ShollAnalysisPrefsCmd (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- org.scijava.module.AbstractModule
- - org.scijava.module.DefaultMutableModule
  - - org.scijava.command.DynamicCommand
    - - org.scijava.options.OptionsPlugin
      - sc.fiji.snt.plugin.ShollAnalysisPrefsCmd

All Implemented Interfaces:

Runnable, Cancelable, Command, Contextual, Module, MutableModule, SciJavaPlugin, SingletonPlugin
```
public class ShollAnalysisPrefsCmd
extends OptionsPlugin
```
Implements the "Sholl Options" command

Author:

Tiago Ferreira

Field Summary

Fields
Modifier and Type	Field and Description
`static boolean`	`DEF_DEBUG_MODE`
`static boolean`	`DEF_DETAILED_METRICS`
`static int`	`DEF_ENCLOSING_RADIUS_CUTOFF`
`static boolean`	`DEF_INCLUDE_ZERO_COUNTS`
`static boolean`	`DEF_KS_TESTING`
`static int`	`DEF_MAX_DEGREE`
`static int`	`DEF_MIN_DEGREE`
`static double`	`DEF_RSQUARED`
`static boolean`	`DEF_SKIP_SINGLE_VOXELS`
`static boolean`	`DEF_SKIP_SOMATIC_SEGMENTS`
`protected static String`	`DESCRIPTION_HTML`
`protected static String`	`HEADER_HTML`

Fields inherited from class org.scijava.options.OptionsPlugin
eventService

Fields inherited from class org.scijava.command.DynamicCommand
moduleService, pluginService

Constructor Summary

Constructors
Constructor and Description

ShollAnalysisPrefsCmd()

Constructors
Constructor and Description
`ShollAnalysisPrefsCmd()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type Method and Description

void reset()

void run()
- Methods inherited from class org.scijava.options.OptionsPlugin
  cancel, load, save
- Methods inherited from class org.scijava.command.DynamicCommand
  cancel, context, getCancelReason, getContext, getInfo, getInput, getOutput, isCanceled, saveInputs, setContext, setInput, setOutput, uncancel
- Methods inherited from class org.scijava.module.AbstractModule
  getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, unresolveInput, unresolveOutput
- Methods inherited from class java.lang.Object
  clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
- Methods inherited from interface org.scijava.module.MutableModule
  addInput, addInput, addOutput, addOutput, removeInput, removeOutput
- Methods inherited from interface org.scijava.module.Module
  getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, isResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, setResolved, unresolveInput, unresolveOutput

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`reset()`
`void`	`run()`

- Field Detail
  - DEF_SKIP_SINGLE_VOXELS
```
public static final boolean DEF_SKIP_SINGLE_VOXELS
```
    See Also:
    
    Constant Field Values
  - DEF_INCLUDE_ZERO_COUNTS
```
public static final boolean DEF_INCLUDE_ZERO_COUNTS
```
    See Also:
    
    Constant Field Values
  - DEF_SKIP_SOMATIC_SEGMENTS
```
public static final boolean DEF_SKIP_SOMATIC_SEGMENTS
```
    See Also:
    
    Constant Field Values
  - DEF_ENCLOSING_RADIUS_CUTOFF
```
public static final int DEF_ENCLOSING_RADIUS_CUTOFF
```
    See Also:
    
    Constant Field Values
  - DEF_MIN_DEGREE
```
public static final int DEF_MIN_DEGREE
```
    See Also:
    
    Constant Field Values
  - DEF_MAX_DEGREE
```
public static final int DEF_MAX_DEGREE
```
    See Also:
    
    Constant Field Values
  - DEF_RSQUARED
```
public static final double DEF_RSQUARED
```
    See Also:
    
    Constant Field Values
  - DEF_KS_TESTING
```
public static final boolean DEF_KS_TESTING
```
    See Also:
    
    Constant Field Values
  - DEF_DEBUG_MODE
```
public static final boolean DEF_DEBUG_MODE
```
    See Also:
    
    Constant Field Values
  - DEF_DETAILED_METRICS
```
public static final boolean DEF_DETAILED_METRICS
```
    See Also:
    
    Constant Field Values
  - HEADER_HTML
```
protected static final String HEADER_HTML
```
    See Also:
    
    Constant Field Values
  - DESCRIPTION_HTML
```
protected static final String DESCRIPTION_HTML
```
    See Also:
    
    Constant Field Values
- Constructor Detail
  - ShollAnalysisPrefsCmd
```
public ShollAnalysisPrefsCmd()
```
- Method Detail
  - run
```
public void run()
```
    Specified by:
    
    run in interface Runnable
    
    Specified by:
    
    run in interface MutableModule
    
    Overrides:
    
    run in class OptionsPlugin
  - reset
```
public void reset()
```
    Overrides:
    
    reset in class OptionsPlugin

Class ShollAnalysisPrefsCmd

Field Summary

Fields inherited from class org.scijava.options.OptionsPlugin

Fields inherited from class org.scijava.command.DynamicCommand

Constructor Summary

Method Summary

Methods inherited from class org.scijava.options.OptionsPlugin

Methods inherited from class org.scijava.command.DynamicCommand

Methods inherited from class org.scijava.module.AbstractModule

Methods inherited from class java.lang.Object

Methods inherited from interface org.scijava.module.MutableModule

Methods inherited from interface org.scijava.module.Module

Field Detail

DEF_SKIP_SINGLE_VOXELS

DEF_INCLUDE_ZERO_COUNTS

DEF_SKIP_SOMATIC_SEGMENTS

DEF_ENCLOSING_RADIUS_CUTOFF

DEF_MIN_DEGREE

DEF_MAX_DEGREE

DEF_RSQUARED

DEF_KS_TESTING

DEF_DEBUG_MODE

DEF_DETAILED_METRICS

HEADER_HTML

DESCRIPTION_HTML

Constructor Detail

ShollAnalysisPrefsCmd

Method Detail

run

reset