCostToGoal(int current_x, int current_y, int current_z, boolean fromStart)`
`protected void`	`foundGoal(Path pathToGoal)`
`Path`	`getResult()`

Methods inherited from class sc.fiji.snt.tracing.SearchThread
addNode, addProgressListener, checkStatus, createNewNode, getExitReason, getNodesAsImageFromGoal, getNodesAsImageFromStart, pointsConsideredInSearch, printStatus, reportFinished, reportPointsInSearch, run

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TracerThread

public TracerThread(SNT snt,
                    int start_x,
                    int start_y,
                    int start_z,
                    int goal_x,
                    int goal_y,
                    int goal_z)

TracerThread

public TracerThread(SNT snt,
                    int start_x,
                    int start_y,
                    int start_z,
                    int goal_x,
                    int goal_y,
                    int goal_z,
                    Cost costFunction,
                    Heuristic heuristic)

TracerThread

public TracerThread(SNT snt,
                    RandomAccessibleInterval<? extends RealType<?>> image,
                    int start_x,
                    int start_y,
                    int start_z,
                    int goal_x,
                    int goal_y,
                    int goal_z,
                    Cost costFunction,
                    Heuristic heuristic)

TracerThread

public TracerThread(RandomAccessibleInterval<? extends RealType<?>> image,
                    ij.measure.Calibration calibration,
                    int start_x,
                    int start_y,
                    int start_z,
                    int goal_x,
                    int goal_y,
                    int goal_z,
                    int timeoutSeconds,
                    long reportEveryMilliseconds,
                    SNT.SearchImageType searchImageType,
                    Cost costFunction,
                    Heuristic heuristic)

TracerThread

public TracerThread(Dataset dataset,
                    int start_x,
                    int start_y,
                    int start_z,
                    int goal_x,
                    int goal_y,
                    int goal_z,
                    int timeoutSeconds,
                    long reportEveryMilliseconds,
                    SNT.SearchImageType searchImageType,
                    Cost costFunction,
                    Heuristic heuristic)

TracerThread

public TracerThread(Dataset dataset,
                    int start_x,
                    int start_y,
                    int start_z,
                    int goal_x,
                    int goal_y,
                    int goal_z,
                    int timeoutSeconds,
                    long reportEveryMilliseconds,
                    Cost costFunction,
                    Heuristic heuristic)

TracerThread

public TracerThread(Dataset dataset,
                    int start_x,
                    int start_y,
                    int start_z,
                    int goal_x,
                    int goal_y,
                    int goal_z,
                    Cost costFunction,
                    Heuristic heuristic)

TracerThread

public TracerThread(Dataset dataset,
                    int start_x,
                    int start_y,
                    int start_z,
                    int goal_x,
                    int goal_y,
                    int goal_z,
                    Cost costFunction)

Method Detail

atGoal

protected boolean atGoal(int x,
                         int y,
                         int z,
                         boolean fromStart)

Overrides:: atGoal in class SearchThread

foundGoal
```
protected void foundGoal(Path pathToGoal)
```
Overrides:

foundGoal in class SearchThread

getResult
```
public Path getResult()
```

estimateCostToGoal

protected double estimateCostToGoal(int current_x,
                                    int current_y,
                                    int current_z,
                                    boolean fromStart)

Class TracerThread

Field Summary

Fields inherited from class sc.fiji.snt.tracing.SearchThread

Fields inherited from class sc.fiji.snt.tracing.AbstractSearch

Constructor Summary

Method Summary

Methods inherited from class sc.fiji.snt.tracing.SearchThread

Methods inherited from class java.lang.Object

Constructor Detail

TracerThread

TracerThread

TracerThread

TracerThread

TracerThread

TracerThread

TracerThread

TracerThread

Method Detail

atGoal

foundGoal

getResult

estimateCostToGoal