Field Detail

• defaultShowHistogram

  public static boolean[] defaultShowHistogram

• defaultSubSampling

  public static int[] defaultSubSampling

• defaultNewLabels

  public static String[] defaultNewLabels

• defaultRemoveKeep

  public static int[] defaultRemoveKeep

• defaultCutoffThresholdMin

  public static double[] defaultCutoffThresholdMin

• defaultCutoffThresholdMax

  public static double[] defaultCutoffThresholdMax

• removeKeepChoice

  public static String[] removeKeepChoice

• defaultThresholdMinValue

  public static double defaultThresholdMinValue

• defaultThresholdMaxValue

  public static double defaultThresholdMaxValue

• defaultSubSamplingValue

  public static int defaultSubSamplingValue

• defaultNewLabelText

  public static String defaultNewLabelText

• defaultRemoveKeepValue

  public static int defaultRemoveKeepValue

Constructor Detail

• ThinOut_Detections

  public ThinOut_Detections()

Method Detail

• run

  public void run(String arg)

  Specified by:

  run in interface ij.plugin.PlugIn

• thinOut

  public static boolean thinOut(SpimData2 spimData,
                                List<ViewId> viewIds,
                                List<ChannelProcessThinOut> channels,
                                boolean save)

• getThinOutThresholds

  public static boolean getThinOutThresholds(SpimData2 spimData,
                                             List<ViewId> viewIds,
                                             List<ChannelProcessThinOut> channels)

• plotHistogram

  public static Histogram plotHistogram(SpimData2 spimData,
                                        List<ViewId> viewIds,
                                        ChannelProcessThinOut channel)

• getChannelsAndLabels

  public static ArrayList<ChannelProcessThinOut> getChannelsAndLabels(SpimData2 spimData,
                                                                      List<ViewId> viewIds)

• main

  public static void main(String[] args)