LogDetector (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- fiji.plugin.trackmate.detection.LogDetector<T>

All Implemented Interfaces:

SpotDetector<T>, Algorithm, Benchmark, MultiThreaded, OutputAlgorithm<List<Spot>>

Direct Known Subclasses:

DogDetector
```
public class LogDetector<T extends RealType<T> & NativeType<T>>
extends Object
implements SpotDetector<T>, MultiThreaded
```

Field Summary

Fields
Modifier and Type	Field and Description
`protected String`	`baseErrorMessage`
`protected double[]`	`calibration`
`protected boolean`	`doMedianFilter`
`protected boolean`	`doSubPixelLocalization`
`protected String`	`errorMessage`
`protected RandomAccessible<T>`	`img` The image to segment.
`protected Interval`	`interval`
`protected int`	`numThreads`
`protected long`	`processingTime` The processing time in ms.
`protected double`	`radius`
`protected List<Spot>`	`spots` The list of `Spot` that will be populated by this detector.
`protected double`	`threshold`

Constructor Summary

Constructors
Constructor and Description
`LogDetector(RandomAccessible<T> img, Interval interval, double[] calibration, double radius, double threshold, boolean doSubPixelLocalization, boolean doMedianFilter)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`boolean`	`checkInput()`
`String`	`getErrorMessage()`
`int`	`getNumThreads()`
`long`	`getProcessingTime()`
`List<Spot>`	`getResult()`
`boolean`	`process()`
`void`	`setNumThreads()`
`void`	`setNumThreads(int numThreads)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

img

protected RandomAccessible<T extends RealType<T> & NativeType<T>> img

The image to segment. Will not modified.

radius
```
protected double radius
```

threshold
```
protected double threshold
```

doSubPixelLocalization

protected boolean doSubPixelLocalization

doMedianFilter
```
protected boolean doMedianFilter
```

baseErrorMessage
```
protected String baseErrorMessage
```

errorMessage
```
protected String errorMessage
```

spots
```
protected List<Spot> spots
```
The list of Spot that will be populated by this detector.

processingTime
```
protected long processingTime
```
The processing time in ms.

numThreads
```
protected int numThreads
```

interval
```
protected final Interval interval
```

calibration
```
protected final double[] calibration
```

Constructor Detail

LogDetector

public LogDetector(RandomAccessible<T> img,
                   Interval interval,
                   double[] calibration,
                   double radius,
                   double threshold,
                   boolean doSubPixelLocalization,
                   boolean doMedianFilter)

Method Detail
- checkInput
```
public boolean checkInput()
```
  Specified by:
  
  checkInput in interface Algorithm
- process
```
public boolean process()
```
  Specified by:
  
  process in interface Algorithm
- getResult
```
public List<Spot> getResult()
```
  Specified by:
  
  getResult in interface OutputAlgorithm<List<Spot>>
- getErrorMessage
```
public String getErrorMessage()
```
  Specified by:
  
  getErrorMessage in interface Algorithm
- getProcessingTime
```
public long getProcessingTime()
```
  Specified by:
  
  getProcessingTime in interface Benchmark
- setNumThreads
```
public void setNumThreads()
```
  Specified by:
  
  setNumThreads in interface MultiThreaded
- setNumThreads
```
public void setNumThreads(int numThreads)
```
  Specified by:
  
  setNumThreads in interface MultiThreaded
- getNumThreads
```
public int getNumThreads()
```
  Specified by:
  
  getNumThreads in interface MultiThreaded

Class LogDetector<T extends RealType<T> & NativeType<T>>

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

img

radius

threshold

doSubPixelLocalization

doMedianFilter

baseErrorMessage

errorMessage

spots

processingTime

numThreads

interval

calibration

Constructor Detail

LogDetector

Method Detail

checkInput

process

getResult

getErrorMessage

getProcessingTime

setNumThreads

setNumThreads

getNumThreads