Field Detail

• PopList

  public BalloonPopulation[] PopList

• N

  public int N

Constructor Detail

• BalloonSequence

  public BalloonSequence(ij.ImagePlus imp_in)

  BalloonSequence constructor: initiate a sequence of Balloon population from a stack of images

Method Detail

• setSequence

  public void setSequence(int currentSlice,
                          ij.process.ImageProcessor ipWallSegment,
                          int rgbchannel)

  initiate a new balloon population

• setSequence

  public void setSequence(int currentSlice,
                          ij.process.ImageProcessor ipWallSegment,
                          ArrayList X0,
                          ArrayList Y0,
                          int rgbchannel)

• importSeeds

  public ArrayList<double[]> importSeeds(String directory,
                                         String file_name,
                                         int currentSlice)

  Read files with XYZ position for centres Circular balloon centrerd on x,y with id ID

• getStructureInfo

  public StringBuffer getStructureInfo()

  Output a formatted data of the balloon structure and sequence

• setStructureFromFile

  public void setStructureFromFile(String directory,
                                   String file_name)

  Reconstruct the structure from saved data