NonLinearCoordinateTransform (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- mpicbg.trakem2.transform.NonLinearCoordinateTransform

All Implemented Interfaces:

Serializable, CoordinateTransform

Direct Known Subclasses:

NonLinearTransform
```
public class NonLinearCoordinateTransform
extends Object
implements CoordinateTransform
```
See Also:

Serialized Form

Field Summary

Fields
Modifier and Type	Field and Description
`protected double[][]`	`beta`
`protected int`	`dimension`
`protected int`	`height`
`protected int`	`length`
`protected double[]`	`normMean`
`protected double[]`	`normVar`
`protected int`	`width`

Constructor Summary

Constructors
Constructor and Description

NonLinearCoordinateTransform()

Constructors
Constructor and Description
`NonLinearCoordinateTransform()`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`double[]`	`apply(double[] location)` Apply the `CoordinateTransform` to a location.
`void`	`applyInPlace(double[] location)` Apply the `CoordinateTransform` to a location.
`NonLinearCoordinateTransform`	`copy()` TODO Make this more efficient
`void`	`init(String data)` Initialize the properties of the `CoordinateTransform` from a data string as generated by `CoordinateTransform.toDataString()`.
`double[]`	`kernelExpand(double[] position)`
`protected static double[]`	`multiply(double[][] beta, double[] featureVector)`
`String`	`toDataString()` Create a `String` representation of the properties of the `CoordinateTransform` that can be used to re-create itself with `CoordinateTransform.init(String)`.
`String`	`toString()`
`String`	`toXML(String indent)` Create an XML-export of the `CoordinateTransform` for use in TrakEM2.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - beta
```
protected double[][] beta
```
  - normMean
```
protected double[] normMean
```
  - normVar
```
protected double[] normVar
```
  - dimension
```
protected int dimension
```
  - length
```
protected int length
```
  - width
```
protected int width
```
  - height
```
protected int height
```
- Constructor Detail
  - NonLinearCoordinateTransform
```
public NonLinearCoordinateTransform()
```
- Method Detail
  - init
```
public void init(String data)
          throws NumberFormatException
```
    Description copied from interface: CoordinateTransform
    
    Initialize the properties of the CoordinateTransform from a data string as generated by CoordinateTransform.toDataString().
    
    Throws:
    
    NumberFormatException
  - toXML
```
public String toXML(String indent)
```
    Description copied from interface: CoordinateTransform
    
    Create an XML-export of the CoordinateTransform for use in TrakEM2.
    
    Returns:
    
    TrakEM2-readable XML
  - toDataString
```
public String toDataString()
```
    Description copied from interface: CoordinateTransform
    
    Create a String representation of the properties of the CoordinateTransform that can be used to re-create itself with CoordinateTransform.init(String).
    
    Returns:
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class Object
  - apply
```
public double[] apply(double[] location)
```
    Description copied from interface: CoordinateTransform
    
    Apply the CoordinateTransform to a location.
    
    Specified by:
    
    apply in interface CoordinateTransform
    
    Returns:
    
    transformed location
  - applyInPlace
```
public void applyInPlace(double[] location)
```
    Description copied from interface: CoordinateTransform
    
    Apply the CoordinateTransform to a location.
    
    Specified by:
    
    applyInPlace in interface CoordinateTransform
  - multiply
```
protected static double[] multiply(double[][] beta,
                                   double[] featureVector)
```
  - kernelExpand
```
public double[] kernelExpand(double[] position)
```
  - copy
```
public NonLinearCoordinateTransform copy()
```
    TODO Make this more efficient

Class NonLinearCoordinateTransform

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

beta

normMean

normVar

dimension

length

width

height

Constructor Detail

NonLinearCoordinateTransform

Method Detail

init

toXML

toDataString

toString

apply

applyInPlace

multiply

kernelExpand

copy