Constructor Detail

• Flat

  public Flat()

Method Detail

• getInstance

  public static Flat getInstance()

• getFastInstance

  public static FastFlat getFastInstance()

• run

  @Deprecated
  public static void run(ij.ImagePlus imp,
                                     int blockRadius,
                                     int bins,
                                     float slope,
                                     ij.process.ByteProcessor mask)

  Deprecated. Use the instance method getInstance().run(ImagePlus, int, int, float, ByteProcessor, boolean) instead.
  Process an ImagePlus with a given set of parameters. Create mask and bounding box from the Roi of that ImagePlus and the passed mask if any. Process CompositeImages as such.

  Parameters:

  imp -

  blockRadius -

  bins -

  slope -

  mask - can be null

• run

  public final void run(ij.ImagePlus imp,
                        int blockRadius,
                        int bins,
                        float slope,
                        ij.process.ByteProcessor mask,
                        boolean composite)

  Process and ImagePlus with a given set of parameters. Create mask and bounding box from the Roi of that ImagePlus and the passed mask if any.

  Parameters:

  imp -

  blockRadius -

  bins -

  slope -

  mask - can be null

  composite - how to process CompositeImages true: interpret the displayed image as luminance channel for estimating the contrast transfer function false: process the active channel only as for non-composite images

• run

  public final void run(ij.ImagePlus imp,
                        int blockRadius,
                        int bins,
                        float slope,
                        Rectangle roiBox,
                        ij.process.ByteProcessor mask,
                        boolean composite)

  Process and ImagePlus with a given set of parameters including the bounding box and mask.

  Parameters:

  imp -

  blockRadius -

  bins -

  slope -

  roiBox - can be null

  mask - can be null

  composite - how to process CompositeImages true: interpret the displayed image as luminance channel for estimating the contrast transfer function false: process the active channel only as for non-composite images

• run

  protected void run(ij.ImagePlus imp,
                     int blockRadius,
                     int bins,
                     float slope,
                     int boxXMin,
                     int boxYMin,
                     int boxXMax,
                     int boxYMax,
                     ij.process.ByteProcessor src,
                     ij.process.ByteProcessor dst,
                     ij.process.ByteProcessor mask,
                     ij.process.ImageProcessor ip,
                     boolean composite,
                     ArrayList<mpicbg.ij.clahe.Apply<?>> appliers)

  The actual implementation

  Parameters:

  imp -

  blockRadius -

  bins -

  slope -

  boxXMin -

  boxYMin -

  boxXMax -

  boxYMax -

  src -

  dst -

  mask -

  ip -